Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol YGL1
Gene Symbol Synonym OsYGL1, CHLG, Ygl1, CS, OsCHLG
Gene Name Synonym chlorina, Chl synthetase, Chlorophyll synthase, yellow green leaf 1
Allele ygl1
Chromosome No. 5
Explanation EF432576. Q5W6H5.
Trait Class Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
Coloration - Chlorophyll
Tolerance and resistance - Disease resistance
cDNA Accession No. AK099004
MSU ID LOC_Os05g28200.1
RAP ID Os05g0349700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Cheng R., Gong L., Li Z., Liang Y.K.
J. Plant Physiol. 2019  232  39-50
Rice BIG gene is required for seedling viability.
Lin D., Zheng K., Liu Z., Li Z., Teng S., Xu J., Dong Y.
Plant Genome 2018  11(1) 
Rice <i>TCM1</i> Encoding a Component of the TAC Complex is Required for Chloroplast Development under Cold Stress.
Huang R., Wang Y., Wang P., Li C., Xiao F., Chen N., Li N., Li C., Sun C., Li L., Chen R., Xu Z., Zhu J., Deng X.
Plant Mol. Biol. 2018  96(1-2)  5-16
A single nucleotide mutation of IspF gene involved in the MEP pathway for isoprenoid biosynthesis causes yellow-green leaf phenotype in rice.
Liu Z., Wang Z., Gu H., You J., Hu M., Zhang Y., Zhu Z., Wang Y., Liu S., Chen L., Liu X., Tian Y., Zhou S., Jiang L., Liu L., Wan J.
Front Plant Sci 2018  9  782
Identification and Phenotypic Characterization of <i>ZEBRA LEAF16</i> Encoding a beta-hydroxyacyl-ACP dehydratase in Rice.
Xiao H., Xu Y., Ni C., Zhang Q., Zhong F., Huang J., Liu W., Peng L., Zhu Y., Hu J.
J. Exp. Bot. 2018  69(12)  2923-2936
A rice dual-localized pentatricopeptide repeat protein is involved in organellar RNA editing together with OsMORFs.
Lin D., Jiang Q., Ma X., Zheng K., Gong X., Teng S., Xu J., Dong Y.
G3 (Bethesda) 2018  8(1)  253-263
Rice <i>TSV3</i> Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.
Sheng Z., Lv Y., Li W., Luo R., Wei X., Xie L., Jiao G., Shao G., Wang J., Tang S., Hu P.
PLoS ONE 2017  12(5)  e0177989
Yellow-Leaf 1 encodes a magnesium-protoporphyrin IX monomethyl ester cyclase, involved in chlorophyll biosynthesis in rice (Oryza sativa L.).
Zhou F., Wang C.Y., Gutensohn M., Jiang L., Zhang P., Zhang D., Dudareva N., Lu S.
Proc. Natl. Acad. Sci. U.S.A. 2017  114(26)  6866-6871
A recruiting protein of geranylgeranyl diphosphate synthase controls metabolic flux toward chlorophyll biosynthesis in rice.
Ahmed M.M.S., Ji W., Wang M., Bian S., Xu M., Wang W., Zhang J., Xu Z., Yu M., Liu Q., Zhang C., Zhang H., Tang S., Gu M., Yu H.
Gene 2017   
Transcriptional changes of rice in response to rice black-streaked dwarf virus.
Inagaki N., Kinoshita K., Kagawa T., Tanaka A., Ueno O., Shimada H., Takano M.
PLoS ONE 2015  10(8)  e0135408
Phytochrome B Mediates the Regulation of Chlorophyll Biosynthesis through Transcriptional Regulation of ChlH and GUN4 in Rice Seedlings.
Yang Y., Xu J., Huang L., Leng Y., Dai L., Rao Y., Chen L., Wang Y., Tu Z., Hu J., Ren D., Zhang G., Zhu L., Guo L., Qian Q., Zeng D.
J. Exp. Bot. 2015   
PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.
WANG Zhong-wei, ZHANG Tian-quan, XING Ya-di ZENG Xiao-qin, WANG Ling, LIU Zhong-xian, SHI Jun-qiong, ZHU Xiao-yan, MA Ling, LI Yun-Feng, LING Ying-Hua, SANG Xian-chun, HE Guang-Hua
Journal of Integrative Agriculture 2015  15(5)  944-953
YGL9, encoding the putative chloroplast signal recognition particle 43 kDa protein in rice, is involved in chloroplast development
Wang Y.a, Jiang X.a, Li K.a, Wu M.a b, Zhang R.a, Zhang L.a, Chen G.a
Biometals 2014  27  389-401
Photosynthetic responses of Oryza sativa L. seedlings to cadmium stress: Physiological, biochemical and ultrastructural analyses
Deng X.J., Zhang H.Q., Wang Y., He F., Liu J.L., Xiao X., Shu Z.F., Li W., Wang G.H., Wang G.L.
PLoS ONE 2014  9(6)  e99564
Mapped clone and functional analysis of leaf-color gene ygl7 in a rice hybrid (Oryza sativa L. ssp. indica).
Chen H., Cheng Z., Ma X., Wu H., Liu Y., Zhou K., Chen Y., Ma W., Bi J., Zhang X., Guo X., Wang J., Lei C., Wu F., Lin Q., Liu Y., Liu L., Jiang L.
Plant Cell Rep. 2013  32(12)  1855-67
A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice.
Wu,Z., Zhang,X., He,B., Diao,L., Sheng,S., Wang,J., Guo,X., Su,N., Wang,L., Jiang,L., Wang,C., Zhai,H. and Wan,J.
Plant Physiol. 2007  145(1)  29-40
A chlorophyll-deficient rice mutant with impaired chlorophyllide esterification in chlorophyll biosynthesis
TextPresso Search Search textpresso for YGL1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology chlorophyll metabolic process( GO:0015994 )
pentose-phosphate shunt( GO:0006098 )
rRNA processing( GO:0006364 )
aromatic amino acid family biosynthetic process( GO:0009073 )
leaf morphogenesis( GO:0009965 )
thylakoid membrane organization( GO:0010027 )
chlorophyll biosynthetic process( GO:0015995 )
chloroplast thylakoid( GO:0009534 )
chloroplast relocation( GO:0009902 )
chlorophyll synthetase activity( GO:0046408 )
response to cadmium ion( GO:0046686 )
defense response to virus( GO:0051607 )
transcription from plastid promoter( GO:0042793 )
positive regulation of transcription, DNA-dependent( GO:0045893 )
integral to membrane( GO:0016021 )
carotenoid biosynthetic process( GO:0016117 )
isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway( GO:0019288 )
cysteine biosynthetic process( GO:0019344 )
cell differentiation( GO:0030154 )
chloroplast membrane( GO:0031969 )
Trait Ontology viral disease resistance( TO:0000148 )
black streak dwarf virus resistance( TO:0000020 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Aug 19, 2019

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