Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SDT
Gene Symbol Synonym miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p
CGSNL Gene Name SEMIDWARF AND HIGH-TILLERING
Gene Name Synonym micro RNA 156h, microRNA156h, osa-miRNA156h, semidwarf and high-tillering
Protein Name
Allele sdt
Chromosome No. 6
Explanation Precursors of OsmiR156h and OsmiR156j are from the same transcription unit AK103769(Os06g0649600). miRBase accession: MI0000660. PO:0000009; cultured callus ; PO:0009049; inflorescence ; PO:0009005; root ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007192; callus promotion ; GRO:0007193; plantlet regeneration. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. LM383293, LM383292. OsmiR156h is the sequence responsible for the sdt QTL (Zhao et al. 2015).
Trait Class Vegetative organ - Culm
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Other
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID -
RAP ID -
Links -
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Zhao M., Liu B., Wu K., Ye Y., Huang S., Wang S., Wang Y., Han R., Liu Q., Fu X., Wu Y.
PLoS ONE 2015  10(5)  e0126154
Regulation of OsmiR156h through Alternative Polyadenylation Improves grain yield in Rice.
Zhang D., Liu M., Tang M., Dong B., Wu D., Zhang Z., Zhou B.
Plant Sci. 2015  237  24-32
Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.
Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011  23(12)  4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011  39  D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
Wang S,Zhu QH,Guo X,Gui Y,Bao J,Helliwell C,Fan L
FEBS Lett. 2007  581  4789-93
Molecular evolution and selection of a gene encoding two tandem microRNAs in rice.
Xie K, Wu C, Xiong L.
Plant Physiol. 2006  142(1)  280-293
Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice.
TextPresso Search Search textpresso for SDT ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0100709
Ontologies
Gene Ontology mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 )
micro-ribonucleoprotein complex( GO:0035068 )
gene silencing by miRNA( GO:0035195 )
defense response to fungus( GO:0050832 )
Trait Ontology grain yield( TO:0000396 )
plant height( TO:0000207 )
lodging incidence( TO:0000068 )
tiller number( TO:0000346 )
tillering ability( TO:0000329 )
inflorescence branching( TO:0000050 )
blast disease( TO:0000074 )
Plant Ontology cultured plant callus( PO:0000009 )
root( PO:0009005 )
vascular leaf( PO:0009025 )
inflorescence( PO:0009049 )
Related Strains
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Phenotype images
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Last updated
Oct 8, 2015


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