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Basic Information
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CGSNL Gene Symbol
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TDR
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Gene Symbol Synonym
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tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5
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CGSNL Gene Name
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TAPETUM DEGENERATION RETARDATION
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Gene Name Synonym
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tapetum degeneration retardation, basic helix loop helix 5, basic/helix-loop-helix 5, Myelocytomatosis oncogene transcription factor 5
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Protein Name
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BASIC HELIX LOOP HELIX 5
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Allele
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tdr, tdr-Cas9
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Chromosome No.
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2
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Explanation
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Q6YUS3.
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Trait Class
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Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK119580
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MSU ID
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LOC_Os02g02820.1
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RAP ID
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Os02g0120500
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
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RAP-DB
(
IRGSP 1.0
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Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Tang J., Lei D., Yang J., Chen S., Wang X., Huang X., Zhang S., Cai Z., Zhu S., Wan J., Jia G.
Plant Biotechnol. J. 2024 22(9) 2410-2423
OsALKBH9-mediated m6A demethylation regulates tapetal PCD and pollen exine accumulation in rice.
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Yin W., Yang H., Feng P., Qi P., Li B., Li Y., Huang Q., Peng Y., Wang N., Hu Y.
Sci Rep 2024 14(1) 19412
Rapid function analysis of OsiWAK1 using a Dual-Luciferase assay in rice.
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Kamara N., Jiao Y., Huang W., Cao L., Zhu L., Zhao C., Huang X., Shivute F.N., Liu X., Wu J., Shahid M.Q.
Front Plant Sci 2023 14 1229870
Comparative cytological and transcriptome analyses of <i>ny2</i> mutant delayed degeneration of tapetal cells and promotes abnormal microspore development in neo-tetraploid rice.
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Wang N., Deng Y., Zhang L., Wan Y., Lei T., Yang Y., Wu C., Du H., Feng P., Yin W., He G.
Mol Plant 2023 16(5) 829-848
UDP-glucose epimerase 1, moonlighting as a transcriptional activator, is essential for tapetum degradation and male fertility in rice.
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Han Y., Jiang S.Z., Zhong X., Chen X., Ma C.K., Yang Y.M., Mao Y.C., Zhou S.D., Zhou L., Zhang Y.F., Huang X.H., Zhang H., Li L.G., Zhu J., Yang Z.N.
Plant Biotechnol. J. 2023 21(8) 1659-1670
Low temperature compensates for defective tapetum initiation to restore the fertility of the novel TGMS line OsTMS15.
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Hsieh K.T., Wu C.C., Lee S.J., Chen Y.H., Shiue S.Y., Liao Y.C., Liu S.H., Wang I.W., Tseng C.S., Li W.H., Wang C.S., Chen L.J.
PLoS ONE 2023 18(10) e0292400
Rice GA3ox1 modulates pollen starch granule accumulation and pollen wall development.
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Zou T., Xiong P., Zhou F., Zhou D., Chen H., Li G., Peng K., Zheng K., Han Y., Zhang K., Zhang X., Yang S., Deng Q., Wang S., Zhu J., Liang Y., Sun C., Yu X., Liu H., Wang L., Li P., Li S.
Plant J. 2022 111(6) 1509-1526
Grass-specific ABERRANT MICROSPORE DEVELOPMENT 1 is required for maintaining pollen fertility in rice.
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Yin W., Yang H., Wang Y., Feng P., Deng Y., Zhang L., He G., Wang N.
Plant Physiol. 2022 189(3) 1570-1586
Oryza sativa PECTIN DEFECTIVE tapetum1 affects anther development through a pectin-mediated signaling pathway in rice.
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Wu L., Jing X., Zhang B., Chen S., Xu R., Duan P., Zou D., Huang S., Zhou T., An C., Luo Y., Li Y.
Nat Commun 2022 13(1) 2055
A natural allele of OsMS1 responds to temperature changes and confers thermosensitive genic male sterility.
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Han Y., Zhou S.D., Fan J.J., Zhou L., Shi Q.S., Zhang Y.F., Liu X.L., Chen X., Zhu J., Yang Z.N.
Rice (N Y) 2021 14(1) 4
OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice.
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Ma K., Han J., Zhang Z., Li H., Zhao Y., Zhu Q., Xie Y., Yao-Guang Liu, Chen L.
J Integr Plant Biol 2021 63(11) 1982-1994
OsEDM2L mediates m6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation.
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Xie X., Zhang Z., Zhao Z., Xie Y., Li H., Ma X., Liu Y.G., Chen L.
J. Exp. Bot. 2020 71(9) 2551-2560
The mitochondrial aldehyde dehydrogenase OsALDH2b negatively regulates tapetum degeneration in rice.
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Araki S., Le N.T., Koizumi K., Villar-Briones A., Nonomura K.I., Endo M., Inoue H., Saze H., Komiya R.
Nat Commun 2020 11(1) 3115
miR2118-dependent U-rich phasiRNA production in rice anther wall development.
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Ren L., Zhao T., Zhang L., Du G., Shen Y., Tang D., Li Y., Luo Q., Cheng Z.
Plant J. 2020
Defective Microspore Development 1 is required for microspore cell integrity and pollen wall formation in rice.
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Malik N., Ranjan R., Parida S.K., Agarwal P., Tyagi A.K.
Plant J. 2020 101(6) 1411-1429
Mediator subunit OsMED14_1 plays an important role in rice development.
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Basnet R., Hussain N., Shu Q.
Rice (N Y) 2019 12(1) 66
OsDGD2beta is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers male sterility in Rice.
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Duan Y., Chen Y., Li W., Pan M., Qu X., Shi X., Cai Z., Liu H., Zhao F., Kong L., Ye Y., Wang F., Xue Y., Wu W.
Plant Physiol. 2019 181(4) 1600-1614
<i>RETINOBLASTOMA-RELATED</i> Genes Specifically Control Inner Floral Organ Morphogenesis and pollen Development in Rice.
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Yang Z., Liu L., Sun L., Yu P., Zhang P., Abbas A., Xiang X., Wu W., Zhang Y., Cao L., Cheng S.
Plant Mol. Biol. 2019 99(1-2) 175-191
osms1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.
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Chen S., Zhao H., Luo T., Liu Y., Nie X., Li H.
Plants (Basel) 2019 8(8)
Characteristics and Expression Pattern of <i>MYC</i> Genes in <i>Triticum aestivum</i>, <i>Oryza sativa</i>, and <i>Brachypodium distachyon</i>.
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Yang Z., Sun L., Zhang P., Zhang Y., Yu P., Liu L., Abbas A., Xiang X., Wu W., Zhan X., Cao L., Cheng S.
Plant J. 2019 99(5) 844-861
TDR INTERACTING PROTEIN 3, encoding a PHD-finger transcription factor, regulates Ubisch bodies and pollen wall formation in rice.
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Bai W., Wang P., Hong J., Kong W., Xiao Y., Yu X., Zheng H., You S., Lu J., Lei D., Wang C., Wang Q., Liu S., Liu X., Tian Y., Chen L., Jiang L., Zhao Z., Wu C., Wan J.
Plant Physiol. 2019 181(3) 1223-1238
<i>Earlier Degraded Tapetum1</i> (<i>EDT1</i>) Encodes an ATP-citrate lyase Required for Tapetum Programmed Cell Death.
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Zhao T., Ren L., Chen X., Yu H., Liu C., Shen Y., Shi W., Tang D., Du G., Li Y., Ma B., Cheng Z.
Plant Cell 2018 30(12) 3024-3037
The OsRR24/LEPTO1 Type-B Response Regulator is Essential for the Organization of Leptotene Chromosomes in Rice Meiosis.
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Chen Z.S., Liu X.F., Wang D.H., Chen R., Zhang X.L., Xu Z.H., Bai S.N.
Plant Physiol. 2018 176(1) 819-835
Transcription Factor OsTGA10 Is a Target of the MADS Protein OsMADS8 and Is Required for Tapetum Development.
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Yang Z., Zhang Y., Sun L., Zhang P., Liu L., Yu P., Xuan D., Xiang X., Wu W., Cao L., Cheng S.
Gene 2018 649 63-73
Identification of CYP703A3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.
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Ni E., Zhou L., Li J., Jiang D., Wang Z., Zheng S., Qi H., Zhou Y., Wang C., Xiao S., Liu Z., Zhou H., Zhuang C.
Front Plant Sci 2018 9 1217
<i>OsCER1</i> Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (<i>Oryza sativa</i> L.).
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Wei K., Chen H.
BMC Plant Biol. 2018 18(1) 309
Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat.
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Sun L., Xiang X., Yang Z., Yu P., Wen X., Wang H., Abbas A., Muhammad Khan R., Zhang Y., Cheng S., Cao L.
Int J Mol Sci 2018 19(12)
<i>OsGPAT3</i> Plays a Critical Role in anther wall Programmed Cell Death and pollen Development in Rice.
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Lin H., Yu J., Pearce S.P., Zhang D., Wilson Z.A.
Plant J. 2017 92(6) 1076-1091
RiceAntherNet: a gene co-expression network for identifying anther and pollen development genes.
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Ko S.S., Li M.J., Lin Y.J., Hsing H.X., Yang T.T., Chen T.K., Jhong C.M., Ku M.S.
Front Plant Sci 2017 8 1258
Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and pollen Development in Rice.
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Men X., Shi J., Liang W., Zhang Q., Lian G., Quan S., Zhu L., Luo Z., Chen M., Zhang D.
J. Exp. Bot. 2017 68(3) 513-526
Glycerol-3-Phosphate Acyltransferase 3 (OsGPAT3) is required for anther development and male fertility in rice.
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Yang X., Liang W., Chen M., Zhang D., Zhao X., Shi J.
Planta 2017
Rice fatty Acyl-CoA Synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.
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Zhao S., Zhao L., Liu F., Wu Y., Zhu Z., Sun C., Tan L.
J Integr Plant Biol 2016 58(12) 983-996
NARROW AND ROLLED LEAF 2 regulates leaf shape, male fertility, and seed size in rice.
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Ko S.S., Li M.J., Sun-Ben Ku M., Ho Y.C., Lin Y.J., Chuang M.H., Hsing H.X., Lien Y.C., Yang H.T., Chang H.C., Chan M.T.
Plant Cell 2014 26(6) 2486-2504
The bHLH142 Transcription Factor Coordinates with TDR1 to Modulate the Expression of EAT1 and Regulate pollen Development in Rice.
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Fu Z., Yu J., Cheng X., Zong X., Xu J., Chen M., Li Z., Zhang D., Liang W.
Plant Cell 2014 26(4) 1512-1524
The Rice Basic Helix-Loop-Helix Transcription Factor TDR INTERACTING PROTEIN2 Is a Central Switch in Early Anther Development.
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Marathi B., Jena K.K.
Euphytica 2014 201 1-14
Floral traits to enhance outcrossing for higher hybrid seed production in rice: present status and future prospects
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Li L., Li Y., Song S., Deng H., Li N., Fu X., Chen G., Yuan L.
Planta 2014
An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.
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Ji C., Li H., Chen L., Xie M., Wang F., Chen Y., Liu Y.G.
Mol Plant 2013 6(5) 1715-8
A Novel Rice bHLH Transcription Factor, DTD, Acts Coordinately with TDR in Controlling Tapetum Function and Pollen Development.
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Niu N., Liang W., Yang X., Jin W., Wilson Z.A., Hu J., Zhang D.
Nat Commun 2013 4 1445
EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice.
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Kim S.H., Oikawa T., Kyozuka J., Wong H.L., Umemura K., Kishi-Kaboshi M., Takahashi A., Kawano Y., Kawasaki T., Shimamoto K.
Plant Cell Physiol. 2012 53(4) 740-54
The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity.
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Tan H., Liang W., Hu J., Zhang D.
Dev. Cell 2012 22(6) 1127-37
MTR1 Encodes a Secretory fasciclin glycoprotein Required for Male Reproductive Development in Rice.
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Liu Z., Bao W., Liang W., Yin J., Zhang D.
J Integr Plant Biol 2010 52(7) 670-8
Identification of GAMYB-4 and analysis of the regulatory role of GAMYB in rice anther development.
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Zhang D,Liang W,Yin C,Zong J,Gu F,Zhang D
Plant Physiol. 2010 154(1) 149-62
OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice.
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Da-Sheng Zhang, Wan-Qi Liang, Yuan Z., Li N., Shi J., Wang J., Yu-Min Liu, Wen-Juan Yu, Da-Bing Zhang
Mol Plant 2008 1(4) 599-610
Tapetum degeneration retardation is critical for aliphatic metabolism and gene regulation during rice pollen development.
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Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, Guo J, Liang W, Chen L, Yin J, Ma H, Wang J, Zhang D.
Plant Physiol. 2006 141(4) 1167-84
Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis.
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Li N, Zhang DS, Liu HS, Yin CS, Li XX, Liang WQ, Yuan Z, Xu B, Chu HW, Wang J, Wen TQ, Huang H, Luo D, Ma H, Zhang DB.
Plant Cell 2006 18(11) 2999-3014
The rice tapetum degeneration retardation gene is required for tapetum degradation and anther development.
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DB Reference
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Gramene ID
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GR:0020145
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Ontologies
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Gene Ontology
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pollen exine formation( GO:0010584 )
response to temperature stimulus( GO:0009266 )
anther morphogenesis( GO:0048654 )
DNA binding( GO:0003677 )
nucleus( GO:0005634 )
transcription regulator activity( GO:0030528 )
regulation of transcription( GO:0045449 )
anther development( GO:0048653 )
pollen development( GO:0009555 )
tapetal cell fate specification( GO:0010234 )
tapetal cell differentiation( GO:0048657 )
tapetal layer development( GO:0048658 )
pollen wall assembly( GO:0010208 )
chromatin binding( GO:0003682 )
protein dimerization activity( GO:0046983 )
RNA polymerase II regulatory transcription factor site sequence-specific DNA binding( GO:0000978 )
regulation of transcription, DNA-dependent( GO:0006355 )
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Trait Ontology
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temperature response trait( TO:0000432 )
male sterility( TO:0000437 )
pollen abortion type( TO:0000218 )
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Plant Ontology
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inflorescence( PO:0009049 )
anther( PO:0009066 )
anther development stage( PO:0001004 )
anther wall tapetum( PO:0009071 )
pollen development stage( PO:0001007 )
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Related Strains
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Phenotype images
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Last updated
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Feb 17, 2025
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