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Basic Information
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CGSNL Gene Symbol
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YUCCA4
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Gene Symbol Synonym
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OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6
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CGSNL Gene Name
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YUCCA-LIKE GENE 4
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Gene Name Synonym
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(YUCCA-like gene)
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Protein Name
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Allele
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yuc4
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Chromosome No.
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1
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Explanation
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an orthologue of AtYUCCA. YUCCA6 in Qin et al. 2020. TO:1000022: anther morphology trait.
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Trait Class
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Biochemical character
Seed - Morphological traits - Embryo
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK070386
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MSU ID
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LOC_Os01g12490.1
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RAP ID
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Os01g0224700
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Wang Z., Xu M., Liu Y., Zheng X., Hong Z., He M., Jin X., Tang J., Li X., Tian X., Qian Q., Bu Q.
Nat Commun 2025 16(1) 6893
OsBZR4 regulates temperature-dependent embryogenesis in rice.
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Dong N.Q., Lin H.X.
J Integr Plant Biol 2025 67(11) 2784-2786
Temperature-dependent embryoless seeds improve milled rice yield and storability.
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Sang L., Xu E., Liu Y., Hu T., Yang M., Niu J., Lu C., Zhou Y., Sun Y., Zhai Z., Abdulmajid D., Zhang P., Wang Q., La H., Zou Y.
BMC Plant Biol. 2025 25(1) 264
Transcriptomic analysis offers deep insights into the Increased Grain Length 1 (IGL1) regulation of grain length.
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Han Y., Zhang C., Sha H., Wang X., Yu Y., Liu J., Zhao G., Wang J., Qiu G., Xu X., Fang J.
Rice (N Y) 2023 16(1) 9
Ubiquitin-conjugating enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.
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Li J., Zhao T., Chen L., Chen H., Luo D., Chen C., Miao Y., Liu D.
BMC Plant Biol. 2022 22(1) 368
Artemisia argyi allelopathy: a generalist compromises hormone balance, element absorption, and photosynthesis of receptor plants.
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Zhao Z., Wang C., Yu X., Tian Y., Wang W., Zhang Y., Bai W., Yang N., Zhang T., Zheng H., Wang Q., Lu J., Lei D., He X., Chen K., Gao J., Liu X., Liu S., Jiang L., Wang H., Wan J.
Proc. Natl. Acad. Sci. U.S.A. 2022 119(36) e2121671119
Auxin regulates source-sink carbohydrate partitioning and reproductive organ development in rice.
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Chen R., Xu N., Yu B., Wu Q., Li X., Wang G., Huang J.
Plant Sci. 2020 298 110575
The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice.
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Qin Q., Li G., Jin L., Huang Y., Wang Y., Wei C., Xu Z., Yang Z., Wang H., Li Y.
PLoS Pathog. 2020 16(12) e1009118
Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus.
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Malik N., Ranjan R., Parida S.K., Agarwal P., Tyagi A.K.
Plant J. 2020 101(6) 1411-1429
Mediator subunit OsMED14_1 plays an important role in rice development.
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Lee H.Y., Chen Z., Zhang C., Yoon G.M.
J. Exp. Bot. 2019 70(6) 1927-1940
Editing of the OsACS locus alters phosphate deficiency-induced adaptive responses in rice seedlings.
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Xu N., Chu Y., Chen H., Li X., Wu Q., Jin L., Wang G., Huang J.
PLoS Genet. 2018 14(10) e1007662
Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.
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Song S., Chen Y., Liu L., See Y.H.B., Mao C., Gan Y., Yu H.
Nat Plants 2018 4(7) 495-504
OsFTIP7 determines auxin-mediated anther dehiscence in rice.
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Wang T., Li C., Wu Z., Jia Y., Wang H., Sun S., Mao C., Wang X.
Front Plant Sci 2017 8 1121
Abscisic Acid Regulates Auxin Homeostasis in Rice Root Tips to Promote root hair Elongation.
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Xu Y.X., Xiao M.Z., Liu Y., Fu J.L., He Y., Jiang D.A.
Plant Mol. Biol. 2017
The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.
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Xu Y., Zong W., Hou X., Yao J., Liu H., Li X., Zhao Y., Xiong L.
Plant J. 2015 83(5) 806-17
OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
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Abu-Zaitoon YM.
Appl. Biochem. Biotechnol. 2014 172(5) 2480-95
Phylogenetic analysis of putative genes involved in the tryptophan-dependent pathway of auxin biosynthesis in rice.
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Fujino,K., Matsuda,Y., Ozawa,K., Nishimura,T., Koshiba,T., Fraaije,M.W. and Sekiguchi,H.
Mol. Genet. Genomics 2008 279(5) 499-507
NARROW LEAF 7 controls leaf shape mediated by auxin in rice
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Hirano K., Aya K., Hobo T., Sakakibara H., Kojima M., Rosalyn Angeles Shim, Hasegawa Y., Miyako Ueguchi-Tanaka, Matsuoka M.
Plant & cell physiology 2008 49(10) 1429-50
Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice.
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Yamamoto Y, Kamiya N, Morinaka Y, Matsuoka M, Sazuka T.
Plant Physiol. 2007 143(3) 1362-1371
Auxin Biosynthesis by the YUCCA Genes in Rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to heat( GO:0009408 )
embryonic development ending in seed dormancy( GO:0009793 )
response to other organism( GO:0051707 )
defense response to virus( GO:0051607 )
flavin-containing monooxygenase activity( GO:0004499 )
auxin biosynthetic process( GO:0009851 )
response to abscisic acid stimulus( GO:0009737 )
anther development( GO:0048653 )
anther dehiscence( GO:0009901 )
response to starvation( GO:0042594 )
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Trait Ontology
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abscisic acid sensitivity( TO:0000615 )
viral disease resistance( TO:0000148 )
spikelet anatomy and morphology trait( TO:0000657 )
auxin content( TO:0002672 )
embryoless( TO:0000189 )
heat tolerance( TO:0000259 )
embryo development trait( TO:0000620 )
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Plant Ontology
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anther development stage( PO:0001004 )
anther( PO:0009066 )
G anther dehiscence stage( PO:0001035 )
plant embryo stage( PO:0007631 )
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Related Strains
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Phenotype images
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Last updated
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Jan 5, 2026
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Update info.