Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol CIPK01
Gene Symbol Synonym OsCIPK01, CIPK1, OsCIPK1, OsSnRK3.3, SnRK3.3
Gene Name Synonym CBL-interacting protein kinase 1, Sucrose nonfermenting-1-related protein kinase 3.3
Allele cipk1, cr-cipk1
Chromosome No. 1
Explanation EC= Q9LGV5. AU056086, AU056087.
Trait Class Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Grain shape
Biochemical character
Character as QTL - Yield and productivity
Vegetative organ - Culm
cDNA Accession No. AK061640
MSU ID LOC_Os01g18800.1
RAP ID Os01g0292200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Zhang Y., Gan L., Zhang Y., Huang B., Wan B., Li J., Tong L., Zhou X., Wei Z., Li Y., Song Z., Zhang X., Cai D., He Y.
Plant J. 2023   
OsCBL5-CIPK1-pp23 module enhances rice grain size and weight through the gibberellin pathway.
Chen Z., Zhou L., Jiang P., Lu R., Halford N.G., Liu C.
BMC Genomics 2021  22(1)  300
Genome-wide identification of sucrose nonfermenting-1-related protein kinase (SnRK) genes in barley and RNA-seq analyses of their expression in response to abscisic acid treatment.
Ye N.H., Wang F.Z., Shi L., Chen M.X., Cao Y.Y., Zhu F.Y., Wu Y.Z., Xie L.J., Liu T.Y., Su Z.Z., Xiao S., Zhang H., Yang J., Gu H.Y., Hou X.X., Hu Q.J., Yi H.J., Zhu C.X., Zhang J., Liu Y.G.
Plant J. 2018  94(4)  612-625
Natural variation in the promoter of rice calcineurin B-like protein10 (OsCBL10) affects flooding tolerance during seed germination among rice subspecies.
Kanwar P., Sanyal S.K., Tokas I., Yadav A.K., Pandey A., Kapoor S., Pandey G.K.
Cell Calcium 2014  56(2)  81-95
Comprehensive structural, interaction and expression analysis of CBL and CIPK complement during abiotic stresses and development in rice.
Hashimoto K., Eckert C., Uta Anschütz, Scholz M., Held K., Waadt R., Reyer A., Hippler M., Becker D., Jörg Kudla
J. Biol. Chem. 2012  287(11)  7956-68
Phosphorylation of calcineurin B-like (CBL) calcium sensor proteins by their CBL-interacting protein kinases (CIPKs) is required for full activity of CBL-CIPK complexes toward their target proteins.
Xiang Y,Huang Y,Xiong L
Plant Physiol. 2007  144  1416-28
Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement.
Yamaguchi,T., Nakayama,K., Hayashi,T., Yazaki,J., Kishimoto,N., Kikuchi,S. and Koike,S.
Biosci. Biotechnol. Biochem. 2004  68(6)  1315-1323
cDNA Microarray Analysis of Rice Anther Genes under Chilling Stress at the Microsporogenesis Stage Revealed Two Genes with DNA Transposon Castaway in the 5'-Flanking Region.
Kolukisaoglu U., Weinl S., Blazevic D., Batistic O., Jörg Kudla
Plant Physiol. 2004  134(1)  43-58
Calcium sensors and their interacting protein kinases: genomics of the Arabidopsis and rice CBL-CIPK signaling networks.
TextPresso Search Search textpresso for CIPK01 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology positive regulation of cell growth( GO:0030307 )
gibberellic acid mediated signaling( GO:0009740 )
protein amino acid phosphorylation( GO:0006468 )
protein serine/threonine kinase activity( GO:0004674 )
ATP binding( GO:0005524 )
protein tyrosine kinase activity( GO:0004713 )
manganese ion binding( GO:0030145 )
signal transduction( GO:0007165 )
response to cold( GO:0009409 )
response to flooding( GO:0009413 )
Trait Ontology temperature response trait( TO:0000432 )
cold tolerance( TO:0000303 )
flooding related trait( TO:0000114 )
grain size( TO:0000397 )
grain weight( TO:0000590 )
seed size( TO:0000391 )
grain yield( TO:0000396 )
gibberellic acid content( TO:0002675 )
plant height( TO:0000207 )
1000-seed weight( TO:0000382 )
glume length( TO:0020033 )
glume width( TO:0020034 )
grain length( TO:0000734 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Sep 28, 2023