Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol PCL1
Gene Symbol Synonym OsPCL1, OsLUX, LUX, OsLVP2, LVP2
CGSNL Gene Name PHYTOCLOCK 1
Gene Name Synonym PCL1 homolog, LUX ARRHYTHMO, long vegetative phase2
Protein Name
Allele lvp2-1, lvp2-2, lvp2-3, lvp2-4, lvp2-5, lvp2-6, lvp2-7, lux, oslux
Chromosome No. 1
Explanation AY581256. AB206578. Q94DH3. Circadian clock-associated gene. GO:2000028: regulation of photoperiodism, flowering. TO:0000934: photoperiod-sensitive flowering time trait.
Trait Class Reproductive organ - Heading date
Heterochrony
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Expression
Sequence/Locus
cDNA Accession No. AY581256
MSU ID LOC_Os01g74020.1
RAP ID Os01g0971800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Huang P., Ding Z., Duan M., Xiong Y., Li X., Yuan X., Huang J.
Int J Mol Sci 2023  24(7) 
<i>OsLUX</i> Confers Rice cold tolerance as a Positive Regulatory Factor.
Kim T.H., Kim S.M.
Plants (Basel) 2023  12(6) 
Identification of Candidate Genes for salt tolerance at the Seedling Stage Using Integrated Genome-Wide Association Study and Transcriptome Analysis in Rice.
Cai Z., Zhang Y., Tang W., Chen X., Lin C., Liu Y., Ye Y., Wu W., Duan Y.
Front Plant Sci 2022  13  853042
LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.
Andrade L., Lu Y., Cordeiro A., Costa J.M.F., Wigge P.A., Saibo N.J.M., Jaeger K.E.
Proc. Natl. Acad. Sci. U.S.A. 2022  119(26)  e2122582119
The evening complex integrates photoperiod signals to control flowering in rice.
Pearce S.
Proc. Natl. Acad. Sci. U.S.A. 2022  119(29)  e2208745119
Plants change their clocks to flower at the right time.
Wei H., Wang X., He Y., Xu H., Wang L.
EMBO J. 2021  40(3)  e105086
Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis.
Matsuzaki J., Kawahara Y., Izawa T.
Plant Cell 2015  27(3)  633-48
Punctual Transcriptional Regulation by the Rice Circadian Clock under Fluctuating Field Conditions.
Suzuki K., Aoki N., Matsumura H., Okamura M., Ohsugi R., Shimono H.
Plant Cell Environ. 2014   
Cooling water before panicle initiation increases chilling-induced male sterility and disables chilling-induced expression of genes encoding OsFKBP65 and heat shock proteins in rice spikelets.
Murakami M, Tago Y, Yamashino T, Mizuno T.
Plant Cell Physiol. 2007  48(1)  110-21
Comparative Overviews of Clock-Associated Genes of Arabidopsis thaliana and Oryza sativa.
Onai,K. and Ishiura,M.
Genes Cells 2005  10(10)  963-972
PHYTOCLOCK 1 encoding a novel GARP protein essential for the Arabidopsis circadian clock.
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to salt stress( GO:0009651 )
rhythmic process( GO:0048511 )
transcription factor activity( GO:0003700 )
DNA binding( GO:0003677 )
cytoplasm( GO:0005737 )
response to abscisic acid stimulus( GO:0009737 )
response to cold( GO:0009409 )
photoperiodism, flowering( GO:0048573 )
regulation of timing of transition from vegetative to reproductive phase( GO:0048510 )
vegetative to reproductive phase transition( GO:0010228 )
photoperiodism( GO:0009648 )
circadian rhythm( GO:0007623 )
chromatin binding( GO:0003682 )
nucleus( GO:0005634 )
regulation of transcription, DNA-dependent( GO:0006355 )
Trait Ontology grain yield( TO:0000396 )
days to heading( TO:0000137 )
flowering time( TO:0002616 )
photoperiod sensitivity( TO:0000229 )
cold tolerance( TO:0000303 )
abscisic acid sensitivity( TO:0000615 )
leaf rolling tolerance( TO:0002662 )
hydrogen peroxide content( TO:0000605 )
salt tolerance( TO:0006001 )
Plant Ontology leaf( PO:0025034 )
Related Strains
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Phenotype images
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Last updated
Oct 4, 2023

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