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Basic Information
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CGSNL Gene Symbol
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SE5
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Gene Symbol Synonym
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Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
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CGSNL Gene Name
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PHOTOSENSITIVITY 5
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Gene Name Synonym
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Photosensitivity5, Photosensitivity 5, Photoperiod-sensitivity-5, heme oxygenase 1, heme oxygenase-1, haem oxygenase-1, photoperiod sensitivity5, PHOTOPERIOD SENSITIVITY 5, YELLOW-GREEN LEAF2, YELLOW GREEN LEAF 2
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Protein Name
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HEME OXYGENASE 1
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Allele
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se5, ygl2
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Chromosome No.
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6
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Explanation
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LOC_Os06g40080. Q69XJ4. EU781632. C28969. ACE98543. Earliness due to the loss of photoperiod sensitivity. Earlier by 46 days than the original cultivar Norin 8 under natural long-day. [RGN10:9] GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. a rice homologue of Arabidopsis HY1.
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Trait Class
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Biochemical character
Vegetative organ - Leaf
Reproductive organ - Heading date
Coloration - Chlorophyll
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK068856
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MSU ID
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LOC_Os06g40080.1
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RAP ID
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Os06g0603000
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Liu Z., Wang Z., Gu H., You J., Hu M., Zhang Y., Zhu Z., Wang Y., Liu S., Chen L., Liu X., Tian Y., Zhou S., Jiang L., Liu L., Wan J.
Front Plant Sci 2018 9 782
Identification and Phenotypic Characterization of <i>ZEBRA LEAF16</i> Encoding a beta-hydroxyacyl-ACP dehydratase in Rice.
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Li R.Q., Jiang M., Liu Y.H., Zheng Y.C., Huang J.Z., Wu J.M., Shu Q.Y.
Front Plant Sci 2017 8 901
The xantha Marker Trait Is Associated with Altered Tetrapyrrole Biosynthesis and Deregulated Transcription of PhANGs in Rice.
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Guo H., Zhou H., Zhang J., Guan W., Xu S., Shen W., Xu G., Xie Y., Foyer C.H.
Plant Cell Environ. 2017 40(9) 1777-1790
l-cysteine desulfhydrase-related H2 S production is involved in OsSE5-promoted ammonium tolerance in roots of Oryza sativa.
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Xie Y., Mao Y., Xu S., Zhou H., Duan X., Cui W., Zhang J., Xu G.
Plant Cell Environ. 2014
heme-heme oxygenase 1 system is involved in ammonium tolerance by regulating antioxidant defence in Oryza sativa.
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Chen Y.H., Chao Y.Y., Hsu Y.Y., Kao C.H.
Plant Cell Rep. 2013 32(2) 219-26
Heme oxygenase is involved in H(2)O (2)-induced lateral root formation in apocynin-treated rice.
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Chen H., Cheng Z., Ma X., Wu H., Liu Y., Zhou K., Chen Y., Ma W., Bi J., Zhang X., Guo X., Wang J., Lei C., Wu F., Lin Q., Liu Y., Liu L., Jiang L.
Plant Cell Rep. 2013 32(12) 1855-67
A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice.
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Wei M.Y., Chao Y.Y., Kao C.H.
Plant Growth Regul. 2013 69 209-214
NaCl-induced heme oxygenase in roots of rice seedlings is mediated through hydrogen peroxide
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Hsu Y.Y., Chao Y.Y., Kao C.H.
J. Plant Physiol. 2013 170(12) 1075-81
Cobalt chloride-induced lateral root formation in rice: The role of heme oxygenase.
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Hsu Y.Y., Chao Y.Y., Kao C.H.
J. Plant Physiol. 2013 170(1) 63-9
Methyl jasmonate-induced lateral root formation in rice: the role of heme oxygenase and calcium.
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Sun C., Fang J., Zhao T., Xu B., Zhang F., Liu L., Tang J., Zhang G., Deng X., Chen F., Qian Q., Cao X., Chu C.
Plant Cell 2012 24(8) 3235-47
The histone methyltransferase SDG724 Mediates H3K36me2/3 Deposition at MADS50 and RFT1 and Promotes Flowering in Rice.
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Han B., Xu S., Xie Y.J., Huang J.J., Wang L.J., Yang Z., Zhang C.H., Sun Y., Shen W.B., Xie G.S.
Plant Sci. 2012 184 63-74
ZmHO-1, a maize haem oxygenase-1 gene, plays a role in determining lateral root development.
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Chen Y.H., Chao Y.Y., Hsu Y.Y., Hong C.Y., Kao C.H.
Plant Cell Rep. 2012 31 1085-1091
Heme oxygenase is involved in nitric oxide- and auxin-induced lateral root formation in rice.
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Yen Hsu Y., Chao Y.Y., Huei Kao C.
Plant Signal Behav 2012 7(7) 885-7
Biliverdin-promoted lateral root formation is mediated through heme oxygenase in rice.
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Izawa T. , Mihara M. , Suzuki Y. , Gupta M. , Itoh H. , Nagano A.J. , Motoyama R. , Sawada Y. , Yano M. , Hirai M.Y. , Makino A. , Nagamura Y.
Plant Cell 2011 23(5) 1741-55
Os-GIGANTEA Confers Robust Diurnal Rhythms on the Global Transcriptome of Rice in the Field.
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Takano M,Inagaki N,Xie X,Kiyota S,Baba-Kasai A,Tanabata T,Shinomura T
Proc. Natl. Acad. Sci. U.S.A. 2009 106(34) 14705-10
Phytochromes are the sole photoreceptors for perceiving red/far-red light in rice.
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Izawa, T., T. Oikawa, N. Sugiyama, T. Tanisaka, M. Yano and K. Shimamoto
Genes Dev. 2002 16 2006-2020
Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice.
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Hayama, R., T. Izawa and K. Shimamoto
Plant Cell Physiol. 2002 43 494-504.
Isolation of rice genes possibly involved in the photoperiodic control of flowering by a fluorescent differential display method.
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Izawa, T., T. Oikawa, S. Tokutomi, K. Okuno and K. Shimamoto
Plant J. 2000 22 (5) 391-399
Phytochromes confer the photoperiodic control of flowering in rice (a short-day plant).
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Yokoo, M. and K. Okuno
Japan. J. Breed. 1993 43 1-11.
Genetic analysis of earliness mutations induced in the rice cultivar Norin 8.
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Kinoshita, T.
RGN 1993 10 7-10
I. Registration of new gene symbols.
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DB Reference
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Gramene ID
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GR:0060864
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Ontologies
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Gene Ontology
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transcription factor activity( GO:0003700 )
phytochromobilin biosynthetic process( GO:0010024 )
heme oxygenase (decyclizing) activity( GO:0004392 )
plastid( GO:0009536 )
response to ammonium ion( GO:0060359 )
response to oxidative stress( GO:0006979 )
heme oxidation( GO:0006788 )
regulation of chlorophyll biosynthetic process( GO:0010380 )
chloroplast organization( GO:0009658 )
inflorescence development( GO:0010229 )
chloroplast-nucleus signaling pathway( GO:0010019 )
red, far-red light phototransduction( GO:0009585 )
chloroplast( GO:0009507 )
photoperiodism, flowering( GO:0048573 )
heme binding( GO:0020037 )
photosynthesis( GO:0015979 )
regulation of meristem growth( GO:0010075 )
photoperiodism( GO:0009648 )
response to cold( GO:0009409 )
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Trait Ontology
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days to maturity( TO:0000469 )
salt sensitivity( TO:0000429 )
days to heading( TO:0000137 )
photoperiod sensitivity( TO:0000229 )
chlorophyll content( TO:0000495 )
chlorophyll ratio( TO:0000298 )
chloroplast development trait( TO:0002715 )
leaf color( TO:0000326 )
carotenoid content( TO:0000496 )
plant height( TO:0000207 )
flowering time( TO:0002616 )
temperature response trait( TO:0000432 )
cold tolerance( TO:0000303 )
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Plant Ontology
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coleoptile( PO:0020033 )
spikelet floret( PO:0009082 )
seed( PO:0009010 )
portion of meristem tissue( PO:0009013 )
inflorescence( PO:0009049 )
shoot apical meristem( PO:0020148 )
flag leaf( PO:0020103 )
leaf( PO:0025034 )
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Related Strains
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Phenotype images
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Last updated
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Jan 26, 2019
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