Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol SBE4
Gene Symbol Synonym RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa
CGSNL Gene Name STARCH BRANCHING ENZYME 4
Gene Name Synonym Q-enzyme IIb, starch branching enzyme IIb, Starch branching enzyme IIa
Protein Name STARCH BRANCHING ENZYME 4
Allele osbe2a
Chromosome No. 4
Explanation AB023498, E14723. KJ008712. The sugary-h (sug-h) mutant phenotype was controlled by a complementary interaction of two recessive genes, Isoamylase1 (OsISA1) and Starch branching enzyme IIa (OsBEIIa) (Lee et al. 2017). TO:0000975: grain width.
Trait Class Seed - Morphological traits - Grain shape
Seed - Physiological traits - Storage substances
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Os04g33460.1
RAP ID Os04g0409200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Baysal C., He W., Drapal M., Villorbina G., Medina V., Capell T., Khush G.S., Zhu C., Fraser P.D., Christou P.
Proc. Natl. Acad. Sci. U.S.A. 2020  117(42)  26503-26512
Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming.
Chen C., He B., Liu X., Ma X., Liu Y., Yao H.Y., Zhang P., Yin J., Wei X., Koh H.J., Yang C., Xue H.W., Fang Z., Qiao Y.
Plant Biotechnol. J. 2019   
Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP1) regulates starch biosynthesis and seed development via heterotetramer formation in rice (Oryza sativa L.).
Lee Y., Choi M.S., Lee G., Jang S., Yoon M.R., Kim B., Piao R., Woo M.O., Chin J.H., Koh H.J.
Rice (N Y) 2017  10(1)  33
sugary endosperm is Modulated by Starch branching enzyme IIa in Rice (Oryza sativa L.).
Su J., Hu C., Yan X., Jin Y., Chen Z., Guan Q., Wang Y., Zhong D., Jansson C., Wang F., Schnürer A., Sun C.
Nature 2015  523(7562)  602-6
Expression of barley SUSIBA2 transcription factor yields high-starch low-methane rice.
Morita R., Sugino M., Hatanaka T., Misoo S., Fukayama H.
Plant Physiol. 2015  167(4)  1321-31
CO2-Responsive CONSTANS, CONSTANS-Like, and Time of Chlorophyll a/b Binding Protein Expression1 Protein Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.
Sawada T., Nakamura Y., Ohdan T., Saitoh A., Francisco P.B., Suzuki E., Fujita N., Shimonaga T., Fujiwara S., Tsuzuki M., Colleoni C., Ball S.
Arch. Biochem. Biophys. 2014  562  9-21
Diversity of reaction characteristics of glucan branching enzymes and the fine structure of alpha-glucan from various sources.
Lu F.H., Park Y.J.
J. Cereal Sci. 2012  56  706-712
An SNP downstream of the OsBEIIb gene is significantly associated with amylose content and viscosity properties in rice (Oryza sativa L.)
Nakamura Y., Ono M., Utsumi C., Steup M.
Plant Cell Physiol. 2012  53(5)  869-78
Functional Interaction between Plastidial Starch Phosphorylase and Starch Branching Enzymes from Rice during the Synthesis of Branched Maltodextrins.
Yan CJ,Tian ZX,Fang YW,Yang YC,Li J,Zeng SY,Gu SL,Xu CW,Tang SZ,Gu MH
Theor. Appl. Genet. 2011  122(1)  63-76
Genetic analysis of starch paste viscosity parameters in glutinous rice (Oryza sativa L.).
Tian,Z., Qian,Q., Liu,Q., Yan,M., Liu,X., Yan,C., Liu,G., Gao,Z., Tang,S., Zeng,D., Wang,Y., Yu,J., Gu,M. and Li,J.
Proc. Natl. Acad. Sci. U.S.A. 2009  106(51)  21760-5
Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities
Satoh,H., Shibahara,K., Tokunaga,T., Nishi,A., Tasaki,M., Hwang,S.K., Okita,T.W., Kaneko,N., Fujita,N., Yoshida,M., Hosaka,Y., Sato,A., Utsumi,Y., Ohdan,T. and Nakamura,Y.
Plant Cell 2008  20(7)  1833-1849
Mutation of the Plastidial {alpha}-Glucan Phosphorylase Gene in Rice Affects the Synthesis and Structure of Starch in the Endosperm
Yamaguchi, Takeshi
Plant Physiol. 2007  144(1)  258-277
Comprehensive Expression Profiling of Rice Grain Filling-Related Genes under High Temperature Using DNA Microarray.
Mizuno K, Kobayashi E, Tachibana M, Kawasaki T, Fujimura T, Funane K, Kobayashi M, Baba T.
Plant Cell Physiol. 2001  42(4)  349-57
Characterization of an isoform of rice starch branching enzyme, RBE4, in developing seeds.
Nishi A, Nakamura Y, Tanaka N, Satoh H
Plant Physiol. 2001  127(2)  459-72
Biochemical and genetic analysis of the effects of amylose-extender mutation in rice endosperm
Nakamura Y., Umemoto T., Takahata Y., Komae K., Amano E., Satoh H.
Physiol Plant 1996  97(3)  491-498
Changes in structure of starch and enzyme activities affected by sugary mutations in developing rice endosperm. Possible role of starch debranching enzyme (R-enzyme) in amylopectin biosynthesis
Nakamura Y., Takeichi T., Kawaguchi K., Yamanouchi H.
Physiol Plant 1992  84(3)  329-335
Purification of two forms of starch branching enzyme (Q-enzyme) from developing rice endosperm
Nakamura Y, Umemoto T, Takahata Y, Amano E
Gamma Field Symp. 1992  31  25-44
Characteristics and roles of key enzymes associated with starch biosynthesis in rice endosperm
Nakamura,Y. and Yamanouchi,H.
Plant Physiol. 1992  99(3)  1265-1266
Nucleotide sequence of a cDNA encoding starch-branching enzyme, or Q-enzyme I, from rice endosperm
Mizuno,K., Kimura,K., Arai,Y., Kawasaki,T., Shimada,H. and Baba,T.
J. Biochem. 1992  112(5)  643-651
Starch branching enzymes from immature rice seeds.
DB Reference
Gramene ID -
Ontologies
Gene Ontology starch metabolic process( GO:0005982 )
starch biosynthetic process( GO:0019252 )
1,4-alpha-glucan branching enzyme activity( GO:0003844 )
hydrolase activity, hydrolyzing O-glycosyl compounds( GO:0004553 )
polysaccharide metabolic process( GO:0005976 )
amyloplast( GO:0009501 )
amyloplast starch grain( GO:0009568 )
Trait Ontology carbohydrate composition related trait( TO:0000489 )
amylopectin content( TO:0000097 )
sugary endosperm( TO:0000099 )
seed quality( TO:0000162 )
grain thickness( TO:0000399 )
grain length( TO:0000734 )
Plant Ontology leaf( PO:0025034 )
Related Strains
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Phenotype images
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Last updated
Dec 3, 2021

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