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Basic Information
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CGSNL Gene Symbol
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YAB5
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Gene Symbol Synonym
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OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1, OsTOB1
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CGSNL Gene Name
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YABBY 5
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Gene Name Synonym
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Protein YABBY 5, TONGARI-BOUSHI1, TONGARI-BOUSHI 1
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Protein Name
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PROTEIN YABBY 5
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Allele
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tob1, osyab5, yab5-ko
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Chromosome No.
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4
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Explanation
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BAF15337. Q0JBF0. OsYAB3 in Dai et al. 2007. TO:0000862: floral organ morphology trait. TO:0000978: glume shape.
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Trait Class
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Vegetative organ - Leaf
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK070205
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MSU ID
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LOC_Os04g45330.1
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RAP ID
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Os04g0536300
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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He Q., Wu H., Zeng L., Yin C., Wang L., Tan Y., Lv W., Liao Z., Zheng X., Zhang S., Han Q., Wang D., Zhang Y., Xiong G., Wang Q.
Plant Cell 2024
OsKANADI1 and OsYABBY5 regulate rice plant height by targeting GIBERELLIN 2-OXIDASE6.
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Lorenzo C.D.
Plant Cell 2024
Small but mighty: OsKANADI1 and OsYABBY5 regulate plant stature by tuning GA metabolism in rice.
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Cai Z., Wang G., Li J., Kong L., Tang W., Chen X., Qu X., Lin C., Peng Y., Liu Y., Deng Z., Ye Y., Wu W., Duan Y.
Plant Physiol. 2023 191(3) 1684-1701
Thermo-Sensitive Spikelet Defects 1 acclimatizes rice spikelet initiation and development to high temperature.
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Zhang T., Wu A., Hu X., Deng Q., Ma Z., Su L.
PeerJ 2023 11 e14783
Comprehensive study of rice YABBY gene family: evolution, expression and interacting proteins analysis.
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Zhang P., Zhu W., He Y., Fan J., Shi J., Fu R., Hu J., Li L., Zhang D., Liang W.
New Phytol. 2022
THERMO-SENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.
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Malik N., Ranjan R., Parida S.K., Agarwal P., Tyagi A.K.
Plant J. 2020 101(6) 1411-1429
Mediator subunit OsMED14_1 plays an important role in rice development.
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Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
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Tanaka W., Toriba T., Hirano H.Y.
New Phytol. 2017 215(2) 825-839
Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.
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Liu X., Li M., Liu K., Tang D., Sun M., Li Y., Shen Y., Du G., Cheng Z.
J. Exp. Bot. 2016 67(8) 2139-50
Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.
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Li Y.Y., Shen A., Xiong W., Sun Q.L., Luo Q., Song T., Li Z.L., Luan W.J.
Rice (N Y) 2016 9(1) 46
Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
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Khanday I., Das S., Chongloi G.L., Bansal M., Grossniklaus U., Vijayraghavan U.
Plant Physiol. 2016 172(1) 372-88
Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
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Tanaka W., Toriba T., Ohmori Y., Yoshida A., Kawai A., Mayama-Tsuchida T., Ichikawa H., Mitsuda N., Ohme-Takagi M., Hirano H.Y.
Plant Cell 2012 24(1) 80-95
The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet.
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Zhou, Dao-Xiu
Plant Physiol. 2007 144(1) 380-390
A WUSCHEL-LIKE HOMEOBOX Gene Represses a YABBY Gene Expression Required for Rice Leaf Development.
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Toriba,T., Harada,K., Takamura,A., Nakamura,H., Ichikawa,H., Suzaki,T. and Hirano,H.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 2007 277 457-468
Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1.
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Jang S, Hur J, Kim SJ, Han MJ, Kim SR, An G.
Plant Mol. Biol. 2004 56(1) 133-143
Ectopic expression of OsYAB1 causes extra stamens and carpels in rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to heat( GO:0009408 )
internode patterning( GO:0080006 )
gibberellin metabolic process( GO:0009685 )
gibberellin catabolic process( GO:0045487 )
regulation of gibberellic acid mediated signaling( GO:0009937 )
leaf development( GO:0048366 )
flower development( GO:0009908 )
nucleus( GO:0005634 )
cell differentiation( GO:0030154 )
metal ion binding( GO:0046872 )
meristem maintenance( GO:0010073 )
floral organ development( GO:0048437 )
inflorescence development( GO:0010229 )
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Trait Ontology
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leaf development trait( TO:0000655 )
flower development trait( TO:0000622 )
inflorescence development trait( TO:0000621 )
plant height( TO:0000207 )
gibberellic acid content( TO:0002675 )
internode length( TO:0000145 )
heat tolerance( TO:0000259 )
spikelet anatomy and morphology trait( TO:0000657 )
flower organ size( TO:0002600 )
floral organ number( TO:0006038 )
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Plant Ontology
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leaf development stage( PO:0001050 )
floral organ primordium( PO:0025477 )
flower development stage( PO:0007615 )
vascular leaf primordium( PO:0000017 )
inflorescence development stage( PO:0001083 )
bract primordium( PO:0025487 )
spikelet( PO:0009051 )
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Related Strains
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Phenotype images
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Last updated
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Feb 12, 2025
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Update info.