遺伝子 - 詳細

検索リストダウンロード trait classification

詳細 - 遺伝子

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Basic Information

CGSNL 遺伝子シンボル

WX1

遺伝子シンボルシノニム

wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx

CGSNL 遺伝子名

GLUTINOUS ENDOSPERM

遺伝子名シノニム

もち性, glutinous endosperm, waxy, Waxy, WAXY, "Granule-bound starch synthase 1, chloroplastic/amyloplastic", Granule-bound starch synthase I, UDP-glycogen synthase, "Granule-bound starch synthase, chloroplast precursor", glycogen [starch] synthase, Granule-bound glycogen synthase, UDPG-glycogen transglucosylase, uridine diphosphoglucose-glycogen glucosyltransferase, glycogen [starch] synthetase, Granule-bound glycogen [starch] synthase, UDPG-glycogen synthetase, granule bound starch synthase I, granule-bound starch synthase 1, granule-bound starch synthase I

タンパク質名

GRANULE-BOUND STARCH SYNTHASE I

対立遺伝子

wx-op, Wx-in, Wx-a(Wx), Wx-b(wx), Wx-mq, Wx-hp, Wx1-1(Wx-oz: Hokkai287), Wx-I, Wx-II, Wx-III , Wxa, Web, GBSSIL, Wx-g3, Wx-lv, Wx-in, Wx-la/Wx-mw, Wx-mp, Wx-op/Wx-hp

染色体番号

解説

胚乳は白色で不透明。ヨードヨードカリ反応は褐色。 EC=2.4.1.242 X58228. A2Y8X2(indica). P0C585. Q0DEV5(japonica). EU871049(Wx-hp:haopi), AB535524(Wx-oz:Hokkai287), AB008794(Wx-b:Taichung65), AB008795(Wx-a:Patpaku). X53694, AF515480, AF515481, AF515482, AF515483, AF031162, AP002542, AF141954, AF141955, X65183, X64108, AB066093, X62134, AF488413. HQ712158-HQ712165. AY136767-AY136784. AF092443, AF092444. AB281428-AB281462. DQ280600-DQ280604, DQ280606-DQ280609, DQ280611-DQ280623, DQ280625-DQ280632, DQ280634-DQ280637, DQ280640-DQ280646, DQ280648-DQ280671, DQ280672-DQ280675, AB066094, DQ415640. GU727213-GU727295 (O.sativa and other wild rice species). FJ811412-FJ811452 (Oryza glaberrima, Oryza barthii, Oryza nivara). EF600036 (O. australiensis), EF600037 (O. rufipogon). DQ901803-DQ901832 (wild rice species). EF069974-EF070045 (O. sativa and wild rice species). JQ415868-JQ415911 (wild rice species). X86325 (indica, 5' upstream). KJ871342-KJ871345 (indica, includes exon 1 and intron 1). HQ712163. a candidate gene for qK6.1 (QTL for K concentration). GO:1901698: response to nitrogen compound. TO:0001069: cooking quality trait.

形質クラス

種子 - 生理的な特色 - 貯蔵物質
QTLの特性 - 粒品質
種子 - 生理的な特色 - 休眠性
生化学的性質
耐性、抵抗性 - ストレス耐性

発現

Sequence/Locus

cDNA Accession No.

AK070431

MSU ID

LOC_Os06g04200.1
LOC_Os06g04200.2
LOC_Os06g04200.3
LOC_Os06g04200.4

RAP ID

Os06g0133000

Links

Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )

INSD Accession List
(Test version)

Link to INSD Accession List

マップ

位置情報(cM)

22.0

リンケージマップ

Classical linkage map

文献

Sun C., Wang Y., Yang X., Tang L., Wan C., Liu J., Chen C., Zhang H., He C., Liu C., Wang Q., Zhang K., Zhang W., Yang B., Li S., Zhu J., Sun Y., Li W., Zhou Y., Wang P., Deng X.
Plant Biotechnol. J. 2023 21(3) 621-634

MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.

Zheng Y., Thi K.M., Lin L., Xie X., Khine E.E., Nyein E.E., Lin M.H.W., New W.W., Aye S.S., Wu W.
Front Plant Sci 2023 14 1250854

Genome-wide association study of cooking-caused grain expansion in rice (Oryza sativa L.).

Jin S.K., Xu L.N., Leng Y.J., Zhang M.Q., Yang Q.Q., Wang S.L., Jia S.W., Song T., Wang R.A., Tao T., Liu Q.Q., Cai X.L., Gao J.P.
Plant Biotechnol. J. 2023

The OsNAC24-OsNAP protein complex activates OsGBSSI and OsSBEI expression to fine-tune starch biosynthesis in rice endosperm.

Gu Z., Gong J., Zhu Z., Li Z., Feng Q., Wang C., Zhao Y., Zhan Q., Zhou C., Wang A., Huang T., Zhang L., Tian Q., Fan D., Lu Y., Zhao Q., Huang X., Yang S., Han B.
Nat. Genet. 2023 55(10) 1745-1756

Structure and function of rice hybrid genomes reveal genetic basis and optimal performance of heterosis.

Hu Z., Niu F., Yan P., Wang K., Zhang L., Yan Y., Zhu Y., Dong S., Ma F., Lan D., Liu S., Xin X., Wang Y., Yang J., Cao L., Wu S., Luo X.
J Integr Plant Biol 2023 65(7) 1782-1793

The kinase OsSK41/OsGSK5 negatively regulates amylose content in rice endosperm by affecting the interaction between OsEBP89 and OsBP5.

Liu M., Fan F., He S., Guo Y., Chen G., Li N., Li N., Yuan H., Si F., Yang F., Li S.
Rice (N Y) 2022 15(1) 17

Creation of Elite Rice with High-Yield, Superior-Quality and High Resistance to Brown Planthopper Based on Molecular Design.

Cao R., Zhao S., Jiao G., Duan Y., Ma L., Dong N., Lu F., Zhu M., Shao G., Hu S., Sheng Z., Zhang J., Tang S., Wei X., Hu P.
Plant Commun 2022 3(6) 100463

OPAQUE3, encoding a transmembrane bZIP transcription factor, regulates endosperm storage protein and starch biosynthesis in rice.

Cai Y., Zhang W., Fu Y., Shan Z., Xu J., Wang P., Kong F., Jin J., Yan H., Ge X., Wang Y., You X., Chen J., Li X., Chen W., Chen X., Ma J., Tang X., Zhang J., Bao Y., Jiang L., Wang H., Wan J.
Plant Biotechnol. J. 2022 20(7) 1387-1401

Du13 encodes a C2 H2 zinc-finger protein that regulates Wxb pre-mRNA splicing and microRNA biogenesis in rice endosperm.

Jin S.K., Zhang M.Q., Leng Y.J., Xu L.N., Jia S.W., Wang S.L., Song T., Wang R.A., Yang Q.Q., Tao T., Cai X.L., Gao J.P.
Front Plant Sci 2022 13 905148

OsNAC129 Regulates Seed Development and Plant Growth and Participates in the Brassinosteroid Signaling Pathway.

Park J.R., Kim E.G., Jang Y.H., Kim K.M.
BMC Plant Biol. 2021 21(1) 263

Screening and identification of genes affecting grain quality and spikelet fertility during high-temperature treatment in grain filling stage of rice.

Ali I., Ullah S., Iqbal A., Quan Z., Liang H., Ahmad S., Muhammad I., Amanullah, Imran, Guo Z., Wei S., Jiang L.
BMC Plant Biol. 2021 21(1) 600

Combined application of biochar and nitrogen fertilizer promotes the activity of starch metabolism enzymes and the expression of related genes in rice in a dual cropping system.

Liu X., Luo J., Li T., Yang H., Wang P., Su L., Zheng Y., Bao C., Zhou C.
Rice (N Y) 2021 14(1) 25

SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other Histone Modifications.

Tonosaki K., Ono A., Kunisada M., Nishino M., Nagata H., Sakamoto S., Kijima S.T., Furuumi H., Nonomura K.I., Sato Y., Ohme-Takagi M., Endo M., Comai L., Hatakeyama K., Kawakatsu T., Kinoshita T.
Plant Cell 2021 33(1) 85-103

Mutation of the imprinted gene OsEMF2a induces autonomous endosperm development and delayed cellularization in rice.

Cu S.T., Warnock N.I., Pasuquin J., Dingkuhn M., Stangoulis J.
Sci Rep 2021 11(1) 19230

A high-resolution genome-wide association study of the grain ionome and agronomic traits in rice Oryza sativa subsp. indica.

Zhang H., Jang S.G., Lar S.M., Lee A.R., Cao F.Y., Seo J., Kwon S.W.
Plants (Basel) 2021 10(6)

Genome-Wide Identification and Genetic Variations of the starch synthase Gene Family in Rice.

Jiang L., Zhong H., Jiang X., Zhang J., Huang R., Liao F., Deng Y., Liu Q., Huang Y., Wang H., Tao Y., Zheng J.
Front Plant Sci 2021 12 814928

Identification and Pleiotropic Effect Analysis of GSE5 on Rice Chalkiness and grain shape.

Paul P., Dhatt B.K., Miller M., Folsom J.J., Wang Z., Krassovskaya I., Liu K., Sandhu J., Yu H., Zhang C., Obata T., Staswick P., Walia H.
Plant Physiol. 2020 182(2) 933-948

MADS78 and MADS79 Are Essential Regulators of Early Seed Development in Rice.

Baysal C., He W., Drapal M., Villorbina G., Medina V., Capell T., Khush G.S., Zhu C., Fraser P.D., Christou P.
Proc. Natl. Acad. Sci. U.S.A. 2020 117(42) 26503-26512

Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming.

Hu L., Tu B., Yang W., Yuan H., Li J., Guo L., Zheng L., Chen W., Zhu X., Wang Y., Qin P., Ma B., Li S.
Plant Physiol. 2020 183(3) 1073-1087

Mitochondria-Associated pyruvate kinase Complexes Regulate Grain Filling in Rice.

Wang W., Wei X., Jiao G., Chen W., Wu Y., Sheng Z., Hu S., Xie L., Wang J., Tang S., Hu P.
J Integr Plant Biol 2019

GBSS-binding protein, encoding a CBM48 domain-containing protein, affects rice quality and yield.

Bello B.K., Hou Y., Zhao J., Jiao G., Wu Y., Li Z., Wang Y., Tong X., Wang W., Yuan W., Wei X., Zhang J.
Plant Biotechnol. J. 2019 17(7) 1222-1235

NF-yb1-YC12-bHLH144 complex directly activates Wx to regulate grain quality in rice (Oryza sativa L.).

Fan C., Wang G., Wang Y., Zhang R., Wang Y., Feng S., Luo K., Peng L.
Int J Mol Sci 2019 20(20)

sucrose synthase Enhances Hull Size and grain weight by Regulating Cell Division and Starch Accumulation in Transgenic Rice.

Chen C., He B., Liu X., Ma X., Liu Y., Yao H.Y., Zhang P., Yin J., Wei X., Koh H.J., Yang C., Xue H.W., Fang Z., Qiao Y.
Plant Biotechnol. J. 2019

Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP1) regulates starch biosynthesis and seed development via heterotetramer formation in rice (Oryza sativa L.).

Lee H.S., Hwang W.H., Jeong J.H., Ahn S.H., Baek J.S., Jeong H.Y., Park H.K., Ku B.I., Yun J.T., Lee G.H., Choi K.J.
BMC Genomics 2019 20(1) 18

Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage.

Huang X., Peng X., Xie F., Mao W., Chen H., Sun M.X.
New Phytol. 2018 218(2) 463-469

The stereotyped positioning of the generative cell associated with vacuole dynamics is not required for male gametogenesis in rice pollen.

Zhao Q., Feng Q., Lu H., Li Y., Wang A., Tian Q., Zhan Q., Lu Y., Zhang L., Huang T., Wang Y., Fan D., Zhao Y., Wang Z., Zhou C., Chen J., Zhu C., Li W., Weng Q., Xu Q., Wang Z.X., Wei X., Han B., Huang X.
Nat. Genet. 2018 50(2) 278-284

Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.

Wang W., Mauleon R., Hu Z., Chebotarov D., Tai S., Wu Z., Li M., Zheng T., Fuentes R.R., Zhang F., Mansueto L., Copetti D., Sanciangco M., Palis K.C., Xu J., Sun C., Fu B., Zhang H., Gao Y., Zhao X., Shen F., Cui X., Yu H., Li Z., Chen M., Detras J., Zhou Y., Zhang X., Zhao Y., Kudrna D., Wang C., Li R., Jia B., Lu J., He X., Dong Z., Xu J., Li Y., Wang M., Shi J., Li J., Zhang D., Lee S., Hu W., Poliakov A., Dubchak I., Ulat V.J., Borja F.N., Mendoza J.R., Ali J., Li J., Gao Q., Niu Y., Yue Z., Naredo M.E.B., Talag J., Wang X., Li J., Fang X., Yin Y., Glaszmann J.C., Zhang J., Li J., Hamilton R.S., Wing R.A., Ruan J., Zhang G., Wei C., Alexandrov N., McNally K.L., Li Z., Leung H.
Nature 2018 557(7703) 43-49

Genomic variation in 3,010 diverse accessions of Asian cultivated rice.

Wang L., Yuan J., Ma Y., Jiao W., Ye W., Yang D.L., Yi C., Chen Z.J.
Mol Plant 2018 11(2) 300-314

Rice Interploidy Crosses Disrupt Epigenetic Regulation, Gene Expression, and Seed Development.

Long W., Wang Y., Zhu S., Jing W., Wang Y., Ren Y., Tian Y., Liu S., Liu X., Chen L., Wang D., Zhong M., Zhang Y., Hu T., Zhu J., Hao Y., Zhu X., Zhang W., Wang C., Zhang W., Wan J.
Plant Physiol. 2018 177(2) 698-712

FLOURY shrunken endosperm1 Connects Phospholipid Metabolism and Amyloplast Development in Rice.

Jiang S., Sun S., Bai L., Ding G., Wang T., Xia T., Jiang H., Zhang X., Zhang F.
PLoS ONE 2017 12(7) e0181037

Resequencing and variation identification of whole genome of the japonica rice variety "Longdao24" with high yield.

Pu C.X., Han Y.F., Zhu S., Song F.Y., Zhao Y., Wang C.Y., Zhang Y.C., Yang Q., Wang J., Bu S.L., Sun L.J., Zhang S.W., Zhang S.Q., Sun D.Y., Sun Y.
Plant Cell 2017 29(1) 70-89

The Rice Receptor-Like Kinases DWARF AND RUNTISH SPIKELET1 and 2 Repress Cell Death and Affect Sugar Utilization during Reproductive Development.

Kim J.S., Chae S., Jun K.M., Pahk Y.M., Lee T.H., Chung P.J., Kim Y.K., Nahm B.H.
Rice (N Y) 2017 10(1) 16

Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.

Wambugu P., Ndjiondjop M.N., Furtado A., Henry R.
Plant Biotechnol. J. 2017

Sequencing of bulks of segregants allows dissection of genetic control of amylose content in rice.

Li L.F., Li Y.L., Jia Y., Caicedo A.L., Olsen K.M.
Nat. Genet. 2017 49(5) 811-814

Signatures of adaptation in the weedy rice genome.

Crofts N., Sugimoto K., Oitome N.F., Nakamura Y., Fujita N.
Plant Mol. Biol. 2017 94(4-5) 399-417

Differences in specificity and compensatory functions among three major starch synthases determine the structure of amylopectin in rice endosperm.

Xu E., Chen M., He H., Zhan C., Cheng Y., Zhang H., Wang Z.
Front Plant Sci 2016 7 2006

Proteomic Analysis Reveals Proteins Involved in Seed Imbibition under Salt Stress in Rice.

Zhou W., Wang X., Zhou D., Ouyang Y., Yao J.
Plant Biotechnol. J. 2016

Overexpression of the 16-kDa alpha-amylase/trypsin inhibitor RAG2 improves grain yield and quality of rice.

Ordonio R.L., Matsuoka M.
Proc. Natl. Acad. Sci. U.S.A. 2016

Increasing resistant starch content in rice for better consumer health.

Zhou H., Wang L., Liu G., Meng X., Jing Y., Shu X., Kong X., Sun J., Yu H., Smith S.M., Wu D., Li J.
Proc. Natl. Acad. Sci. U.S.A. 2016

Critical roles of soluble starch synthase SSIIIa and granule-bound starch synthase Waxy in synthesizing resistant starch in rice.

Su J., Hu C., Yan X., Jin Y., Chen Z., Guan Q., Wang Y., Zhong D., Jansson C., Wang F., Schnürer A., Sun C.
Nature 2015 523(7562) 602-6

Expression of barley SUSIBA2 transcription factor yields high-starch low-methane rice.

Wu Y.P., Pu C.H., Lin H.Y., Huang H.Y., Huang Y.C., Hong C.Y., Chang M.C., Lin Y.R.
Plant Sci. 2015 233 44-52

Three novel alleles of FLOURY ENDOSPERM2 (flo2) confer dull grains with low amylose content in rice.

Liu D., Wang W., Cai X.
Plant Biotechnol. J. 2014

Modulation of amylose content by structure-based modification of OsGBSS1 activity in rice (Oryza sativa L.).

Choudhury B.I., Khan M.L., Dayanandan S.
BMC Genet. 2014 15 71

Patterns of nucleotide diversity and phenotypes of two domestication related genes (OsC1 and Wx) in indigenous rice varieties in Northeast India.

Liu S.J., Xu H.H., Wang W.Q., Li N., Wang W.P., Møller IM., Song S.Q.
Physiol Plant 2014

A proteomic analysis of rice seed germination as affected by high temperature and ABA treatment.

Pusadee,T., Oupkaew,P., Rerkasem,B., Jamjod,S. and Schaal,B.
Ann. Appl. Biol. 2014

Natural and Human Mediated Selection in a Landrace of Thai Rice (Oryza sativa L.)

Fujita N.
AGri-Bioscience Monographs 2014 4(1) 1-18

Starch Biosynthesis in Rice Endosperm

Liu D.R., Huang W.X., Cai X.L.
Plant Sci. 2013 210 141-50

Oligomerization of rice granule-bound starch synthase 1 modulates its activity regulation.

Wang J.C., Xu H., Zhu Y., Liu Q.Q., Cai X.L.
J. Exp. Bot. 2013 64(11) 3453-66

OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm.

Ai,B., Wang,Z.S. and Ge,S.
Evolution 2012 66(10) 3302-3310

Genome size is not correlated with effective population size in the oryza species

Wei X., Qiao W.H., Chen Y.T., Wang R.S., Cao L.R., Zhang W.X., Yuan N.N., Li Z.C., Zeng H.L., Yang Q.W.
Mol. Ecol. 2012 21(20) 5073-87

Domestication and geographic origin of Oryza sativa in China: insights from multilocus analysis of nucleotide variation of O. sativa and O. rufipogon.

Lu F.H., Park Y.J.
Genet Res (Camb) 2012 94 179-189

Sequence variations in OsAGPase significantly associated with amylose content and viscosity properties in rice (Oryza sativa L.)

Lu F.H., Park Y.J.
J. Cereal Sci. 2012 56 706-712

An SNP downstream of the OsBEIIb gene is significantly associated with amylose content and viscosity properties in rice (Oryza sativa L.)

Huang X., Zhao Y., Wei X., Li C., Wang A., Zhao Q., Li W., Guo Y., Deng L., Zhu C., Fan D., Lu Y., Weng Q., Liu K., Zhou T., Jing Y., Si L., Dong G., Huang T., Lu T., Feng Q., Qian Q., Li J., Han B.
Nat. Genet. 2012 44(1) 32-9

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm.

Momma M., Fujimoto Z.
Biosci. Biotechnol. Biochem. 2012 76(8) 1591-5

Interdomain Disulfide Bridge in the Rice Granule Bound Starch Synthase I Catalytic Domain as Elucidated by X-Ray Structure Analysis.

Ozawa K., Wakasa Y., Ogo Y., Matsuo K., Kawahigashi H., Takaiwa F.
Plant and Cell Physiology 2012 53 755-761

Development of an efficient agrobacterium-mediated gene targeting system for rice and analysis of rice knockouts lacking granule-bound starch synthase (Waxy) and beta1,2-xylosyltransferase

Yan CJ,Tian ZX,Fang YW,Yang YC,Li J,Zeng SY,Gu SL,Xu CW,Tang SZ,Gu MH
Theor. Appl. Genet. 2011 122(1) 63-76

Genetic analysis of starch paste viscosity parameters in glutinous rice (Oryza sativa L.).

Li C., Wang Y., Liu L., Hu Y., Zhang F., Mergen S., Wang G., Schläppi MR., Chu C.
PLoS Genet. 2011 7(7) e1002196

A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency.

Li,Z.M., Zheng,X.M. and Ge,S.
Theor. Appl. Genet. 2011 123(1) 21-31

Genetic diversity and domestication history of African rice (Oryza glaberrima) as inferred from multiple gene sequences

Sun,M.M., Abdula,S.E., Lee,H.J., Cho,Y.C., Han,L.Z., Koh,H.J. and Cho,Y.G.
PLoS One 2011 6 (4) e18385

Molecular aspect of good eating quality formation in japonica rice

Tran N.A., Daygon V.D., Resurreccion A.P., Cuevas R.P., Corpuz H.M., Fitzgerald M.A.
Theor. Appl. Genet. 2011 123(4) 519-25

A single nucleotide polymorphism in the Waxy gene explains a significant component of gel consistency.

Yu,G., Olsen,K.M. and Schaal,B.A.
Mol. Biol. Evol. 2011 28(1) 659-671

Molecular Evolution of the Endosperm Starch Synthesis Pathway Genes in Rice (Oryza sativa L.) and Its Wild Ancestor, O. rufipogon L

Ikuo Ando, Hiroyuki Sato, Noriaki Aoki, Yasuhiro Suzuki, Hideyuki Hirabayashi, Makoto Kuroki, Hiroyuki Shimizu, Tsuyu Ando and Yoshinobu Takeuchi
Breeding Science 2010 60 187-194

Genetic analysis of the low-amylose characteristics of rice cultivars Oborozuki and Hokkai-PL9

Zheng,X.M. and Ge,S.
Mol. Ecol. 2010 19(12) 2439-2454

Ecological divergence in the presence of gene flow in two closely related Oryza species (Oryza rufipogon and O. nivara)

Liu L, Ma X, Liu S, Zhu C, Jiang L, Wang Y, Shen Y, Ren Y, Dong H, Chen L, Liu X, Zhao Z, Zhai H, Wan J.
Plant Mol. Biol. 2009 71 609-26

Identification and characterization of a novel Waxy allele from a Yunnan rice landrace.

Shapter,F.M., Eggler,P., Lee,L.S. and Henry,R.J.
J. Cereal Sci. 2009 49(1) 4-11

Variation in Granule Bound Starch Synthase I (GBSSI) loci amongst Australian wild cereal relatives (Poaceae)

Tian,Z., Qian,Q., Liu,Q., Yan,M., Liu,X., Yan,C., Liu,G., Gao,Z., Tang,S., Zeng,D., Wang,Y., Yu,J., Gu,M. and Li,J.
Proc. Natl. Acad. Sci. U.S.A. 2009 106(51) 21760-5

Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities

Mikami,I., Uwatoko,N., Ikeda,Y., Yamaguchi,J., Hirano,H.Y., Suzuki,Y. and Sano,Y.
Theor. Appl. Genet. 2008 116(7) 979-989

Allelic diversification at the wx locus in landraces of Asian rice

Konishi S,Ebana K,Izawa T
Plant Cell Physiol. 2008 49 1283-93

Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars.

Isshiki M., Matsuda Y., Takasaki A., Hann Ling Wong, Satoh H., Shimamoto K.
Plant Biotechnology 2008 25(5) 483-487

du3, a mRNA cap-binding protein gene, regulates amylose content in Japonica rice seeds

Zhu,Q., Zheng,X., Luo,J., Gaut,B.S. and Ge,S.
Mol. Biol. Evol. 2007 24(3) 875-888

Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice

Fujita N,Yoshida M,Kondo T,Saito K,Utsumi Y,Tokunaga T,Nishi A,Satoh H,Park JH,Jane JL,Miyao A,Hirochika H,Nakamura Y
Plant Physiol. 2007 144 2009-23

Characterization of SSIIIa-deficient mutants of rice: the function of SSIIIa and pleiotropic effects by SSIIIa deficiency in the rice endosperm.

Zeng D, Yan M, Wang Y, Liu X, Qian Q, Li J.
Plant Mol. Biol. 2007 65(4) 501-9

Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.).

Perata, Pierdomenico
Plant Physiol. 2007 144(1) 218-231

Transcript Profiling of the Anoxic Rice Coleoptile.

Yamaguchi, Takeshi
Plant Physiol. 2007 144(1) 258-277

Comprehensive Expression Profiling of Rice Grain Filling-Related Genes under High Temperature Using DNA Microarray.

Zhang,L.B. and Ge,S.
Mol. Biol. Evol. 2007 24(3) 769-783

Multilocus analysis of nucleotide variation and speciation in Oryza officinalis and its close relatives

Wang LQ,Liu WJ,Xu Y,He YQ,Luo LJ,Xing YZ,Xu CG,Zhang Q
Theor. Appl. Genet. 2007 115 463-76

Genetic basis of 17 traits and viscosity parameters characterizing the eating and cooking quality of rice grain.

Hori Y,Fujimoto R,Sato Y,Nishio T
Theor. Appl. Genet. 2007 115 217-24

A novel wx mutation caused by insertion of a retrotransposon-like sequence in a glutinous cultivar of rice (Oryza sativa).

Bao JS, Corke H, Sun M.
Theor. Appl. Genet. 2006 113(7) 1171-83

Nucleotide diversity in starch synthase IIa and validation of single nucleotide polymorphisms in relation to starch gelatinization temperature and other physicochemical properties in rice (Oryza sativa L.).

Bao JS, Corke H, Sun M.
Theor. Appl. Genet. 2006 113(7) 1185-96

Microsatellites, single nucleotide polymorphisms and a sequence tagged site in starch-synthesizing genes in relation to starch physicochemical properties in nonwaxy rice (Oryza sativa L.).

Olsen,K.M., Caicedo,A.L., Polato,N., McClung,A., McCouch,S.R. and Purugganan,M.D.
Genetics 2006 173(2) 975-983

Selection under Domestication: Evidence for a Sweep in the Rice Waxy Genomic Region

Hirose T, Terao T.
Planta. 2004 220(1) 9-16

A comprehensive expression analysis of the starch synthase gene family in rice (Oryza sativa L.).

Zhu,Y., Cai,X.L., Wang,Z.Y. and Hong,M.M.
J. Biol. Chem. 2003 278(48) 47803-47811

An interaction between a MYC protein and an EREBP protein is involved in transcriptional regulation of the rice Wx gene.

Sato, Y. and T. Nishio
Theor. Appl. Genet. 2003 107 560-567

Mutation detection in rice waxy mutants by PCR-RF-SSCP.

Itoh, K., H. Ozaki, K. Okada, H. Hori, Y. Takeda and T. Mitsui
Plant Cell Physiol. 2003 44 473-480

Introduction of Wx transgene into rice wx mutants leads to both high- and low-amylose rice.

Larkin,P.D. and Park,W.D.
Molecular Breeding 2003 12 335-339

Association of waxy gene single nucleotide polymorphisms with starch characteristics in rice (Oryza sativa L.)

Olsen,K.M. and Purugganan,M.D.
Genetics 2002 162(2) 941-950

Molecular Evidence on the Origin and Evolution of Glutinous Rice.

Suzuki Y., SANO Y., Hiro-Yuki Hirano
Euphytica 2002 123 95-100

Isolation and characterization of a rice mutant insensitive to cool temperatures on amylose synthesis

Sato,H., Suzuki,Y., Sakai,M. and Imbe,T.
Breeding Science 2002 52(2) 131-135

Molecular Characterization of Wx-mq, a Novel Mutant Gene for Low-amylose Content in Endosperm of Rice (Oryza sativa L.)

Isshiki M, Yamamoto Y, Satoh H, Shimamoto K.
Plant Physiol. 2001 125(3) 1388-1395

Nonsense-mediated decay of mutant waxy mRNA in rice.

Isshiki, M., M. Nakajima, H. Satoh and K. Shimamoto
Plant J. 2000 23 (4) 451-460

dull: rice mutants with tissue-specific effects on the splicing of the waxy pre-mRNA.

Terada, R., M. Nakajima, M. Isshiki, R.J. Okagaki, S.R. Wessler and K. Shimamoto
Plant Cell Physiol. 2000 41 881-888.

Antisense Waxy gene with highly active promoters effectively suppress Waxy gene expression in transgenic rice.

Tan, Y.F., J.X. Li, S.B. Yu, Y.Z, Xing, C.G. Xu and Q. Zhang
Theor. Appl. Genet. 1999 99 642-648

The three important traits for cooking and eating quality of rice grains are controlled by a single locus in an elite rice hybrid, Shanyou 63.

He, P., S.G. Li, Q. Qian, Y.Q. Ma, J.Z. Li, W.M. Wang, Y. Chen and L.H. Zhu
Theor. Appl. Genet. 1999 98 502-508

Genetic analysis of rice grain quality.

SATO T., L.-H. WU, NAGANO H., KISHIMA Y., SANO Y.
RGN 1999 16

Rice EPSP synthase gene resides 45-kb downstream of the Waxy gene

Larkin,P.D. and Park,W.D.
Plant Mol. Biol. 1999 40(4) 719-727

Transcript accumulation and utilization of alternate and non-consensus splice sites in rice granule-bound starch synthase are temperature-sensitive and controlled by a single-nucleotide polymorphism.

Hirano,H.Y., Eiguchi,M. and Sano,Y.
Mol. Biol. Evol. 1998 15(8) 978-987

A single base change altered the regulation of the Waxy gene at the posttranscriptional level during the domestication of rice.

Nagano. H., S. Kawasaki, Y. Kishima and Y. Sano
Breeding Science 1998 48(Suppl. 2) 47

Conservation of the rice wx locus among plant genomes and comparison with the transcriptional map.

Hirano, H. and Y. Sano
Plant Cell Physiol. 1998 39 807-812.

Enhancement of Wx gene expression and the accumulation of amylose in response to cool temperatures during seed development in rice.

Inukai, T., A. Sako, Y. Kishima and Y. Sano
Breeding Science 1998 48(Suppl. 1) 15

Intragenic recombination at the wx locus in rice.

Isshiki, M., K. Morino, M. Nakajima, R.J. Okagaki, S.R. Wessler, T. Izawa and K. Shimamoto
Plant J. 1998 15(1) 133-138

A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5' splice site of the first intron.

Frances,H., Bligh,J., Larkin,P.D., Roach,P.S., Jones,C.A., Fu,H. and Park,W.D.
Plant Mol. Biol. 1998 38(3) 407-415

Use of alternate splice sites in granule-bound starch synthase mRNA from low-amylose rice varieties.

Sako, A., H. Nagano, T. Inukai and Y. Sano
Breeding Science 1998 48(Suppl. 2) 330

Molecular characterization of mutations induced by gamma rays and EMS treatments at the rice wx locus.

Cai, X.L., Z.Y. Wang, Y.Y. Xing, J.L. Zhang and M.M. Hong
Plant J. 1998 14(4) 459-465

Aberrant splicing of intron 1 leads to the heterogeneous 5'UTR and decreased expression of waxy gene in rice cultivars of intermediate amylose content.

Kishima, Y. and Y. Sano
Recent Advances in Breeding 1998 40 69-72.

Structural characterization based on the physical map of the rice BAC clones and its applications.

Nagano, H., L. Wu, S. Kawasaki, Y. Kishima and Y. Sano
RGN 1997 14 121-123.

Construction of a 300-kb BAC contig containing waxy locus in Japonica rice.

Ayres, N.M., A.M. McClung, P.D. Larkin, H.F.J. Bligh, C.A. Jones and W.D. Park
Theor. Appl. Genet. 1997 94 773-781.

Microsatellites and a single-nucleotide polymorphism differentiate apparent amylose classes in an extended pedigree of US rice germ plasm.

Itoh, K., M. Nakajima and K. Shimamoto
Mol. Gen. Genet. 1997 255 351-358.

Silencing of waxy genes in rice containing Wx transgenes.

Itoh, K. and K. Shimamoto
Breeding Science 1997 47(Suppl. 1) 113

Gene silencing at the waxy gene of rice.

Mikami, I., H. Nagano, H. Hirano and Y. Sano
Breeding Science 1997 47(Suppl. 1) 308

Tissue specific expression of opaque endosperm (WxOP) mutants in rice.

Hirano, H-Y., M. Eiguchi and Y. Sano
RGN 1996 13 148-149.

A point mutation, G to T, causes the differentiation of the Wxb allele from Wxa allele, which is specific to Japonica rice.

Mikami, I., H. Nagano, M. Eiguchi, H.-Y. Hirano and Y. Sano
RGN 1996 13 134-136.

Genetic characterization of opaque endosperms.

Hirano, H.-Y., M. Eiguchi, M, Matsumoto and Y. Sano
Breeding Science 1996 46(Suppl. 1) 50

Analysis of expression of the rice Wx gene by transient assay system -- Identification of the sequence element responsible for the difference in the expression level of Wxa and Wxb.

Ma,H., Zhu,X.P., Lou,X.M., Chen,L. and Zhang,J.
Yi Chuan Xue Bao 1995 22 353-360

Construction and transient expression of a chimeric gene consisting of 5' upstream region of Wx gene and coding region of GUS gene in Rice developing seeds

Bligh, H.F.J., R.I. Till and C.A. Jones
Euphytica 1995 86 83-85.

A microsatellite sequence closely linked to the Waxy gene of Oryza sativa.

Z Y Wang, F Q Zheng, G Z Shen, J P Gao, D P Snustad, M G Li, J L Zhang, M M Hong
Plant J. 1995 7(4) 613-22

The amylose content in rice endosperm is related to the post-transcriptional regulation of the waxy gene.

Morino, K., M. Issiki, M. Nakajima, T. Izawa and K. Shimamoto
Breeding Science 1995 45(Suppl. 2) 40

Regulation of waxy gene expression in rice l.Is Wxb gene a splicing mutant ?

Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994 138 1251-1274.

Saturated molecular map of the rice genome based on an interspecific backcross population.

Li, T., T. Takano, Y. Nagamura and G. Takeda
Breeding Science 1994 44(Suppl. 1) 19

Characterization and RFLP mapping of rice lactate dehydrogenase gene.

Li, T., T. Takano, Y. Nagamura and G. Takeda
RGN 1994 11 109-111.

Linkage analysis of rice lactate dehydrogenase gene.

Wang,Z.Y., Zheng,F.Q., Gao,J.P., Wang,X.Q., Wu,M., Zhang,J.L. and Hong,M.M.
Sci. China, Ser. B, Chem. Life Sci. Earth Sci. 1994 37 437-447

Identification of two transposon-like elements in rice Wx gene

Ideta, O., A. Yoshimura, T. Matsumoto, H. Tsunematsu, H. Saito and N. Iwata
RGN 1993 10 87-89.

Integration of conventional and RFLP linkage maps in rice.II. Choromosomes 6, 9, 10 and 11.

Tanksley, S.D., T.M. Fulton and S.R. McCouch
Genetic Maps, Locus Maps of Complex Genomes, Plants. S.J. O'Brien ed. Cold Spring Harbour Lab. Press. 1993 Book 6 61-79.

Linkage map of rice (Oryza sativa) (2N=24).

Okagaki,R.J.
Plant Mol. Biol. 1992 19(3) 513-516

Nucleotide sequence of a long cDNA from the rice waxy gene.

Sano, Y., H.Y. Hirano and M. Nishimura
Rice Genetics. II. IRRI, Manila, Philippines. 1991 11-20.

Evolutionary significance of differential regulation at the wx locus of rice.

Hirano,H.Y. and Sano,Y.
Plant Cell Physiol. 1991 32(7) 989-997

Molecular characterisation of the waxy locus of rice

Wang,Z.Y., Wu,Z.L., Xing,Y.Y., Zheng,F.G., Guo,X.L., Zhang,W.G. and Hong,M.M.
Nucleic Acids Res. 1990 18(19) 5898

Nucleotide sequence of rice waxy gene.

Heu, M.H. and Y.K. Kim
S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO. 1989 I 321-324.

Inheritance of an opaque endosperm derived from Nepal Indica rice cultivar POKHARELI MASHINO.

Satoh, H. and T. Omura
Rice Genetics. IRRI, Manila, Philippines. 1986 707-717.

Mutagenesis in rice by treating fertilized egg cells with nitroso compounds.

Kinoshita, T.
In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo. 1984 187-274.

Gene analysis and linkage map.

Sano, Y.
Theor. Appl. Genet. 1984 68 467-473.

Differential regulation of waxy gene expression in rice endosperm.

Nagao, S. and M. Takahashi
J. Fac. Agr. Hokkaido Univ. 1963 53(1) 72-130.

Trial construction of twelve linkage groups in Japanese rice. (Genetical studies on rice plant, XXVII).

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DB Reference

Gramene ID

GR:0061010

オントロジー

Gene Ontology

response to heat( GO:0009408 )
inflorescence development( GO:0010229 )
chloroplast( GO:0009507 )
starch metabolic process( GO:0005982 )
starch synthase activity( GO:0009011 )
amyloplast( GO:0009501 )
glycogen (starch) synthase activity( GO:0004373 )
amyloplast starch grain( GO:0009568 )
starch biosynthetic process( GO:0019252 )
NDP-glucose-starch glucosyltransferase activity( GO:0033840 )
seed germination( GO:0009845 )
plastid( GO:0009536 )
response to water( GO:0009415 )
response to salt stress( GO:0009651 )
seed development( GO:0048316 )
response to flooding( GO:0009413 )

Trait Ontology

glutinous endosperm( TO:0000098 )
amylose content( TO:0000196 )
seed quality( TO:0000162 )
water stress trait( TO:0000237 )
salt tolerance( TO:0006001 )
seed development trait( TO:0000653 )
submergence sensitivity( TO:0000286 )
inflorescence development trait( TO:0000621 )
heat tolerance( TO:0000259 )
nitrogen sensitivity( TO:0000011 )

Plant Ontology

seed( PO:0009010 )
0 seed germination stage( PO:0007057 )
endosperm( PO:0009089 )
seed development stage( PO:0001170 )
seed imbibition stage( PO:0007022 )
inflorescence development stage( PO:0001083 )
seed maturation stage( PO:0007632 )

Rice Database Oryzabase

遺伝子 - 詳細

詳細 - 遺伝子