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Basic Information
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CGSNL Gene Symbol
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CAB1R
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Gene Symbol Synonym
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cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R
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CGSNL Gene Name
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CHLOROPHYLL A/B BINDING PROTEIN 1R
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Gene Name Synonym
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"Chlorophyll a-b binding protein 1, chloroplast precursor", "Chlorophyll a-b binding protein 1, chloroplast", LHCII type I CAB-1, LHCII type I CAB, chlorophyll a/b-binding protein 1, light-harvesting chlorophyll a/b binding protein 1, PSII Cab1
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Protein Name
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CHLOROPHYLL A/B BINDING PROTEIN 1R
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Allele
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Chromosome No.
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9
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Explanation
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P12330. X13908. D00641. a clock-controlled gene. Lhcb1b in Yamatani et al. 2018. CAB2R in Fang et al. 2020.
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Trait Class
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Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK060851
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MSU ID
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LOC_Os09g17740.1
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RAP ID
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Os09g0346500
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Lin D., Zhang T., Chen Y., Fan M., Kong R., Chen L., Wang Y., Xu J., Dong Y.
Biology (Basel) 2022 11(12)
Rice <i>TCD8</i> Encoding a multi-domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.
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Xu T., Zhang J., Liu Y., Zhang Q., Li W., Zhang Y., Wu M., Chen T., Ding D., Wang W., Zhang Z.
Front Plant Sci 2022 13 986678
Exon skipping in <i>IspE</i> Gene is associated with abnormal chloroplast development in rice <i>albino leaf 4</i> mutant.
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Xu J., Ji Z., Wang C., Xu F., Wang F., Zheng Y., Tang Y., Wei Z., Zhao T., Zhao K.
Front Plant Sci 2022 13 918673
<i>WATER-SOAKED SPOT1</i> Controls Chloroplast Development and leaf senescence <i>via</i> Regulating Reactive Oxygen Species Homeostasis in Rice.
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Sun C., Zhang K., Zhou Y., Xiang L., He C., Zhong C., Li K., Wang Q., Yang C., Wang Q., Chen C., Chen D., Wang Y., Liu C., Yang B., Wu H., Chen X., Li W., Wang J., Xu P., Wang P., Fang J., Chu C., Deng X.
Plant Biotechnol. J. 2021 19(8) 1644-1657
Dual function of clock component OsLHY sets critical day length for photoperiodic flowering in rice.
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Lian L., Lin Y., Wei Y., He W., Cai Q., Huang W., Zheng Y., Xu H., Wang F., Zhu Y., Luo X., Xie H., Zhang J.
BMC Plant Biol. 2021 21(1) 287
PEPC of sugarcane regulated glutathione S-transferase and altered carbon-nitrogen metabolism under different N source concentrations in Oryza sativa.
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Wang Q., Zhu B., Chen C., Yuan Z., Guo J., Yang X., Wang S., Lv Y., Liu Q., Yang B., Sun C., Wang P., Deng X.
Rice (N Y) 2021 14(1) 50
A Single Nucleotide Substitution of GSAM Gene Causes Massive Accumulation of Glutamate 1-Semialdehyde and Yellow Leaf Phenotype in Rice.
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Hu W., Figueroa-Balderas R., Chi-Ham C., Lagarias J.C.
Plant Direct 2020 4(4) e00210
Regulation of monocot and dicot plant development with constitutively active alleles of phytochrome B.
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Fang G., Yang S., Ruan B., Liu C., Zhang A., Jiang H., Ding S., Tian B., Zhang Y., Jahan N., Zhu L., Zhang G., Dong G., Zhang Q., Zeng D., Guo L., Gao Z., Qian Q.
Rice (N Y) 2020 13(1) 49
Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice.
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Lin D., Kong R., Chen L., Wang Y., Wu L., Xu J., Piao Z., Lee G., Dong Y.
Sci Rep 2020 10(1) 8518
Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice.
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Kusano M., Fukushima A., Tabuchi-Kobayashi M., Funayama K., Kojima S., Maruyama K., Yamamoto Y.Y., Nishizawa T., Kobayashi M., Wakazaki M., Sato M., Toyooka K., Osanai-Kondo K., Utsumi Y., Seki M., Fukai C., Saito K., Yamaya T.
Plant Physiol. 2020 182(4) 1894-1909
Cytosolic GLUTAMINE SYNTHETASE1;1 Modulates Metabolism and Chloroplast Development in Roots.
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Lin D., Zhang L., Mei J., Chen J., Piao Z., Lee G., Dong Y.
Plant Biol (Stuttg) 2019 21(4) 585-594
Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.
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Zhang Q., Shen L., Wang Z., Hu G., Ren D., Hu J., Zhu L., Gao Z., Zhang G., Guo L., Zeng D., Qian Q.
Int J Mol Sci 2019 20(18)
OsCAF1, a CRM Domain Containing Protein, Influences Chloroplast Development.
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Das P., Lakra N., Nutan K.K., Singla-Pareek SL., Pareek A.
Rice (N Y) 2019 12(1) 58
A unique bZIP transcription factor imparting multiple stress tolerance in Rice.
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Cheng R., Gong L., Li Z., Liang Y.K.
J. Plant Physiol. 2019 232 39-50
Rice BIG gene is required for seedling viability.
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Lin D., Jiang Q., Ma X., Zheng K., Gong X., Teng S., Xu J., Dong Y.
G3 (Bethesda) 2018 8(1) 253-263
Rice <i>TSV3</i> Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.
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Yamatani H., Kohzuma K., Nakano M., Takami T., Kato Y., Hayashi Y., Monden Y., Okumoto Y., Abe T., Kumamaru T., Tanaka A., Sakamoto W., Kusaba M.
J. Exp. Bot. 2018 69(5) 1027-1035
Impairment of Lhca4, a subunit of LHCI, causes high accumulation of chlorophyll and the stay-green phenotype in rice.
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Xiao H., Xu Y., Ni C., Zhang Q., Zhong F., Huang J., Liu W., Peng L., Zhu Y., Hu J.
J. Exp. Bot. 2018 69(12) 2923-2936
A rice dual-localized pentatricopeptide repeat protein is involved in organellar RNA editing together with OsMORFs.
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Chen N., Wang P., Li C., Wang Q., Pan J., Xiao F., Wang Y., Zhang K., Li C., Yang B., Sun C., Deng X.
Plant Cell Physiol. 2018
A single nucleotide mutation of IspE gene participating in the MEP pathway for isoprenoid biosynthesis causes green-revertible yellow leaf phenotype in rice.
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Li H., Ji G., Wang Y., Qian Q., Xu J., Sodmergen, Liu G., Zhao X., Chen M., Zhai W., Li D., Zhu L.
Front Plant Sci 2018 9 762
WHITE PANICLE3, a Novel Nucleus-Encoded Mitochondrial Protein, Is Essential for Proper Development and Maintenance of Chloroplasts and Mitochondria in Rice.
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Lin D., Zheng K., Liu Z., Li Z., Teng S., Xu J., Dong Y.
Plant Genome 2018 11(1)
Rice <i>TCM1</i> Encoding a Component of the TAC Complex is Required for Chloroplast Development under Cold Stress.
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Li S., Tian Y., Wu K., Ye Y., Yu J., Zhang J., Liu Q., Hu M., Li H., Tong Y., Harberd N.P., Fu X.
Nature 2018 560(7720) 595-600
Modulating plant growth-metabolism coordination for sustainable agriculture.
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Tran L.H., Jung S.
Int J Mol Sci 2017 18(3)
Effects of Light-Emitting Diode Irradiation on Growth Characteristics and Regulation of Porphyrin Biosynthesis in Rice Seedlings.
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Li Y.Y., Shen A., Xiong W., Sun Q.L., Luo Q., Song T., Li Z.L., Luan W.J.
Rice (N Y) 2016 9(1) 46
Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
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Zhu X., Liang S., Yin J., Yuan C., Wang J., Li W., He M., Wang J., Chen W., Ma B., Wang Y., Qin P., Li S., Chen X.
Gene 2015
The DnaJ OsDjA7/8 is essential for chloroplast development in rice (Oryza sativa).
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Wang Y.a, Jiang X.a, Li K.a, Wu M.a b, Zhang R.a, Zhang L.a, Chen G.a
Biometals 2014 27 389-401
Photosynthetic responses of Oryza sativa L. seedlings to cadmium stress: Physiological, biochemical and ultrastructural analyses
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Deng X.J., Zhang H.Q., Wang Y., He F., Liu J.L., Xiao X., Shu Z.F., Li W., Wang G.H., Wang G.L.
PLoS ONE 2014 9(6) e99564
Mapped clone and functional analysis of leaf-color gene ygl7 in a rice hybrid (Oryza sativa L. ssp. indica).
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Dong H., Fei G.L., Wu C.Y., Wu F.Q., Sun Y.Y., Chen M.J., Ren Y.L., Zhou K.N., Cheng Z.J., Wang J.L., Jiang L., Zhang X., Guo X.P., Lei C.L., Su N., Wang H., Wan J.M.
Plant Physiol. 2013 162(4) 1867-80
A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants.
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Chen H., Cheng Z., Ma X., Wu H., Liu Y., Zhou K., Chen Y., Ma W., Bi J., Zhang X., Guo X., Wang J., Lei C., Wu F., Lin Q., Liu Y., Liu L., Jiang L.
Plant Cell Rep. 2013 32(12) 1855-67
A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice.
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Zhou K., Ren Y., Lv J., Wang Y., Liu F., Zhou F., Zhao S., Chen S., Peng C., Zhang X., Guo X., Cheng Z., Wang J., Wu F., Jiang L., Wan J.
Planta 2013 237(1) 279-92
Young leaf chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice.
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Kim S.R., An G.
J. Plant Physiol. 2013 170(9) 854-63
Rice chloroplast-localized heat shock protein 70, OsHsp70CP1, is essential for chloroplast development under high-temperature conditions.
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Park S.H., Chung P.J., Juntawong P., Bailey-Serres J., Kim Y.S., Jung H., Bang S.W., Kim Y.K., Do Choi Y., Kim J.K.
Plant Physiol. 2012 159(3) 1111-24
Posttranscriptional Control of Photosynthetic mRNA Decay under Stress Conditions Requires 3' and 5' Untranslated Regions and Correlates with Differential Polysome Association in Rice.
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Zhang Y., Su J., Duan S., Ao Y., Dai J., Liu J., Wang P., Li Y., Liu B., Feng D., Wang J., Wang H.
Plant Methods 2011 7(1) 30
A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
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Higuchi-Takeuchi M., Ichikawa T., Kondou Y., Matsui K., Hasegawa Y., Kawashima M., Sonoike K., Mori M., Hirochika H., Matsui M.
Plant Physiol. 2011 157(1) 96-108
Functional analysis of two isoforms of leaf-type Ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis.
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Wu,Z., Zhang,X., He,B., Diao,L., Sheng,S., Wang,J., Guo,X., Su,N., Wang,L., Jiang,L., Wang,C., Zhai,H. and Wan,J.
Plant Physiol. 2007 145(1) 29-40
A chlorophyll-deficient rice mutant with impaired chlorophyllide esterification in chlorophyll biosynthesis
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Ishikawa R., Tamaki S., Yokoi S., Inagaki N., Shinomura T., Takano M., Shimamoto K.
Plant Cell 2005 17(12) 3326-36
Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice.
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N Sugiyama, T Izawa, T Oikawa, K Shimamoto
Plant J. 2001 26(6) 607-15
Light regulation of circadian clock-controlled gene expression in rice.
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Luan,S. and Bogorad,L.
Plant Cell 1992 4(8) 971-981
A rice cab gene promoter contains separate cis-acting elements that regulate expression in dicot and monocot plants.
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Matsuoka,M.
Plant Cell Physiol. 1990 31(4) 519-526
Classification and characterization of cDNA that encodes the light-harvesting chlorophyll a/b binding protein of photosystem II from rice
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Luan,S. and Bogorad,L.
Nucleic Acids Res. 1989 17(6) 2357-2358
Nucleotide sequences of two genes encoding the light harvesting chlorophyll a/b binding protein of rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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photosystem I( GO:0009522 )
chloroplast( GO:0009507 )
magnesium ion binding( GO:0000287 )
protein-chromophore linkage( GO:0018298 )
plastid( GO:0009536 )
chloroplast thylakoid membrane( GO:0009535 )
photosystem II( GO:0009523 )
photosynthesis, light harvesting( GO:0009765 )
photosynthesis( GO:0015979 )
integral to membrane( GO:0016021 )
circadian rhythm( GO:0007623 )
chloroplast organization( GO:0009658 )
response to blue light( GO:0009637 )
response to red light( GO:0010114 )
chlorophyll binding( GO:0016168 )
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Trait Ontology
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chloroplast development trait( TO:0002715 )
blue light sensitivity( TO:0000159 )
red light sensitivity( TO:0000158 )
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Plant Ontology
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Related Strains
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Phenotype images
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Last updated
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Jul 3, 2023
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Update info.