Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol SSIVA
Gene Symbol Synonym OsSSIVa, SSIV-1, OsSSIV-1
CGSNL Gene Name SOLUBLE STARCH SYNTHASE IVA
Gene Name Synonym SOLUBLE STARCH SYNTHASE IV-1
Protein Name SOLUBLE STARCH SYNTHASE IVA
Allele
Chromosome No. 1
Explanation AY373257. AY100470.
Trait Class Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK100976
MSU ID LOC_Os01g52250.1
LOC_Os01g52250.2
LOC_Os01g52250.3
LOC_Os01g52250.4
LOC_Os01g52250.5
LOC_Os01g52250.6
RAP ID Os01g0720600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Teng Z., Zheng Q., Liu B., Meng S., Zhang J., Ye N.
Int J Mol Sci 2022  23(14) 
Moderate Soil Drying-Induced Alternative Splicing Provides a Potential Novel Approach for the Regulation of Grain Filling in Rice Inferior Spikelets.
Liu X., Luo J., Li T., Yang H., Wang P., Su L., Zheng Y., Bao C., Zhou C.
Rice (N Y) 2021  14(1)  25
SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other Histone Modifications.
Park J.R., Kim E.G., Jang Y.H., Kim K.M.
BMC Plant Biol. 2021  21(1)  263
Screening and identification of genes affecting grain quality and spikelet fertility during high-temperature treatment in grain filling stage of rice.
Zhang H., Jang S.G., Lar S.M., Lee A.R., Cao F.Y., Seo J., Kwon S.W.
Plants (Basel) 2021  10(6) 
Genome-Wide Identification and Genetic Variations of the starch synthase Gene Family in Rice.
Baysal C., He W., Drapal M., Villorbina G., Medina V., Capell T., Khush G.S., Zhu C., Fraser P.D., Christou P.
Proc. Natl. Acad. Sci. U.S.A. 2020  117(42)  26503-26512
Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming.
Yuenyong W., Chinpongpanich A., Comai L., Chadchawan S., Buaboocha T.
BMC Plant Biol. 2018  18(1)  335
Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.
Wambugu P., Ndjiondjop M.N., Furtado A., Henry R.
Plant Biotechnol. J. 2017   
Sequencing of bulks of segregants allows dissection of genetic control of amylose content in rice.
Jiang S., Sun S., Bai L., Ding G., Wang T., Xia T., Jiang H., Zhang X., Zhang F.
PLoS ONE 2017  12(7)  e0181037
Resequencing and variation identification of whole genome of the japonica rice variety "Longdao24" with high yield.
Yan CJ,Tian ZX,Fang YW,Yang YC,Li J,Zeng SY,Gu SL,Xu CW,Tang SZ,Gu MH
Theor. Appl. Genet. 2011  122(1)  63-76
Genetic analysis of starch paste viscosity parameters in glutinous rice (Oryza sativa L.).
Tian,Z., Qian,Q., Liu,Q., Yan,M., Liu,X., Yan,C., Liu,G., Gao,Z., Tang,S., Zeng,D., Wang,Y., Yu,J., Gu,M. and Li,J.
Proc. Natl. Acad. Sci. U.S.A. 2009  106(51)  21760-5
Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities
Ryoo N, Yu C, Park CS, Baik MY, Park IM, Cho MH, Bhoo SH, An G, Hahn TR, Jeon JS.
Plant Cell Rep. 2007  26(7)  1083-95
Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.).
Dian,W., Jiang,H. and Wu,P.
J. Exp. Bot. 2005  56(412)  623-632
Evolution and expression analysis of starch synthase III and IV in rice.
Hirose T, Terao T.
Planta. 2004  220(1)  9-16
A comprehensive expression analysis of the starch synthase gene family in rice (Oryza sativa L.).
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to desiccation( GO:0009269 )
inflorescence development( GO:0010229 )
starch biosynthetic process( GO:0019252 )
starch synthase activity( GO:0009011 )
amyloplast( GO:0009501 )
chloroplast( GO:0009507 )
glucan biosynthetic process( GO:0009250 )
response to salt stress( GO:0009651 )
Trait Ontology salt tolerance( TO:0006001 )
inflorescence development trait( TO:0000621 )
drought related trait( TO:0000394 )
Plant Ontology inflorescence development stage( PO:0001083 )
plant ovary( PO:0009072 )
plant embryo( PO:0009009 )
endosperm( PO:0009089 )
leaf( PO:0025034 )
Related Strains
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Phenotype images
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Last updated
Dec 5, 2022

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