Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | SDT |
| Gene Symbol Synonym | miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p |
| CGSNL Gene Name | SEMIDWARF AND HIGH-TILLERING |
| Gene Name Synonym | micro RNA 156h, microRNA156h, osa-miRNA156h, semidwarf and high-tillering |
| Protein Name | |
| Allele | sdt |
| Chromosome No. | 6 |
| Explanation | Precursors of OsmiR156h and OsmiR156j are from the same transcription unit AK103769(Os06g0649600). miRBase accession: MI0000660. PO:0000009; cultured callus ; PO:0009049; inflorescence ; PO:0009005; root ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007192; callus promotion ; GRO:0007193; plantlet regeneration. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. LM383293, LM383292. OsmiR156h is the sequence responsible for the sdt QTL (Zhao et al. 2015). |
| Trait Class |
Vegetative organ - Culm
Tolerance and resistance - Disease resistance Tolerance and resistance - Stress tolerance Character as QTL - Yield and productivity Other |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. | - |
| MSU ID | - |
| RAP ID | - |
| Links | - |
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INSD Accession List (Test version) |
Link to INSD Accession List |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Liu C., Li N., Lu Z., Sun Q., Pang X., Xiang X., Deng C., Xiong Z., Shu K., Yang F., Hu Z.
Front Plant Sci 2022 13 839457 CG and CHG Methylation Contribute to the Transcriptional Control of OsPRR37-output Genes in Rice.
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Zhang D., Liu M., Tang M., Dong B., Wu D., Zhang Z., Zhou B.
Plant Sci. 2015 237 24-32 Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.
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Zhao M., Liu B., Wu K., Ye Y., Huang S., Wang S., Wang Y., Han R., Liu Q., Fu X., Wu Y.
PLoS ONE 2015 10(5) e0126154 Regulation of OsmiR156h through Alternative Polyadenylation Improves grain yield in Rice.
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Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011 39 D152-D157 miRBase: integrating microRNA annotation and deep-sequencing data
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Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011 23(12) 4185-207 Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
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Wang S,Zhu QH,Guo X,Gui Y,Bao J,Helliwell C,Fan L
FEBS Lett. 2007 581 4789-93 Molecular evolution and selection of a gene encoding two tandem microRNAs in rice.
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Xie K, Wu C, Xiong L.
Plant Physiol. 2006 142(1) 280-293 Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice.
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| DB Reference | |
| Gramene ID | GR:0100709 |
| Ontologies | |
| Gene Ontology |
mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 ) micro-ribonucleoprotein complex( GO:0035068 ) gene silencing by miRNA( GO:0035195 ) defense response to fungus( GO:0050832 ) circadian rhythm( GO:0007623 ) |
| Trait Ontology |
grain yield( TO:0000396 )
plant height( TO:0000207 ) lodging incidence( TO:0000068 ) tiller number( TO:0000346 ) tillering ability( TO:0000329 ) inflorescence branching( TO:0000050 ) blast disease( TO:0000074 ) |
| Plant Ontology |
cultured plant callus( PO:0000009 )
root( PO:0009005 ) vascular leaf( PO:0009025 ) inflorescence( PO:0009049 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Jun 22, 2022 | |
