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Basic Information
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CGSNL Gene Symbol
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YUCCA6
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Gene Symbol Synonym
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OsYUCCA6, OsYUC6, YUC6
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CGSNL Gene Name
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YUCCA-LIKE GENE 6
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Gene Name Synonym
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(YUCCA-like gene)
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Protein Name
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Allele
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Osyuc6
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Chromosome No.
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7
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Explanation
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an orthologue of AtYUCCA. TO:0020106: Indole-3-acetic acid content.
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Trait Class
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Biochemical character
Seed - Morphological traits - Embryo
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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LOC_Os07g25540.1
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RAP ID
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Os07g0437000
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Song W., Cai H., Guo Y., Chen S., Yao Y., Wang J., Guo T., Zhang J., Chen C.
Rice (N Y) 2025 18(1) 42
OsSDG715, a histone H3K9 methyltransferase, Integrates Auxin and Cytokinin Signaling to Regulate Callus Formation in Rice.
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Cai Z., Dai Y., Jin X., Xu H., Huang Z., Xie Z., Yu X., Luo J.
Front Plant Sci 2024 15 1348295
Ambient temperature regulates root circumnutation in rice through the ethylene pathway: transcriptome analysis reveals key genes involved.
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Han Y., Zhang C., Sha H., Wang X., Yu Y., Liu J., Zhao G., Wang J., Qiu G., Xu X., Fang J.
Rice (N Y) 2023 16(1) 9
Ubiquitin-conjugating enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.
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Khanday I., Santos-Medellín C., Sundaresan V.
New Phytol. 2023 238(2) 673-687
Somatic embryo initiation by rice BABY BOOM1 involves activation of zygote-expressed auxin biosynthesis genes.
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Dai D., Zhang H., He L., Chen J., Du C., Liang M., Zhang M., Wang H., Ma L.
Int J Mol Sci 2022 23(16)
<i>Panicle Apical Abortion 7</i> Regulates Panicle Development in Rice (<i>Oryza sativa</i> L.).
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Prakash S., Rai R., Zamzam M., Ahmad O., Peesapati R., Vijayraghavan U.
Front Plant Sci 2022 13 865928
OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.
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Wang J., Wan R., Nie H., Xue S., Fang Z.
The Crop Journal 2022 10 397-406
OsNPF5.16, a nitrate transporter gene with natural variation, is essential for rice growth and yield
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Zhang T., You J., Zhang Y., Yao W., Chen W., Duan Q., Xiao W., Ye L., Zhou Y., Sang X., Ling Y., He G., Li Y.
New Phytol. 2021
lf1 regulates the lateral organs polarity development in rice.
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Li H., Sun H., Jiang J., Sun X., Tan L., Sun C.
Plant Biotechnol. J. 2020
TAC4 controls tiller angle by regulating the endogenous auxin content and distribution in rice.
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Mao C., He J., Liu L., Deng Q., Yao X., Liu C., Qiao Y., Li P., Ming F.
Plant Biotechnol. J. 2020 18(2) 429-442
OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.
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Malik N., Ranjan R., Parida S.K., Agarwal P., Tyagi A.K.
Plant J. 2020 101(6) 1411-1429
Mediator subunit OsMED14_1 plays an important role in rice development.
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Hu Y., Li S., Fan X., Song S., Zhou X., Weng X., Xiao J., Li X., Xiong L., You A., Xing Y.
Plant Physiol. 2020 184(3) 1424-1437
<i>OsHOX1</i> and <i>OsHOX28</i> Redundantly Shape Rice tiller angle by Reducing <i>HSFA2D</i> Expression and Auxin Content.
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Guo T., Wang D., Fang J., Zhao J., Yuan S., Xiao L., Li X.
Int J Mol Sci 2019 20(10)
Mutations in the Rice <i>OsCHR4</i> Gene, Encoding a CHD3 Family Chromatin Remodeler, Induce Narrow and Rolled Leaves with Increased Cuticular Wax.
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Zhang H., Tan X., Li L., He Y., Hong G., Li J., Lin L., Cheng Y., Yan F., Chen J., Sun Z.
Mol. Plant Pathol. 2019 20(8) 1093-1104
Suppression of auxin signalling promotes rice susceptibility to Rice black streaked dwarf virus infection.
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Xu Y.X., Xiao M.Z., Liu Y., Fu J.L., He Y., Jiang D.A.
Plant Mol. Biol. 2017
The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.
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Xu Y., Zong W., Hou X., Yao J., Liu H., Li X., Zhao Y., Xiong L.
Plant J. 2015 83(5) 806-17
OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
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Abu-Zaitoon YM.
Appl. Biochem. Biotechnol. 2014 172(5) 2480-95
Phylogenetic analysis of putative genes involved in the tryptophan-dependent pathway of auxin biosynthesis in rice.
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Fujino,K., Matsuda,Y., Ozawa,K., Nishimura,T., Koshiba,T., Fraaije,M.W. and Sekiguchi,H.
Mol. Genet. Genomics 2008 279(5) 499-507
NARROW LEAF 7 controls leaf shape mediated by auxin in rice
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Hirano K., Aya K., Hobo T., Sakakibara H., Kojima M., Rosalyn Angeles Shim, Hasegawa Y., Miyako Ueguchi-Tanaka, Matsuoka M.
Plant & cell physiology 2008 49(10) 1429-50
Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice.
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Yamamoto Y, Kamiya N, Morinaka Y, Matsuoka M, Sazuka T.
Plant Physiol. 2007 143(3) 1362-1371
Auxin Biosynthesis by the YUCCA Genes in Rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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somatic embryogenesis( GO:0010262 )
response to temperature stimulus( GO:0009266 )
flavin-containing monooxygenase activity( GO:0004499 )
auxin biosynthetic process( GO:0009851 )
response to gravity( GO:0009629 )
defense response to virus( GO:0051607 )
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Trait Ontology
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gravity response trait( TO:0002693 )
black streak dwarf virus resistance( TO:0000020 )
auxin content( TO:0002672 )
temperature response trait( TO:0000432 )
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Plant Ontology
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shoot apical meristem( PO:0020148 )
primordium( PO:0025127 )
procambium( PO:0025275 )
vascular bundle( PO:0005020 )
plant zygote( PO:0000423 )
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Related Strains
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Phenotype images
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Last updated
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Sep 29, 2025
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Update info.