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Basic Information
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CGSNL Gene Symbol
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NYC1
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Gene Symbol Synonym
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nyc1, OsNYC1
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CGSNL Gene Name
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NON-YELLOW COLORING 1
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Gene Name Synonym
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Chlorophyl b degrading enzyme, Chlase, Non-Yellow Coloring 1, non-yellow coloring1, Probable chlorophyll(ide) b reductase NYC1, chloroplastic, Protein NON-YELLOW COLORING 1, short-chain dehydrogenase/reductase NYC1
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Protein Name
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SHORT-CHAIN DEHYDROGENASE/REDUCTASE NYC1
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Allele
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nyc1-1, nyc1-2
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Chromosome No.
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1
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Explanation
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AB255025. Q5N800. nyc1 mutant shows the stay-green phenotype. MEMBRANE-LOCALIZED SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR). GRO:0007047; 02-seedling.
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Trait Class
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Biochemical character
Vegetative organ - Leaf
Coloration - Chlorophyll
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK068523
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MSU ID
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LOC_Os01g12710.1
LOC_Os01g12710.2
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RAP ID
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Os01g0227100
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Sun L., Xu H., Song J., Yang X., Wang X., Liu H., Pang M., Hu Y., Yang Q., Ning X., Liang S., Zhang S., Luan W.
Rice (N Y) 2024 17(1) 15
OsNAC103, a NAC Transcription Factor, Positively Regulates leaf senescence and Plant Architecture in Rice.
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Rahman M.A., Ullah H.
Plants (Basel) 2023 12(12)
Receptor for Activated C Kinase1B (RACK1B) Delays Salinity-Induced Senescence in Rice Leaves by Regulating Chlorophyll Degradation.
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Gao Y., Xiang X., Zhang Y., Cao Y., Wang B., Zhang Y., Wang C., Jiang M., Duan W., Chen D., Zhan X., Cheng S., Liu Q., Cao L.
Int J Mol Sci 2022 23(2)
Disruption of <i>OsPHD1</i>, Encoding a UDP-glucose epimerase, Causes JA Accumulation and Enhanced Bacterial Blight Resistance in Rice.
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R A O Yuchun, J I A O Ran, W A N G Sheng, W U Xianmei, Y E Hanfei, P A N Chenyang, L I Sanfeng, Dedong X., Z H O U Weiyong, D A I Gaoxing, H U Juan, R E N Deyong, W A N G Yuexing
Rice (N Y) 2021 14(1) 34
SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice.
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Sakuraba Y., Kim D., Han S.H., Kim S.H., Piao W., Yanagisawa S., An G., Paek N.C.
Plant Cell 2020 32(3) 630-649
Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced leaf senescence in Rice.
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Lim C., Kang K., Shim Y., Sakuraba Y., An G., Paek N.C.
Front Plant Sci 2020 11 1096
Rice ETHYLENE RESPONSE FACTOR 101 Promotes leaf senescence Through Jasmonic Acid-Mediated Regulation of <i>OsNAP</i> and <i>OsMYC2</i>.
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Zhou D., Li T., Yang Y., Qu Z., Ouyang L., Jiang Z., Lin X., Zhu C., Peng L., Fu J., Peng X., Bian J., Tang W., Xu J., He H.
Front Plant Sci 2020 11 782
<i>OsPLS4</i> Is Involved in Cuticular Wax Biosynthesis and Affects leaf senescence in Rice.
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Piao W., Suk-Hwan Kim, Byoung-Doo Lee, An G., Sakuraba Y., Nam-Chon Paek
J. Exp. Bot. 2019 70(10) 2699-2715
Rice transcription factor OsMYB102 delays leaf senescence by down-regulating abscisic acid accumulation and signaling.
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Zhao Y., Qiang C., Wang X., Chen Y., Deng J., Jiang C., Sun X., Chen H., Li J., Piao W., Zhu X., Zhang Z., Zhang H., Li Z., Li J.
Sci Rep 2019 9(1) 2541
New alleles for chlorophyll content and stay-green traits revealed by a genome wide association study in rice (Oryza sativa).
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Mao C., Lu S., Lv B., Zhang B., Shen J., He J., Luo L., Xi D., Chen X., Ming F.
Plant Physiol. 2017 174(3) 1747-1763
A Rice NAC Transcription Factor Promotes leaf senescence via ABA Biosynthesis.
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Piao W., Han S.H., Sakuraba Y., Paek N.C.
Mol. Cells 2017 40(10) 773-786
Rice 7-Hydroxymethyl Chlorophyll a Reductase Is Involved in the Promotion of Chlorophyll Degradation and Modulates Cell Death Signaling.
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Liu J., Shen J., Xu Y., Li X., Xiao J., Xiong L.
J. Exp. Bot. 2016 67(19) 5785-5798
Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.
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Yang Y., Xu J., Huang L., Leng Y., Dai L., Rao Y., Chen L., Wang Y., Tu Z., Hu J., Ren D., Zhang G., Zhu L., Guo L., Qian Q., Zeng D.
J. Exp. Bot. 2015
PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.
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Sakuraba Y., Piao W., Lim J.H., Han S.H., Kim Y.S., An G., Paek N.C.
Plant Cell Physiol. 2015 56(12) 2325-39
Rice ONAC106 Inhibits leaf senescence and Increases Salt Tolerance and tiller angle.
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Lee S.H., Sakuraba Y., Lee T., Kim K.W., An G., Lee H.Y., Paek N.C.
J Integr Plant Biol 2014
Mutation of Oryza sativa CORONATINE INSENSITIVE 1b (OsCOI1b) delays leaf senescence.
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Liang C., Wang Y., Zhu Y., Tang J., Hu B., Liu L., Ou S., Wu H., Sun X., Chu J., Chu C.
Proc. Natl. Acad. Sci. U.S.A. 2014 111(27) 10013-8
OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice.
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Wu H.B., Wang B., Chen Y., Liu Y.G., Chen L.
Theor. Appl. Genet. 2013 126(7) 1897-907
Characterization and fine mapping of the rice premature senescence mutant ospse1.
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Sato Y,Morita R,Katsuma S,Nishimura M,Tanaka A,Kusaba M
Plant J. 2009 57 120-31
Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice.
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Morita R,Sato Y,Masuda Y,Nishimura M,Kusaba M
Plant J. 2009 59 940-952
Defect in non-yellow coloring 3, an alpha/beta hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice.
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Sato Y, Morita R, Nishimura M, Yamaguchi H, Kusaba M.
Proc. Natl. Acad. Sci. U.S.A. 2007 104 14169
Mendel's green cotyledon gene encodes a positive regulator of the chlorophyll-degrading pathway.
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Kusaba,M., Ito,H., Morita,R., Iida,S., Sato,Y., Fujimoto,M., Kawasaki,S., Tanaka,R., Hirochika,H., Nishimura,M. and Tanaka,A.
Plant Cell 2007 19(4) 1362-1375
Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence
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DB Reference
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Gramene ID
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GR:0101290
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Ontologies
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Gene Ontology
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plastid( GO:0009536 )
oxidoreductase activity( GO:0016491 )
plastid membrane( GO:0042170 )
binding( GO:0005488 )
chloroplast thylakoid membrane( GO:0009535 )
PSII associated light-harvesting complex II catabolic process( GO:0010304 )
leaf senescence( GO:0010150 )
integral to membrane( GO:0016021 )
chlorophyll(ide) b reductase activity( GO:0034256 )
oxidation reduction( GO:0055114 )
chlorophyll catabolic process( GO:0015996 )
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Trait Ontology
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enzyme activity( TO:0000599 )
chlorophyll content( TO:0000495 )
leaf senescence( TO:0000249 )
stay green trait( TO:0002712 )
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Plant Ontology
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vascular leaf( PO:0009025 )
lemma( PO:0009037 )
palea( PO:0009038 )
leaf sheath( PO:0020104 )
inflorescence axis( PO:0020122 )
4 leaf senescence stage( PO:0001054 )
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Related Strains
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Induced Mutation Lines(National Inst. of Genetics)
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3
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Phenotype images
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Last updated
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Jun 25, 2024
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Update info.