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Detail of Gene

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Basic Information
CGSNL Gene Symbol CAB1R
Gene Symbol Synonym cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R
Gene Name Synonym "Chlorophyll a-b binding protein 1, chloroplast precursor", "Chlorophyll a-b binding protein 1, chloroplast", LHCII type I CAB-1, LHCII type I CAB, chlorophyll a/b-binding protein 1, light-harvesting chlorophyll a/b binding protein 1, PSII Cab1
Chromosome No. 9
Explanation P12330. X13908. D00641. a clock-controlled gene. Lhcb1b in Yamatani et al. 2018. CAB2R in Fang et al. 2020.
Trait Class Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK060851
MSU ID LOC_Os09g17740.1
RAP ID Os09g0346500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Lin D., Zhang T., Chen Y., Fan M., Kong R., Chen L., Wang Y., Xu J., Dong Y.
Biology (Basel) 2022  11(12) 
Rice <i>TCD8</i> Encoding a multi-domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.
Xu T., Zhang J., Liu Y., Zhang Q., Li W., Zhang Y., Wu M., Chen T., Ding D., Wang W., Zhang Z.
Front Plant Sci 2022  13  986678
Exon skipping in <i>IspE</i> Gene is associated with abnormal chloroplast development in rice <i>albino leaf 4</i> mutant.
Xu J., Ji Z., Wang C., Xu F., Wang F., Zheng Y., Tang Y., Wei Z., Zhao T., Zhao K.
Front Plant Sci 2022  13  918673
<i>WATER-SOAKED SPOT1</i> Controls Chloroplast Development and leaf senescence <i>via</i> Regulating Reactive Oxygen Species Homeostasis in Rice.
Sun C., Zhang K., Zhou Y., Xiang L., He C., Zhong C., Li K., Wang Q., Yang C., Wang Q., Chen C., Chen D., Wang Y., Liu C., Yang B., Wu H., Chen X., Li W., Wang J., Xu P., Wang P., Fang J., Chu C., Deng X.
Plant Biotechnol. J. 2021  19(8)  1644-1657
Dual function of clock component OsLHY sets critical day length for photoperiodic flowering in rice.
Lian L., Lin Y., Wei Y., He W., Cai Q., Huang W., Zheng Y., Xu H., Wang F., Zhu Y., Luo X., Xie H., Zhang J.
BMC Plant Biol. 2021  21(1)  287
PEPC of sugarcane regulated glutathione S-transferase and altered carbon-nitrogen metabolism under different N source concentrations in Oryza sativa.
Wang Q., Zhu B., Chen C., Yuan Z., Guo J., Yang X., Wang S., Lv Y., Liu Q., Yang B., Sun C., Wang P., Deng X.
Rice (N Y) 2021  14(1)  50
A Single Nucleotide Substitution of GSAM Gene Causes Massive Accumulation of Glutamate 1-Semialdehyde and Yellow Leaf Phenotype in Rice.
Hu W., Figueroa-Balderas R., Chi-Ham C., Lagarias J.C.
Plant Direct 2020  4(4)  e00210
Regulation of monocot and dicot plant development with constitutively active alleles of phytochrome B.
Fang G., Yang S., Ruan B., Liu C., Zhang A., Jiang H., Ding S., Tian B., Zhang Y., Jahan N., Zhu L., Zhang G., Dong G., Zhang Q., Zeng D., Guo L., Gao Z., Qian Q.
Rice (N Y) 2020  13(1)  49
Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice.
Lin D., Kong R., Chen L., Wang Y., Wu L., Xu J., Piao Z., Lee G., Dong Y.
Sci Rep 2020  10(1)  8518
Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice.
Kusano M., Fukushima A., Tabuchi-Kobayashi M., Funayama K., Kojima S., Maruyama K., Yamamoto Y.Y., Nishizawa T., Kobayashi M., Wakazaki M., Sato M., Toyooka K., Osanai-Kondo K., Utsumi Y., Seki M., Fukai C., Saito K., Yamaya T.
Plant Physiol. 2020  182(4)  1894-1909
Cytosolic GLUTAMINE SYNTHETASE1;1 Modulates Metabolism and Chloroplast Development in Roots.
Lin D., Zhang L., Mei J., Chen J., Piao Z., Lee G., Dong Y.
Plant Biol (Stuttg) 2019  21(4)  585-594
Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.
Zhang Q., Shen L., Wang Z., Hu G., Ren D., Hu J., Zhu L., Gao Z., Zhang G., Guo L., Zeng D., Qian Q.
Int J Mol Sci 2019  20(18) 
OsCAF1, a CRM Domain Containing Protein, Influences Chloroplast Development.
Das P., Lakra N., Nutan K.K., Singla-Pareek SL., Pareek A.
Rice (N Y) 2019  12(1)  58
A unique bZIP transcription factor imparting multiple stress tolerance in Rice.
Cheng R., Gong L., Li Z., Liang Y.K.
J. Plant Physiol. 2019  232  39-50
Rice BIG gene is required for seedling viability.
Lin D., Jiang Q., Ma X., Zheng K., Gong X., Teng S., Xu J., Dong Y.
G3 (Bethesda) 2018  8(1)  253-263
Rice <i>TSV3</i> Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.
Yamatani H., Kohzuma K., Nakano M., Takami T., Kato Y., Hayashi Y., Monden Y., Okumoto Y., Abe T., Kumamaru T., Tanaka A., Sakamoto W., Kusaba M.
J. Exp. Bot. 2018  69(5)  1027-1035
Impairment of Lhca4, a subunit of LHCI, causes high accumulation of chlorophyll and the stay-green phenotype in rice.
Xiao H., Xu Y., Ni C., Zhang Q., Zhong F., Huang J., Liu W., Peng L., Zhu Y., Hu J.
J. Exp. Bot. 2018  69(12)  2923-2936
A rice dual-localized pentatricopeptide repeat protein is involved in organellar RNA editing together with OsMORFs.
Chen N., Wang P., Li C., Wang Q., Pan J., Xiao F., Wang Y., Zhang K., Li C., Yang B., Sun C., Deng X.
Plant Cell Physiol. 2018   
A single nucleotide mutation of IspE gene participating in the MEP pathway for isoprenoid biosynthesis causes green-revertible yellow leaf phenotype in rice.
Li H., Ji G., Wang Y., Qian Q., Xu J., Sodmergen, Liu G., Zhao X., Chen M., Zhai W., Li D., Zhu L.
Front Plant Sci 2018  9  762
WHITE PANICLE3, a Novel Nucleus-Encoded Mitochondrial Protein, Is Essential for Proper Development and Maintenance of Chloroplasts and Mitochondria in Rice.
Lin D., Zheng K., Liu Z., Li Z., Teng S., Xu J., Dong Y.
Plant Genome 2018  11(1) 
Rice <i>TCM1</i> Encoding a Component of the TAC Complex is Required for Chloroplast Development under Cold Stress.
Li S., Tian Y., Wu K., Ye Y., Yu J., Zhang J., Liu Q., Hu M., Li H., Tong Y., Harberd N.P., Fu X.
Nature 2018  560(7720)  595-600
Modulating plant growth-metabolism coordination for sustainable agriculture.
Tran L.H., Jung S.
Int J Mol Sci 2017  18(3) 
Effects of Light-Emitting Diode Irradiation on Growth Characteristics and Regulation of Porphyrin Biosynthesis in Rice Seedlings.
Li Y.Y., Shen A., Xiong W., Sun Q.L., Luo Q., Song T., Li Z.L., Luan W.J.
Rice (N Y) 2016  9(1)  46
Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
Zhu X., Liang S., Yin J., Yuan C., Wang J., Li W., He M., Wang J., Chen W., Ma B., Wang Y., Qin P., Li S., Chen X.
Gene 2015   
The DnaJ OsDjA7/8 is essential for chloroplast development in rice (Oryza sativa).
Wang Y.a, Jiang X.a, Li K.a, Wu M.a b, Zhang R.a, Zhang L.a, Chen G.a
Biometals 2014  27  389-401
Photosynthetic responses of Oryza sativa L. seedlings to cadmium stress: Physiological, biochemical and ultrastructural analyses
Deng X.J., Zhang H.Q., Wang Y., He F., Liu J.L., Xiao X., Shu Z.F., Li W., Wang G.H., Wang G.L.
PLoS ONE 2014  9(6)  e99564
Mapped clone and functional analysis of leaf-color gene ygl7 in a rice hybrid (Oryza sativa L. ssp. indica).
Dong H., Fei G.L., Wu C.Y., Wu F.Q., Sun Y.Y., Chen M.J., Ren Y.L., Zhou K.N., Cheng Z.J., Wang J.L., Jiang L., Zhang X., Guo X.P., Lei C.L., Su N., Wang H., Wan J.M.
Plant Physiol. 2013  162(4)  1867-80
A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants.
Chen H., Cheng Z., Ma X., Wu H., Liu Y., Zhou K., Chen Y., Ma W., Bi J., Zhang X., Guo X., Wang J., Lei C., Wu F., Lin Q., Liu Y., Liu L., Jiang L.
Plant Cell Rep. 2013  32(12)  1855-67
A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice.
Zhou K., Ren Y., Lv J., Wang Y., Liu F., Zhou F., Zhao S., Chen S., Peng C., Zhang X., Guo X., Cheng Z., Wang J., Wu F., Jiang L., Wan J.
Planta 2013  237(1)  279-92
Young leaf chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice.
Kim S.R., An G.
J. Plant Physiol. 2013  170(9)  854-63
Rice chloroplast-localized heat shock protein 70, OsHsp70CP1, is essential for chloroplast development under high-temperature conditions.
Park S.H., Chung P.J., Juntawong P., Bailey-Serres J., Kim Y.S., Jung H., Bang S.W., Kim Y.K., Do Choi Y., Kim J.K.
Plant Physiol. 2012  159(3)  1111-24
Posttranscriptional Control of Photosynthetic mRNA Decay under Stress Conditions Requires 3' and 5' Untranslated Regions and Correlates with Differential Polysome Association in Rice.
Zhang Y., Su J., Duan S., Ao Y., Dai J., Liu J., Wang P., Li Y., Liu B., Feng D., Wang J., Wang H.
Plant Methods 2011  7(1)  30
A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
Higuchi-Takeuchi M., Ichikawa T., Kondou Y., Matsui K., Hasegawa Y., Kawashima M., Sonoike K., Mori M., Hirochika H., Matsui M.
Plant Physiol. 2011  157(1)  96-108
Functional analysis of two isoforms of leaf-type Ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis.
Wu,Z., Zhang,X., He,B., Diao,L., Sheng,S., Wang,J., Guo,X., Su,N., Wang,L., Jiang,L., Wang,C., Zhai,H. and Wan,J.
Plant Physiol. 2007  145(1)  29-40
A chlorophyll-deficient rice mutant with impaired chlorophyllide esterification in chlorophyll biosynthesis
Ishikawa R., Tamaki S., Yokoi S., Inagaki N., Shinomura T., Takano M., Shimamoto K.
Plant Cell 2005  17(12)  3326-36
Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice.
N Sugiyama, T Izawa, T Oikawa, K Shimamoto
Plant J. 2001  26(6)  607-15
Light regulation of circadian clock-controlled gene expression in rice.
Luan,S. and Bogorad,L.
Plant Cell 1992  4(8)  971-981
A rice cab gene promoter contains separate cis-acting elements that regulate expression in dicot and monocot plants.
Plant Cell Physiol. 1990  31(4)  519-526
Classification and characterization of cDNA that encodes the light-harvesting chlorophyll a/b binding protein of photosystem II from rice
Luan,S. and Bogorad,L.
Nucleic Acids Res. 1989  17(6)  2357-2358
Nucleotide sequences of two genes encoding the light harvesting chlorophyll a/b binding protein of rice.
TextPresso Search Search textpresso for CAB1R ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology photosystem I( GO:0009522 )
chloroplast( GO:0009507 )
magnesium ion binding( GO:0000287 )
protein-chromophore linkage( GO:0018298 )
plastid( GO:0009536 )
chloroplast thylakoid membrane( GO:0009535 )
photosystem II( GO:0009523 )
photosynthesis, light harvesting( GO:0009765 )
photosynthesis( GO:0015979 )
integral to membrane( GO:0016021 )
circadian rhythm( GO:0007623 )
chloroplast organization( GO:0009658 )
response to blue light( GO:0009637 )
response to red light( GO:0010114 )
chlorophyll binding( GO:0016168 )
Trait Ontology chloroplast development trait( TO:0002715 )
blue light sensitivity( TO:0000159 )
red light sensitivity( TO:0000158 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Jul 3, 2023