Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SSIIC
Gene Symbol Synonym OsSSIIc, SSII-1, SSII1
CGSNL Gene Name SOLUBLE STARCH SYNTHASE IIC
Gene Name Synonym "Soluble starch synthase 2-1, chloroplastic/amyloplastic", Soluble starch synthase II-1
Protein Name SOLUBLE STARCH SYNTHASE IIC
Allele
Chromosome No. 10
Explanation EC=2.4.1.21 Q7XE48. AF383878. GU727155-GU727212 (wild rice species). FJ811330-FJ811370 (Oryza glaberrima, Oryza barthii, Oryza nivara). DQ901744-DQ901773 (wild rice species). EF069782-EF069842 (O. sativa and wild rice species).
Trait Class Seed - Physiological traits - Storage substances
Expression
Sequence/Locus
cDNA Accession No. AF383878
MSU ID LOC_Os10g30156.1
RAP ID Os10g0437600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Zhou H., Meng F., Jiang W., Lu X., Zhang R., Huang A., Wu K., Deng P., Wang Y., Zhao H., Du Y., Huo J., Du X., Feng N., Zheng D.
Front Plant Sci 2024  15  1416936
Potassium indole-3-butyric acid affects rice's adaptability to salt stress by regulating carbon metabolism, transcription factor genes expression, and biosynthesis of secondary metabolites.
Liu X., Luo J., Li T., Yang H., Wang P., Su L., Zheng Y., Bao C., Zhou C.
Rice (N Y) 2021  14(1)  25
SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other Histone Modifications.
Zhang H., Jang S.G., Lar S.M., Lee A.R., Cao F.Y., Seo J., Kwon S.W.
Plants (Basel) 2021  10(6) 
Genome-Wide Identification and Genetic Variations of the starch synthase Gene Family in Rice.
Baysal C., He W., Drapal M., Villorbina G., Medina V., Capell T., Khush G.S., Zhu C., Fraser P.D., Christou P.
Proc. Natl. Acad. Sci. U.S.A. 2020  117(42)  26503-26512
Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming.
Zhao Y.F., Peng T., Sun H.Z., Teotia S., Wen H.L., Du Y.X., Zhang J., Li J.Z., Tang G.L., Xue H.W., Zhao Q.Z.
Plant Biotechnol. J. 2019  17(4)  712-723
miR1432-OsACOT (Acyl-CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice.
Jiang S., Sun S., Bai L., Ding G., Wang T., Xia T., Jiang H., Zhang X., Zhang F.
PLoS ONE 2017  12(7)  e0181037
Resequencing and variation identification of whole genome of the japonica rice variety "Longdao24" with high yield.
Li,Z.M., Zheng,X.M. and Ge,S.
Theor. Appl. Genet. 2011  123(1)  21-31
Genetic diversity and domestication history of African rice (Oryza glaberrima) as inferred from multiple gene sequences
Yan CJ,Tian ZX,Fang YW,Yang YC,Li J,Zeng SY,Gu SL,Xu CW,Tang SZ,Gu MH
Theor. Appl. Genet. 2011  122(1)  63-76
Genetic analysis of starch paste viscosity parameters in glutinous rice (Oryza sativa L.).
Zheng,X.M. and Ge,S.
Mol. Ecol. 2010  19(12)  2439-2454
Ecological divergence in the presence of gene flow in two closely related Oryza species (Oryza rufipogon and O. nivara)
Tian,Z., Qian,Q., Liu,Q., Yan,M., Liu,X., Yan,C., Liu,G., Gao,Z., Tang,S., Zeng,D., Wang,Y., Yu,J., Gu,M. and Li,J.
Proc. Natl. Acad. Sci. U.S.A. 2009  106(51)  21760-5
Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities
Ryoo N, Yu C, Park CS, Baik MY, Park IM, Cho MH, Bhoo SH, An G, Hahn TR, Jeon JS.
Plant Cell Rep. 2007  26(7)  1083-95
Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.).
Zhu,Q., Zheng,X., Luo,J., Gaut,B.S. and Ge,S.
Mol. Biol. Evol. 2007  24(3)  875-888
Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice
Zhang,L.B. and Ge,S.
Mol. Biol. Evol. 2007  24(3)  769-783
Multilocus analysis of nucleotide variation and speciation in Oryza officinalis and its close relatives
Hirose T, Terao T.
Planta. 2004  220(1)  9-16
A comprehensive expression analysis of the starch synthase gene family in rice (Oryza sativa L.).
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to auxin stimulus( GO:0009733 )
response to indolebutyric acid stimulus( GO:0080026 )
starch biosynthetic process( GO:0019252 )
starch synthase activity( GO:0009011 )
chloroplast( GO:0009507 )
amyloplast( GO:0009501 )
Trait Ontology auxin sensitivity( TO:0000163 )
Plant Ontology endosperm( PO:0009089 )
leaf( PO:0025034 )
Related Strains
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Phenotype images
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Last updated
Dec 11, 2024

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