Gene - Detail

Detail of Gene

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Basic Information
Gene Symbol Synonym OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2
Chromosome No. 5
Explanation AY373258, AY100471. AY224560.
Trait Class Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK067577
MSU ID LOC_Os05g45720.1
RAP ID Os05g0533600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Jin S.K., Xu L.N., Leng Y.J., Zhang M.Q., Yang Q.Q., Wang S.L., Jia S.W., Song T., Wang R.A., Tao T., Liu Q.Q., Cai X.L., Gao J.P.
Plant Biotechnol. J. 2023   
The OsNAC24-OsNAP protein complex activates OsGBSSI and OsSBEI expression to fine-tune starch biosynthesis in rice endosperm.
Jin S.K., Zhang M.Q., Leng Y.J., Xu L.N., Jia S.W., Wang S.L., Song T., Wang R.A., Yang Q.Q., Tao T., Cai X.L., Gao J.P.
Front Plant Sci 2022  13  905148
<i>OsNAC129</i> Regulates Seed Development and Plant Growth and Participates in the Brassinosteroid Signaling Pathway.
Teng Z., Zheng Q., Liu B., Meng S., Zhang J., Ye N.
Int J Mol Sci 2022  23(14) 
Moderate Soil Drying-Induced Alternative Splicing Provides a Potential Novel Approach for the Regulation of Grain Filling in Rice Inferior Spikelets.
Liu M., Fan F., He S., Guo Y., Chen G., Li N., Li N., Yuan H., Si F., Yang F., Li S.
Rice (N Y) 2022  15(1)  17
Creation of Elite Rice with High-Yield, Superior-Quality and High Resistance to Brown Planthopper Based on Molecular Design.
Zhang H., Jang S.G., Lar S.M., Lee A.R., Cao F.Y., Seo J., Kwon S.W.
Plants (Basel) 2021  10(6) 
Genome-Wide Identification and Genetic Variations of the starch synthase Gene Family in Rice.
Jiang L., Zhong H., Jiang X., Zhang J., Huang R., Liao F., Deng Y., Liu Q., Huang Y., Wang H., Tao Y., Zheng J.
Front Plant Sci 2021  12  814928
Identification and Pleiotropic Effect Analysis of <i>GSE5</i> on Rice Chalkiness and grain shape.
Park J.R., Kim E.G., Jang Y.H., Kim K.M.
BMC Plant Biol. 2021  21(1)  263
Screening and identification of genes affecting grain quality and spikelet fertility during high-temperature treatment in grain filling stage of rice.
Baysal C., He W., Drapal M., Villorbina G., Medina V., Capell T., Khush G.S., Zhu C., Fraser P.D., Christou P.
Proc. Natl. Acad. Sci. U.S.A. 2020  117(42)  26503-26512
Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming.
Chen C., He B., Liu X., Ma X., Liu Y., Yao H.Y., Zhang P., Yin J., Wei X., Koh H.J., Yang C., Xue H.W., Fang Z., Qiao Y.
Plant Biotechnol. J. 2019   
Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP1) regulates starch biosynthesis and seed development via heterotetramer formation in rice (Oryza sativa L.).
Long W., Wang Y., Zhu S., Jing W., Wang Y., Ren Y., Tian Y., Liu S., Liu X., Chen L., Wang D., Zhong M., Zhang Y., Hu T., Zhu J., Hao Y., Zhu X., Zhang W., Wang C., Zhang W., Wan J.
Plant Physiol. 2018  177(2)  698-712
FLOURY shrunken endosperm1 Connects Phospholipid Metabolism and Amyloplast Development in Rice.
Yun M.S. , Umemoto T. , Kawagoe Y.
Plant Cell Physiol. 2011  52(6)  1068-82
Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis.
Yan CJ,Tian ZX,Fang YW,Yang YC,Li J,Zeng SY,Gu SL,Xu CW,Tang SZ,Gu MH
Theor. Appl. Genet. 2011  122(1)  63-76
Genetic analysis of starch paste viscosity parameters in glutinous rice (Oryza sativa L.).
Tian,Z., Qian,Q., Liu,Q., Yan,M., Liu,X., Yan,C., Liu,G., Gao,Z., Tang,S., Zeng,D., Wang,Y., Yu,J., Gu,M. and Li,J.
Proc. Natl. Acad. Sci. U.S.A. 2009  106(51)  21760-5
Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities
Ryoo N, Yu C, Park CS, Baik MY, Park IM, Cho MH, Bhoo SH, An G, Hahn TR, Jeon JS.
Plant Cell Rep. 2007  26(7)  1083-95
Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.).
Dian,W., Jiang,H. and Wu,P.
J. Exp. Bot. 2005  56(412)  623-632
Evolution and expression analysis of starch synthase III and IV in rice.
Hirose T, Terao T.
Planta. 2004  220(1)  9-16
A comprehensive expression analysis of the starch synthase gene family in rice (Oryza sativa L.).
Cooper,B., Hutchison,D., Park,S., Guimil,S., Luginbuhl,P., Ellero,C., Goff,S.A. and Glazebrook,J.
Plant Mol. Biol. 2003  53(3)  273-279
Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle.
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DB Reference
Gramene ID -
Gene Ontology response to desiccation( GO:0009269 )
endosperm development( GO:0009960 )
amyloplast( GO:0009501 )
starch biosynthetic process( GO:0019252 )
chloroplast( GO:0009507 )
glycogen biosynthetic process( GO:0005978 )
starch synthase activity( GO:0009011 )
Trait Ontology drought related trait( TO:0000394 )
Plant Ontology endosperm( PO:0009089 )
endosperm development stage( PO:0007633 )
leaf( PO:0025034 )
Related Strains
Phenotype images
Last updated
Dec 27, 2023