Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SE5
Gene Symbol Synonym Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
Gene Name Synonym Photosensitivity5, Photosensitivity 5, Photoperiod-sensitivity-5, heme oxygenase 1, heme oxygenase-1, haem oxygenase-1, photoperiod sensitivity5, PHOTOPERIOD SENSITIVITY 5, YELLOW-GREEN LEAF2, YELLOW GREEN LEAF 2
Allele se5, ygl2
Chromosome No. 6
Explanation LOC_Os06g40080. Q69XJ4. EU781632. C28969. ACE98543. Earliness due to the loss of photoperiod sensitivity. Earlier by 46 days than the original cultivar Norin 8 under natural long-day. [RGN10:9] GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. a rice homologue of Arabidopsis HY1.
Trait Class Biochemical character
Vegetative organ - Leaf
Reproductive organ - Heading date
Coloration - Chlorophyll
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK068856
MSU ID LOC_Os06g40080.1
RAP ID Os06g0603000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Liu Z., Wang Z., Gu H., You J., Hu M., Zhang Y., Zhu Z., Wang Y., Liu S., Chen L., Liu X., Tian Y., Zhou S., Jiang L., Liu L., Wan J.
Front Plant Sci 2018  9  782
Identification and Phenotypic Characterization of <i>ZEBRA LEAF16</i> Encoding a beta-hydroxyacyl-ACP dehydratase in Rice.
Li R.Q., Jiang M., Liu Y.H., Zheng Y.C., Huang J.Z., Wu J.M., Shu Q.Y.
Front Plant Sci 2017  8  901
The xantha Marker Trait Is Associated with Altered Tetrapyrrole Biosynthesis and Deregulated Transcription of PhANGs in Rice.
Guo H., Zhou H., Zhang J., Guan W., Xu S., Shen W., Xu G., Xie Y., Foyer C.H.
Plant Cell Environ. 2017  40(9)  1777-1790
l-cysteine desulfhydrase-related H2 S production is involved in OsSE5-promoted ammonium tolerance in roots of Oryza sativa.
Xie Y., Mao Y., Xu S., Zhou H., Duan X., Cui W., Zhang J., Xu G.
Plant Cell Environ. 2014   
heme-heme oxygenase 1 system is involved in ammonium tolerance by regulating antioxidant defence in Oryza sativa.
Chen Y.H., Chao Y.Y., Hsu Y.Y., Kao C.H.
Plant Cell Rep. 2013  32(2)  219-26
Heme oxygenase is involved in H(2)O (2)-induced lateral root formation in apocynin-treated rice.
Chen H., Cheng Z., Ma X., Wu H., Liu Y., Zhou K., Chen Y., Ma W., Bi J., Zhang X., Guo X., Wang J., Lei C., Wu F., Lin Q., Liu Y., Liu L., Jiang L.
Plant Cell Rep. 2013  32(12)  1855-67
A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice.
Wei M.Y., Chao Y.Y., Kao C.H.
Plant Growth Regul. 2013  69  209-214
NaCl-induced heme oxygenase in roots of rice seedlings is mediated through hydrogen peroxide
Hsu Y.Y., Chao Y.Y., Kao C.H.
J. Plant Physiol. 2013  170(12)  1075-81
Cobalt chloride-induced lateral root formation in rice: The role of heme oxygenase.
Hsu Y.Y., Chao Y.Y., Kao C.H.
J. Plant Physiol. 2013  170(1)  63-9
Methyl jasmonate-induced lateral root formation in rice: the role of heme oxygenase and calcium.
Sun C., Fang J., Zhao T., Xu B., Zhang F., Liu L., Tang J., Zhang G., Deng X., Chen F., Qian Q., Cao X., Chu C.
Plant Cell 2012  24(8)  3235-47
The histone methyltransferase SDG724 Mediates H3K36me2/3 Deposition at MADS50 and RFT1 and Promotes Flowering in Rice.
Han B., Xu S., Xie Y.J., Huang J.J., Wang L.J., Yang Z., Zhang C.H., Sun Y., Shen W.B., Xie G.S.
Plant Sci. 2012  184  63-74
ZmHO-1, a maize haem oxygenase-1 gene, plays a role in determining lateral root development.
Chen Y.H., Chao Y.Y., Hsu Y.Y., Hong C.Y., Kao C.H.
Plant Cell Rep. 2012  31  1085-1091
Heme oxygenase is involved in nitric oxide- and auxin-induced lateral root formation in rice.
Yen Hsu Y., Chao Y.Y., Huei Kao C.
Plant Signal Behav 2012  7(7)  885-7
Biliverdin-promoted lateral root formation is mediated through heme oxygenase in rice.
Izawa T. , Mihara M. , Suzuki Y. , Gupta M. , Itoh H. , Nagano A.J. , Motoyama R. , Sawada Y. , Yano M. , Hirai M.Y. , Makino A. , Nagamura Y.
Plant Cell 2011  23(5)  1741-55
Os-GIGANTEA Confers Robust Diurnal Rhythms on the Global Transcriptome of Rice in the Field.
Takano M,Inagaki N,Xie X,Kiyota S,Baba-Kasai A,Tanabata T,Shinomura T
Proc. Natl. Acad. Sci. U.S.A. 2009  106(34)  14705-10
Phytochromes are the sole photoreceptors for perceiving red/far-red light in rice.
Izawa, T., T. Oikawa, N. Sugiyama, T. Tanisaka, M. Yano and K. Shimamoto
Genes Dev. 2002  16  2006-2020
Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice.
Hayama, R., T. Izawa and K. Shimamoto
Plant Cell Physiol. 2002  43  494-504.
Isolation of rice genes possibly involved in the photoperiodic control of flowering by a fluorescent differential display method.
Izawa, T., T. Oikawa, S. Tokutomi, K. Okuno and K. Shimamoto
Plant J. 2000  22 (5)  391-399
Phytochromes confer the photoperiodic control of flowering in rice (a short-day plant).
Yokoo, M. and K. Okuno
Japan. J. Breed. 1993  43  1-11.
Genetic analysis of earliness mutations induced in the rice cultivar Norin 8.
Kinoshita, T.
RGN 1993  10  7-10
I. Registration of new gene symbols.
TextPresso Search Search textpresso for SE5 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060864
Gene Ontology transcription factor activity( GO:0003700 )
phytochromobilin biosynthetic process( GO:0010024 )
heme oxygenase (decyclizing) activity( GO:0004392 )
plastid( GO:0009536 )
response to ammonium ion( GO:0060359 )
response to oxidative stress( GO:0006979 )
heme oxidation( GO:0006788 )
regulation of chlorophyll biosynthetic process( GO:0010380 )
chloroplast organization( GO:0009658 )
inflorescence development( GO:0010229 )
chloroplast-nucleus signaling pathway( GO:0010019 )
red, far-red light phototransduction( GO:0009585 )
chloroplast( GO:0009507 )
photoperiodism, flowering( GO:0048573 )
heme binding( GO:0020037 )
photosynthesis( GO:0015979 )
regulation of meristem growth( GO:0010075 )
photoperiodism( GO:0009648 )
response to cold( GO:0009409 )
Trait Ontology days to maturity( TO:0000469 )
salt sensitivity( TO:0000429 )
days to heading( TO:0000137 )
photoperiod sensitivity( TO:0000229 )
chlorophyll content( TO:0000495 )
chlorophyll ratio( TO:0000298 )
chloroplast development trait( TO:0002715 )
leaf color( TO:0000326 )
carotenoid content( TO:0000496 )
plant height( TO:0000207 )
flowering time( TO:0002616 )
temperature response trait( TO:0000432 )
cold tolerance( TO:0000303 )
Plant Ontology coleoptile( PO:0020033 )
spikelet floret( PO:0009082 )
seed( PO:0009010 )
portion of meristem tissue( PO:0009013 )
inflorescence( PO:0009049 )
shoot apical meristem( PO:0020148 )
flag leaf( PO:0020103 )
leaf( PO:0025034 )
Related Strains
Phenotype images
Last updated
Jan 26, 2019