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Basic Information
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CGSNL Gene Symbol
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SSIIIB
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Gene Symbol Synonym
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OsSSIIIb. SSIII-1, SSIIIa
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CGSNL Gene Name
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SOLUBLE STARCH SYNTHASE IIIB
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Gene Name Synonym
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Protein Name
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SOLUBLE STARCH SYNTHASE IIIB
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Allele
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b10, ssIIIb, ssIIIbCR-1, ssIIIbCR-2
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Chromosome No.
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4
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Explanation
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AF432915. an RS (resistant starch) locus. SSIIIa in Park et al. 2021. GO:2001070:starch binding. TO:0001069: cooking quality trait.
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Trait Class
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Biochemical character
Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Character as QTL - Yield and productivity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK122098
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MSU ID
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LOC_Os04g53310.1
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RAP ID
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Os04g0624600
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Wang A., Jing Y., Cheng Q., Zhou H., Wang L., Gong W., Kou L., Liu G., Meng X., Chen M., Ma H., Shu X., Yu H., Wu D., Li J.
Proc. Natl. Acad. Sci. U.S.A. 2023 120(19) e2220622120
Loss of function of <i>SSIIIa</i> and <i>SSIIIb</i> coordinately confers high RS content in cooked rice.
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Zheng Y., Thi K.M., Lin L., Xie X., Khine E.E., Nyein E.E., Lin M.H.W., New W.W., Aye S.S., Wu W.
Front Plant Sci 2023 14 1250854
Genome-wide association study of cooking-caused grain expansion in rice (<i>Oryza sativa</i> L.).
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Liu M., Fan F., He S., Guo Y., Chen G., Li N., Li N., Yuan H., Si F., Yang F., Li S.
Rice (N Y) 2022 15(1) 17
Creation of Elite Rice with High-Yield, Superior-Quality and High Resistance to Brown Planthopper Based on Molecular Design.
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Liu C., Ma T., Yuan D., Zhou Y., Long Y., Li Z., Dong Z., Duan M., Yu D., Jing Y., Bai X., Wang Y., Hou Q., Liu S., Zhang J.S., Chen S.Y., Li D., Liu X., Li Z., Wang W., Li J., Wei X., Ma B., Wan X.
Plant Biotechnol. J. 2022 20(8) 1470-1486
The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.
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Zhang H., Jang S.G., Lar S.M., Lee A.R., Cao F.Y., Seo J., Kwon S.W.
Plants (Basel) 2021 10(6)
Genome-Wide Identification and Genetic Variations of the starch synthase Gene Family in Rice.
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Park J.R., Kim E.G., Jang Y.H., Kim K.M.
BMC Plant Biol. 2021 21(1) 263
Screening and identification of genes affecting grain quality and spikelet fertility during high-temperature treatment in grain filling stage of rice.
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Baysal C., He W., Drapal M., Villorbina G., Medina V., Capell T., Khush G.S., Zhu C., Fraser P.D., Christou P.
Proc. Natl. Acad. Sci. U.S.A. 2020 117(42) 26503-26512
Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming.
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Xiong Y., Ren Y., Li W., Wu F., Yang W., Huang X., Yao J.
J. Exp. Bot. 2019 70(15) 3765-3780
NF-YC12 is a key multi-functional regulator of accumulation of seed storage substances in rice.
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Jiang S., Sun S., Bai L., Ding G., Wang T., Xia T., Jiang H., Zhang X., Zhang F.
PLoS ONE 2017 12(7) e0181037
Resequencing and variation identification of whole genome of the japonica rice variety "Longdao24" with high yield.
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Yan CJ,Tian ZX,Fang YW,Yang YC,Li J,Zeng SY,Gu SL,Xu CW,Tang SZ,Gu MH
Theor. Appl. Genet. 2011 122(1) 63-76
Genetic analysis of starch paste viscosity parameters in glutinous rice (Oryza sativa L.).
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Tian,Z., Qian,Q., Liu,Q., Yan,M., Liu,X., Yan,C., Liu,G., Gao,Z., Tang,S., Zeng,D., Wang,Y., Yu,J., Gu,M. and Li,J.
Proc. Natl. Acad. Sci. U.S.A. 2009 106(51) 21760-5
Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities
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Fujita N,Yoshida M,Kondo T,Saito K,Utsumi Y,Tokunaga T,Nishi A,Satoh H,Park JH,Jane JL,Miyao A,Hirochika H,Nakamura Y
Plant Physiol. 2007 144 2009-23
Characterization of SSIIIa-deficient mutants of rice: the function of SSIIIa and pleiotropic effects by SSIIIa deficiency in the rice endosperm.
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Ryoo N, Yu C, Park CS, Baik MY, Park IM, Cho MH, Bhoo SH, An G, Hahn TR, Jeon JS.
Plant Cell Rep. 2007 26(7) 1083-95
Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.).
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Fujita N, Yoshida M, Asakura N, Ohdan T, Miyao A, Hirochika H, Nakamura Y.
Plant Physiol. 2006 140(3) 1070-84
Function and characterization of starch synthase I using mutants in rice.
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Dian,W., Jiang,H. and Wu,P.
J. Exp. Bot. 2005 56(412) 623-632
Evolution and expression analysis of starch synthase III and IV in rice.
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Hirose T, Terao T.
Planta. 2004 220(1) 9-16
A comprehensive expression analysis of the starch synthase gene family in rice (Oryza sativa L.).
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DB Reference
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Gramene ID
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GR:0061114
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Ontologies
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Gene Ontology
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starch biosynthetic process( GO:0019252 )
starch synthase activity( GO:0009011 )
amyloplast( GO:0009501 )
chloroplast( GO:0009507 )
inflorescence development( GO:0010229 )
response to heat( GO:0009408 )
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Trait Ontology
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inflorescence development trait( TO:0000621 )
heat tolerance( TO:0000259 )
starch content( TO:0000696 )
amylose content( TO:0000196 )
fat and essential oil content( TO:0000604 )
1000-seed weight( TO:0000382 )
grain yield( TO:0000396 )
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Plant Ontology
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inflorescence development stage( PO:0001083 )
plant embryo( PO:0009009 )
plant ovary( PO:0009072 )
endosperm( PO:0009089 )
leaf( PO:0025034 )
seed( PO:0009010 )
inflorescence( PO:0009049 )
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Related Strains
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Phenotype images
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Last updated
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Feb 19, 2025
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Update info.