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Basic Information
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CGSNL Gene Symbol
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AMY3C
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Gene Symbol Synonym
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Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C, OsAmy3B
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CGSNL Gene Name
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ALPHA-AMYLASE 3C
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Gene Name Synonym
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Alpha-amylase3C, Alpha-amylase isozyme 3C precursor, Alpha-amylase isozyme 3C, Amylase-7, Alpha-amylase-3A
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Protein Name
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ALPHA-AMYLASE 3C
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Allele
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Chromosome No.
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9
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Explanation
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EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. P27939. X56338. OsAmy3B in Suriyasak et al. 2020.
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Trait Class
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Biochemical character
Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK101358
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MSU ID
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LOC_Os09g28420.1
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RAP ID
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Os09g0457800
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Liu K., Li D., Li J., Chen S., Zhu D., Guo M., Yang J., Liang X., Wang J., Wang H., Chen C., Guo T., Liu Y.
Rice (N Y) 2025 18(1) 51
GWAS Combined with Meta-Analysis Identifies OsDREB6 as a Regulator of Coleoptile Elongation Under Anaerobic Conditions in Rice.
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Kim N., Jan R., Asif S., Asaf S., Kim H.Y., Kim K.M.
Int J Mol Sci 2025 27(1)
Hormonal Interplay of GAs and Abscisic Acid in Rice Germination and Growth Under Low-Temperature Stress.
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He Y., Zhu M., Li Z., Jiang S., He Z., Xu S., Chen X., Hu Z., Zhang Z.
Int J Mol Sci 2021 22(12)
<i>IPA1</i> Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and <i>WRKY</i> Pathways.
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Suriyasak C., Oyama Y., Ishida T., Mashiguchi K., Yamaguchi S., Hamaoka N., Iwaya-Inoue M., Ishibashi Y.
Sci Rep 2020 10(1) 17378
Mechanism of delayed seed germination caused by high temperature during grain filling in rice (Oryza sativa L.).
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Kitajima A, Asatsuma S, Okada H, Hamada Y, Kaneko K, Nanjo Y, Kawagoe Y, Toyooka K, Matsuoka K, Takeuchi M, Nakano A, Mitsui T.
Plant Cell 2009 21(9) 2844-58.
The rice alpha-amylase glycoprotein is targeted from the Golgi apparatus through the secretory pathway to the plastids.
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Nanjo Y, Asatsuma S, Itoh K, Hori H, Mitsui T.
Biosci. Biotechnol. Biochem. 2004 68(1) 112-8.
Proteomic identification of alpha-amylase isoforms encoded by RAmy3B/3C from germinating rice seeds.
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Hwang YS, Thomas BR, Rodriguez RL.
Plant Mol. Biol. 1999 40(6) 911-920
Differential expression of rice alpha-amylase genes during seedling development under anoxia.
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Sheu JJ, Yu TS, Tong WF, Yu SM.
J. Biol. Chem. 1996 271(43) 26998-7004
Carbohydrate starvation stimulates differential expression of rice alpha-amylase genes that is modulated through complicated transcriptional and posttranscriptional processes.
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Parco, A., G. Magpantay, G. Second, R. Rodriguez and N. Huang
RGN 1994 11 137-140.
Restriction fragment length polymorphism and linkage analysis of rice alpha-amylase gene family.
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Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994 138 1251-1274.
Saturated molecular map of the rice genome based on an interspecific backcross population.
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Yu,S.M., Tzou,W.S., Lo,W.S., Kuo,Y.H., Lee,H.T. and Wu,R.
Gene 1992 122(2) 247-253
Regulation of alpha-amylase-encoding gene expression in germinating seeds and cultured cells of rice
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Ranjhan, S., J.C. Litts, M.R. Foolad and R.L. Rodriguez
Theor. Appl. Genet. 1991 82 481-488.
Chromosomal localization and genomic organization of alpha-amylase genes in rice (Oryza sativa L.).
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Sutliff,T.D., Huang,N., Litts,J.C. and Rodriguez,R.L.
Plant Mol. Biol. 1991 16(4) 579-591
Characterization of an alpha-amylase multigene cluster in rice.
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Rodriguez, R.L., N. Huang, T. Sutliff, S. Ranjhan, E. Karrer and J. Litts
Rice Genetics. II. IRRI, Manila, Philippines. 1991 417-429.
Organization, structure and expression of the alpha-amylase multigene family.
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Huang,N., Sutliff,T.D., Litts,J.C. and Rodriguez,R.L.
Plant Mol. Biol. 1990 14(5) 655-668
Classification and characterization of the rice alpha-amylase multigene family.
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DB Reference
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Gramene ID
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GR:0061335
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Ontologies
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Gene Ontology
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response to abscisic acid stimulus( GO:0009737 )
response to gibberellin stimulus( GO:0009739 )
calcium ion binding( GO:0005509 )
alpha-amylase activity( GO:0004556 )
cytoplasmic membrane-bounded vesicle( GO:0016023 )
sucrose catabolic process( GO:0005987 )
starch catabolic process( GO:0005983 )
carbohydrate metabolic process( GO:0005975 )
seed germination( GO:0009845 )
response to heat( GO:0009408 )
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Trait Ontology
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gibberellic acid sensitivity( TO:0000166 )
heat tolerance( TO:0000259 )
abscisic acid sensitivity( TO:0000615 )
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Plant Ontology
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0 seed germination stage( PO:0007057 )
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Related Strains
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Phenotype images
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Last updated
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Aug 10, 2026
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Update info.