Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol PGI2
Gene Symbol Synonym Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2
Gene Name Synonym Phosphoglucoisomerase2, Phosphoglucoisomerase 2, Phosphoglucoisomerase-2, Glucose-6-phosphate isomerase, cytosolic B, Phosphoglucose isomerase B, Phosphohexose isomerase B, "glucose-6-phosphate isomerase, cytosolic B", sugar isomerase
Allele Pgi2-1, Pgi2-2, Pgi2-3, Pgi2-4
Chromosome No. 6
Explanation Dimer. P(ST-H,PAGE-TC),L&C(ST-H). Interlocus hybrid bands occur. Differential allele frequencies between Indica and Japonica types. Thermomorphs are known. EC= P42863. D45218.
Trait Class Biochemical character
Coloration - Anthocyanin
cDNA Accession No. AK068236
MSU ID LOC_Os06g14510.1
RAP ID Os06g0256500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Locate(cM) 67.0
Link map Classical linkage map
He Z., Zou T., Xiao Q., Yuan G., Liu M., Tao Y., Zhou D., Zhang X., Deng Q., Wang S., Zheng A., Zhu J., Liang Y., Yu X., Wang A., Liu H., Wang L., Li P., Li S.
Development 2021  148(6) 
An L-type lectin receptor-like kinase promotes starch accumulation during rice pollen maturation.
Chen X., Tao Y., Ali A., Zhuang Z., Guo D., Guo Q., Riaz A., Zhang H., Xu P., Liao Y., Wang J., Sun C., Xiang Q., Wu X.
Int J Mol Sci 2019  20(10) 
Transcriptome and Proteome Profiling of Different Colored Rice Reveals Physiological Dynamics Involved in the Flavonoid Pathway.
Nozue,F., Umeda,M., Nagamura,Y., Minobe,Y. and Uchimiya,H.
DNA Seq. 1996  6(3)  127-135
Characterization of cDNA encoding for phosphoglucose isomerase of rice (Oryza sativa L.).
Yanagihara, S., S.R. McCouch, K. Ishikawa, Y. Ogi, K. Maruyama and H. Ikehashi
Theor. Appl. Genet. 1995  90  182-188.
Molecular analysis of the inheritance of the S-5 locus, conferring wide compatibility in Indica/Japonica hybrids of rice (O.sativa L.).
Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994  138  1251-1274.
Saturated molecular map of the rice genome based on an interspecific backcross population.
Nozue, F., M. Umeda, Y. Nagamura, Y. Minobe and H. Uchimiya
Breeding Science 1994  44(Suppl. 1)  29
Molecular cloning and expression analysis of rice phosphoglucose (PGI) genes.
Mackill, D.J., M.A. Salam, Z.Y. Wang and S.D. Tanksley
Theor. Appl. Genet. 1993  85  536-540.
A major photoperiod-sensitivity gene tagged with RFLP and isozyme markers in rice.
Brar, D.S., B.G. de los Reyes, O. Panaud, A. Sanchez and G.S. Khush
Rice Genetics. II. IRRI, Manila, Philippines. 1991    137-145.
Genetic mapping in rice using isozyme and RFLP markers.
Ishikawa, R., H. Morishima, T. Kinoshita, T. Harada, M. Niizeki and K. Saito
Japan. J. Breed. 1991  41(2)  265-272.
Linkage analysis of nine isozyme genes on the conventional linkage map in rice.
Ishikawa, R., H. Morishima and T. Kinoshita
Rice Genetics. II. IRRI, Manila, Philippines. 1991    127-136.
Linkage analysis and application of isozyme genes in rice.
Salam, M.A., D.J. Mackill and J.C. Glaszmann
RGN 1990  7  130-132.
Linkage between Pgi-2 and photoperiod sensitivity.
Pham, J.L., J.C. Glaszmann, R. Sano, P. Barbier, A. Ghesquiere and G. Second
Genome 1990  33(3)  348-359.
Isozyme markers in rice genetic analysis and linkage relationships.
Oosumi, T., A. Miyazaki, H. Uchimiya, F. Kikuchi and M. Yokoo
Bot. Mag. Tokyo. 1989  102  283-289.
Analysis of glucose phosphate isomerase in near-isogenic lines and cultivars of rice (Oryza sativa L.).
Sano, R. and P. Barbier
RGN 1985  2  60-62.
Analysis of five isoenzyme genes and chromosomal location of Amp-1.
TextPresso Search Search textpresso for PGI2 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060603
Gene Ontology glycolysis( GO:0006096 )
glucose-6-phosphate isomerase activity( GO:0004347 )
cytosol( GO:0005829 )
gluconeogenesis( GO:0006094 )
flavonoid biosynthetic process( GO:0009813 )
Trait Ontology -
Plant Ontology -
Related Strains
Phenotype images
Last updated
Oct 20, 2021