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Detail of Gene

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Basic Information
CGSNL Gene Symbol YUCCA4
Gene Symbol Synonym OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6
Gene Name Synonym (YUCCA-like gene)
Protein Name
Chromosome No. 1
Explanation an orthologue of AtYUCCA. YUCCA6 in Qin et al. 2020. TO:1000022: anther morphology trait.
Trait Class Biochemical character
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
cDNA Accession No. AK070386
MSU ID LOC_Os01g12490.1
RAP ID Os01g0224700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Han Y., Zhang C., Sha H., Wang X., Yu Y., Liu J., Zhao G., Wang J., Qiu G., Xu X., Fang J.
Rice (N Y) 2023  16(1)  9
Ubiquitin-conjugating enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.
Zhao Z., Wang C., Yu X., Tian Y., Wang W., Zhang Y., Bai W., Yang N., Zhang T., Zheng H., Wang Q., Lu J., Lei D., He X., Chen K., Gao J., Liu X., Liu S., Jiang L., Wang H., Wan J.
Proc. Natl. Acad. Sci. U.S.A. 2022  119(36)  e2121671119
Auxin regulates source-sink carbohydrate partitioning and reproductive organ development in rice.
Li J., Zhao T., Chen L., Chen H., Luo D., Chen C., Miao Y., Liu D.
BMC Plant Biol. 2022  22(1)  368
Artemisia argyi allelopathy: a generalist compromises hormone balance, element absorption, and photosynthesis of receptor plants.
Qin Q., Li G., Jin L., Huang Y., Wang Y., Wei C., Xu Z., Yang Z., Wang H., Li Y.
PLoS Pathog. 2020  16(12)  e1009118
Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus.
Chen R., Xu N., Yu B., Wu Q., Li X., Wang G., Huang J.
Plant Sci. 2020  298  110575
The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice.
Malik N., Ranjan R., Parida S.K., Agarwal P., Tyagi A.K.
Plant J. 2020  101(6)  1411-1429
Mediator subunit OsMED14_1 plays an important role in rice development.
Lee H.Y., Chen Z., Zhang C., Yoon G.M.
J. Exp. Bot. 2019  70(6)  1927-1940
Editing of the OsACS locus alters phosphate deficiency-induced adaptive responses in rice seedlings.
Xu N., Chu Y., Chen H., Li X., Wu Q., Jin L., Wang G., Huang J.
PLoS Genet. 2018  14(10)  e1007662
Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.
Song S., Chen Y., Liu L., See Y.H.B., Mao C., Gan Y., Yu H.
Nat Plants 2018  4(7)  495-504
OsFTIP7 determines auxin-mediated anther dehiscence in rice.
Xu Y.X., Xiao M.Z., Liu Y., Fu J.L., He Y., Jiang D.A.
Plant Mol. Biol. 2017   
The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.
Wang T., Li C., Wu Z., Jia Y., Wang H., Sun S., Mao C., Wang X.
Front Plant Sci 2017  8  1121
Abscisic Acid Regulates Auxin Homeostasis in Rice Root Tips to Promote root hair Elongation.
Xu Y., Zong W., Hou X., Yao J., Liu H., Li X., Zhao Y., Xiong L.
Plant J. 2015  83(5)  806-17
OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
Abu-Zaitoon YM.
Appl. Biochem. Biotechnol. 2014  172(5)  2480-95
Phylogenetic analysis of putative genes involved in the tryptophan-dependent pathway of auxin biosynthesis in rice.
Fujino,K., Matsuda,Y., Ozawa,K., Nishimura,T., Koshiba,T., Fraaije,M.W. and Sekiguchi,H.
Mol. Genet. Genomics 2008  279(5)  499-507
NARROW LEAF 7 controls leaf shape mediated by auxin in rice
Hirano K., Aya K., Hobo T., Sakakibara H., Kojima M., Rosalyn Angeles Shim, Hasegawa Y., Miyako Ueguchi-Tanaka, Matsuoka M.
Plant & cell physiology 2008  49(10)  1429-50
Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice.
Yamamoto Y, Kamiya N, Morinaka Y, Matsuoka M, Sazuka T.
Plant Physiol. 2007  143(3)  1362-1371
Auxin Biosynthesis by the YUCCA Genes in Rice.
TextPresso Search Search textpresso for YUCCA4 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to other organism( GO:0051707 )
defense response to virus( GO:0051607 )
flavin-containing monooxygenase activity( GO:0004499 )
auxin biosynthetic process( GO:0009851 )
response to abscisic acid stimulus( GO:0009737 )
anther development( GO:0048653 )
anther dehiscence( GO:0009901 )
response to starvation( GO:0042594 )
Trait Ontology abscisic acid sensitivity( TO:0000615 )
viral disease resistance( TO:0000148 )
spikelet anatomy and morphology trait( TO:0000657 )
auxin content( TO:0002672 )
Plant Ontology anther development stage( PO:0001004 )
anther( PO:0009066 )
G anther dehiscence stage( PO:0001035 )
Related Strains
Phenotype images
Last updated
Jun 19, 2023