Gene - Detail

Detail of Gene

Click here for feedback

Basic Information
CGSNL Gene Symbol YUCCA1
Gene Symbol Synonym OsYUCCA1, OsYUC1, YUC1
CGSNL Gene Name YUCCA-LIKE GENE 1
Gene Name Synonym (YUCCA-like gene)
Protein Name
Allele KO-OsYUCCA1-1, KO-OsYUCCA1-2, yucca1
Chromosome No. 1
Explanation an orthologue of AtYUCCA. TO:0001041: root yield. GO:1990110: callus formation. GO:2000280: regulation of root development.
Trait Class Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Character as QTL - Yield and productivity
Biochemical character
Expression
Sequence/Locus
cDNA Accession No. AK105488
MSU ID LOC_Os01g45760.1
LOC_Os01g45760.2
RAP ID Os01g0645400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Yuan H., Cheng M., Fan F., Zheng X., Wang R., Si F., Luo X., Li N., Li S.
Adv Sci (Weinh) 2024    e2407733
OsGRF6-OsYUCCA1/OsWRKY82 Signaling Cascade Upgrade Grain Yield and Bacterial Blight Resistance in Rice.
Thenappan D.P., Pandey R., Hada A., Jaiswal D.K., Chinnusamy V., Bhattacharya R., Annapurna K.
Rice (N Y) 2024  17(1)  60
Physiological Basis of Plant Growth Promotion in Rice by Rhizosphere and Endosphere Associated Streptomyces Isolates from India.
Guo F., Wang H., Lian G., Cai G., Liu W., Zhang H., Li D., Zhou C., Han N., Zhu M., Su Y., Seo P.J., Xu L., Bian H.
Commun Biol 2023  6(1)  457
Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice.
Duan E., Lin Q., Wang Y., Ren Y., Xu H., Zhang Y., Wang Y., Teng X., Dong H., Wang Y., Jiang X., Chen X., Lei J., Yang H., Chen R., Jiang L., Wang H., Wan J.
Plant Cell 2023   
The transcriptional hub SHORT INTERNODES1 integrates hormone signals to orchestrate rice growth and development.
Wang S., Han S., Zhou X., Zhao C., Guo L., Zhang J., Liu F., Huo Q., Zhao W., Guo Z., Chen X.
Plant Cell 2023  35(6)  2391-2412
Phosphorylation and ubiquitination of OsWRKY31 are integral to OsMKK10-2-mediated defense responses in rice.
Kellogg E.A.
Plant Cell 2022  34(7)  2518-2533
Genetic control of branching patterns in grass inflorescences.
Da Costa MVJ., Ramegowda V., Sreeman S., Nataraja K.N.
Int J Mol Sci 2021  22(21) 
Targeted Phytohormone Profiling Identifies Potential Regulators of spikelet sterility in Rice under Combined Drought and Heat Stress.
Zhang T., You J., Zhang Y., Yao W., Chen W., Duan Q., Xiao W., Ye L., Zhou Y., Sang X., Ling Y., He G., Li Y.
New Phytol. 2021   
lf1 regulates the lateral organs polarity development in rice.
Tripathi D.K., Rai P., Guerriero G., Sharma S., Corpas F.J., Singh V.P.
J. Exp. Bot. 2020   
Silicon induces adventitious root formation in rice (Oryza sativa L.) under arsenate stress with the involvement of nitric oxide and indole-3-acetic acid.
Piacentini D., Della Rovere F., Sofo A., Fattorini L., Falasca G., Altamura M.M.
Front Plant Sci 2020  11  1182
Nitric Oxide Cooperates With Auxin to Mitigate the Alterations in the root system Caused by Cadmium and Arsenic.
Hu Y., Li S., Fan X., Song S., Zhou X., Weng X., Xiao J., Li X., Xiong L., You A., Xing Y.
Plant Physiol. 2020  184(3)  1424-1437
<i>OsHOX1</i> and <i>OsHOX28</i> Redundantly Shape Rice tiller angle by Reducing <i>HSFA2D</i> Expression and Auxin Content.
Chang S., Chen Y., Jia S., Li Y., Liu K., Lin Z., Wang H., Chu Z., Liu J., Xi C., Zhao H., Han S., Wang Y.
PLoS Genet. 2020  16(10)  e1009157
Auxin apical dominance governed by the OsAsp1-OsTIF1 complex determines distinctive rice caryopses development on different branches.
Yang C., Liu X., Li D., Zhu X., Wei Z., Feng Z., Zhang L., He J., Mou C., Jiang L., Wan J.
Plant Sci. 2019  288  110239
OsLUGL is involved in the regulating auxin level and OsARFs expression in rice (Oryza sativa L.).
Zhang H., Tan X., Li L., He Y., Hong G., Li J., Lin L., Cheng Y., Yan F., Chen J., Sun Z.
Mol. Plant Pathol. 2019  20(8)  1093-1104
Suppression of auxin signalling promotes rice susceptibility to Rice black streaked dwarf virus infection.
Guo T., Chen K., Dong N.Q., Ye W.W., Shan J.X., Lin H.X.
J Integr Plant Biol 2019   
Tillering and small grain 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.
Liu Q., Ting-Ting Chen, Dong-Wang Xiao, Shu-Man Zhao, Ji-Shan Lin, Wang T., Yan-Jie Li, Bing-Kai Hou
Rice (N Y) 2019  12(1)  92
OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.
Zeng Y., Wen J., Zhao W., Wang Q., Huang W.
Front Plant Sci 2019  10  1663
Rational Improvement of Rice Yield and cold tolerance by Editing the Three Genes <i>OsPIN5b</i>, <i>GS3</i>, and <i>OsMYB30</i> With the CRISPR-Cas9 System.
Phule A.S., Barbadikar K.M., Madhav M.S., Senguttuvel P., Babu MBBP., Ananda Kumar P.
3 Biotech 2018  8(9)  383
Genes encoding membrane proteins showed stable expression in rice under aerobic condition: novel set of reference genes for expression studies.
Tong X., Wang Y., Sun A., Bello B.K., Ni S., Zhang J.
Int J Mol Sci 2018  19(12) 
<b>Notched Belly Grain 4, a Novel Allele of Dwarf 11, Regulates grain shape and Seed Germination in Rice (Oryza sativa L.)</b>.
Xu Y.X., Xiao M.Z., Liu Y., Fu J.L., He Y., Jiang D.A.
Plant Mol. Biol. 2017   
The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.
Wang T., Li C., Wu Z., Jia Y., Wang H., Sun S., Mao C., Wang X.
Front Plant Sci 2017  8  1121
Abscisic Acid Regulates Auxin Homeostasis in Rice Root Tips to Promote root hair Elongation.
Xu Y., Zong W., Hou X., Yao J., Liu H., Li X., Zhao Y., Xiong L.
Plant J. 2015  83(5)  806-17
OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
Zhao F.Y.a, Han M.M.a, Zhang S.Y.b, Ren J.a, Hu F.a, Wang X.a
Russian Journal of Plant Physiology 2014  61  608-618
MAPKs as a cross point in H2O2 and auxin signaling under combined cadmium and zinc stress in rice roots
Abu-Zaitoon YM.
Appl. Biochem. Biotechnol. 2014  172(5)  2480-95
Phylogenetic analysis of putative genes involved in the tryptophan-dependent pathway of auxin biosynthesis in rice.
Yi J., Liu L., Cao Y., Li J., Mei M.
J. Genet. 2013  92(3)  471-80
Cloning, characterization and expression of OsFMO(t) in rice encoding a flavin monooxygenase.
Sazuka T,Kamiya N,Nishimura T,Ohmae K,Sato Y,Imamura K,Nagato Y,Koshiba T,Nagamura Y,Ashikari M,Kitano H,Matsuoka M
Plant J. 2009  60(2)  227-41
A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos.
Fujino,K., Matsuda,Y., Ozawa,K., Nishimura,T., Koshiba,T., Fraaije,M.W. and Sekiguchi,H.
Mol. Genet. Genomics 2008  279(5)  499-507
NARROW LEAF 7 controls leaf shape mediated by auxin in rice
Hirano K., Aya K., Hobo T., Sakakibara H., Kojima M., Rosalyn Angeles Shim, Hasegawa Y., Miyako Ueguchi-Tanaka, Matsuoka M.
Plant & cell physiology 2008  49(10)  1429-50
Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice.
Yamamoto Y, Kamiya N, Morinaka Y, Matsuoka M, Sazuka T.
Plant Physiol. 2007  143(3)  1362-1371
Auxin Biosynthesis by the YUCCA Genes in Rice.
DB Reference
Gramene ID -
Ontologies
Gene Ontology root development( GO:0048364 )
inflorescence development( GO:0010229 )
response to symbiotic bacterium( GO:0009609 )
response to heat( GO:0009408 )
response to water deprivation( GO:0009414 )
adventitious root development( GO:0048830 )
response to cadmium ion( GO:0046686 )
response to arsenic( GO:0046685 )
defense response to virus( GO:0051607 )
response to anoxia( GO:0034059 )
response to abscisic acid stimulus( GO:0009737 )
flavin-containing monooxygenase activity( GO:0004499 )
auxin biosynthetic process( GO:0009851 )
Trait Ontology black streak dwarf virus resistance( TO:0000020 )
abscisic acid sensitivity( TO:0000615 )
silicon sensitivity( TO:0000031 )
root number( TO:0000084 )
adventitious root number( TO:0001006 )
root fresh weight( TO:0000578 )
drought tolerance( TO:0000276 )
heat tolerance( TO:0000259 )
auxin content( TO:0002672 )
callus induction( TO:0000428 )
grain yield( TO:0000396 )
secondary branch number( TO:0000557 )
inflorescence development trait( TO:0000621 )
filled grain number( TO:0000447 )
grain yield per plant( TO:0000449 )
root development trait( TO:0000656 )
root length( TO:0000227 )
lateral root number( TO:0001013 )
Plant Ontology flag leaf( PO:0020103 )
inflorescence branch meristem( PO:0009105 )
Related Strains
-
Phenotype images
-
Last updated
Feb 20, 2025


/rice/oryzabase