|
Basic Information
|
|
CGSNL Gene Symbol
|
NCED3
|
|
Gene Symbol Synonym
|
OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b
|
|
CGSNL Gene Name
|
9-CIS-EPOXYCAROTENOID DIOXYGENASE 3
|
|
Gene Name Synonym
|
9-cis-epoxycarotenoid dioxygenase 3
|
|
Protein Name
|
9-CIS-EPOXYCAROTENOID DIOXYGENASE 3
|
|
Allele
|
osnced4
|
|
Chromosome No.
|
7
|
|
Explanation
|
AP005632. AY838900. OsNCED4 in Welsch et al. 2008, Xu et al. 2013, Liang et al. 2014, Teng et al. 2014, Xiong et al. 2014, Du et al. 2015, Liu et al. 2016, Zhao et al. 2016, Hong et al. 2016, Zong et al. 2016, He et al. 2018, Fu et al. 2018, Zhang et al. 2018, Hwang et al., 2018, Gong et al. 2019, Kim et al. 2019, Liang et al. 2019, Liu et al. 2019, Cao et al. 2020, Suriyasak et al. 2020, Santosh et al. 2021, Li et al. 2021, Wang et al. 2021, Zhou et al. 2022, Li et al. 2022, Wen et al. 2022, Shi et al. 2020, Li et al. 2023, Long et al. 2023, Liu et al. 2023,, Xie et al. 2024, Wang et al. 2024, Wang et al. 2025. an ABA biosynthesis gene. OsNECD2 in Du et al. 2015, Dong et al. 2021. OsNCED2b in Dai et al. 2024. GO:1902584: positive regulation of response to water deprivation. TO:0000949: seedling growth and development trait. GO:0090351: seedling development.
|
|
Trait Class
|
Biochemical character
Vegetative organ - Leaf
Vegetative organ - Culm
Seed - Physiological traits - Dormancy
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
|
|
Expression
|
|
|
Sequence/Locus
|
|
cDNA Accession No.
|
AK119780
|
|
MSU ID
|
LOC_Os07g05940.1
|
|
RAP ID
|
Os07g0154100
|
|
Links
|
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
|
INSD Accession List
(Test version)
|
Link to INSD Accession List
|
|
Map
|
|
Locate(cM)
|
|
|
Link map
|
Classical linkage map
|
|
References
|
|
Wang B., Luo Y., Zhong B., Xu H., Wang F., Li W., Lin M., Chen J., Chen L., Liang M., Dai X.
Sci Rep 2025 15(1) 6730
The abscisic acid signaling negative regulator OsPP2C68 confers drought and salinity tolerance to rice.
|
|
Xie Z., Jin L., Sun Y., Zhan C., Tang S., Qin T., Liu N., Huang J.
Plant Commun 2024 5(3) 100782
OsNAC120 balances plant growth and drought tolerance by integrating GA and ABA signaling in rice.
|
|
Dai H., Ai H., Wang Y., Shi J., Ren L., Li J., Tao Y., Xu Z., Zheng J.
Int J Mol Sci 2024 25(19)
Molecular Characteristics and Expression Patterns of Carotenoid Cleavage Oxygenase Family Genes in Rice (<i>Oryza sativa</i> L.).
|
|
Ge Y., Chen G., Cheng X., Li C., Tian Y., Chi W., Li J., Dai Z., Wang C., Duan E., Liu Y., Sun Z., Li J., Wang B., Xu D., Sun X., Zhang H., Zhang W., Wang C., Wan J.
Plant Biotechnol. J. 2024
The superior allele LEA12OR in wild rice enhances salt tolerance and yield.
|
|
Wang H., Ye T., Guo Z., Yao Y., Tu H., Wang P., Zhang Y., Wang Y., Li X., Li B., Xiong H., Lai X., Xiong L.
Nat Commun 2024 15(1) 2514
A double-stranded RNA binding protein enhances drought resistance via protein phase separation in rice.
|
|
Li Q., Zhai W., Wei J., Jia Y.
Front Genet 2023 14 1111318
Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.
|
|
Liu J., Shen L., Guo L., Zhang G., Gao Z., Zhu L., Hu J., Dong G., Ren D., Zhang Q., Li Q., Zeng D., Yan C., Qian Q.
Rice (N Y) 2023 16(1) 47
OsSTS, a Novel Allele of Mitogen-Activated Protein Kinase Kinase 4 (OsMKK4), Controls grain size and salt tolerance in Rice.
|
|
Long Q., Qiu S., Man J., Ren D., Xu N., Luo R.
Rice (N Y) 2023 16(1) 35
OsAAI1 Increases Rice Yield and drought tolerance Dependent on ABA-Mediated Regulatory and ROS Scavenging Pathway.
|
|
Taniguchi S., Takeda A., Kiryu M., Gomi K.
Int J Mol Sci 2023 24(2)
Jasmonic Acid-Induced β-Cyclocitral Confers Resistance to Bacterial Blight and Negatively Affects Abscisic Acid Biosynthesis in Rice.
|
|
Wen D., Bao L., Huang X., Qian X., Chen E., Shen B.
Int J Mol Sci 2022 23(18)
<i>OsABT</i> Is Involved in Abscisic Acid Signaling Pathway and salt tolerance of Roots at the Rice Seedling Stage.
|
|
Zhou Z., Fan J., Zhang J., Yang Y., Zhang Y., Zan X., Li X., Wan J., Gao X., Chen R., Huang Z., Xu Z., Li L.
Plants (Basel) 2022 11(13)
<i>OsMLP423</i> Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.
|
|
Li J., Zhao T., Chen L., Chen H., Luo D., Chen C., Miao Y., Liu D.
BMC Plant Biol. 2022 22(1) 368
Artemisia argyi allelopathy: a generalist compromises hormone balance, element absorption, and photosynthesis of receptor plants.
|
|
Li X., Yu B., Wu Q., Min Q., Zeng R., Xie Z., Huang J.
PLoS Genet. 2021 17(8) e1009699
OsMADS23 phosphorylated by SAPK9 confers drought and salt tolerance by regulating ABA biosynthesis in rice.
|
|
Dong J., Zhou L., Feng A., Zhang S., Fu H., Chen L., Zhao J., Yang T., Yang W., Ma Y., Wang J., Zhu X., Liu Q., Liu B.
Rice (N Y) 2021 14(1) 51
The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice.
|
|
Wang X., Ren P., Ji L., Zhu B., Xie G.
Planta 2021 255(1) 6
OsVDE, a xanthophyll cycle key enzyme, mediates abscisic acid biosynthesis and negatively regulates salinity tolerance in rice.
|
|
Kim S., Park S.I., Kwon H., Cho M.H., Kim B.G., Chung J.H., Nam M.H., Song J.S., Kim K.H., Yoon I.S.
Front Plant Sci 2021 12 797940
The Rice Abscisic Acid-Responsive RING Finger E3 ligase OsRF1 Targets OsPP2C09 for Degradation and Confers Drought and Salinity Tolerance in Rice.
|
|
Santosh Kumar VV., Yadav S.K., Verma R.K., Shrivastava S., Ghimire O., Pushkar S., Rao M.V., Senthil Kumar T., Chinnusamy V.
J. Exp. Bot. 2021 72(4) 1411-1431
The abscisic acid receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms.
|
|
Suriyasak C., Oyama Y., Ishida T., Mashiguchi K., Yamaguchi S., Hamaoka N., Iwaya-Inoue M., Ishibashi Y.
Sci Rep 2020 10(1) 17378
Mechanism of delayed seed germination caused by high temperature during grain filling in rice (Oryza sativa L.).
|
|
Shi Y., Chang Y.L., Wu H.T., Shalmani A., Liu W.T., Li W.Q., Xu J.W., Chen K.M.
Plant Cell Rep. 2020 39(12) 1767-1784
OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice.
|
|
Cao X., Wu L., Wu M., Zhu C., Jin Q., Zhang J.
BMC Plant Biol. 2020 20(1) 198
Abscisic acid mediated proline biosynthesis and antioxidant ability in roots of two different rice genotypes under hypoxic stress.
|
|
Liang S., Xiong W., Yin C., Xie X., Jin Y.J., Zhang S., Yang B., Ye G., Chen S., Luan W.J.
Front Plant Sci 2019 10 1088
Overexpression of <i>OsARD1</i> Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.
|
|
Gong P., Luo Y., Huang F., Chen Y., Zhao C., Wu X., Li K., Yang X., Cheng F., Xiang X., Wu C., Pan G.
Plant Mol. Biol. 2019 100(1-2) 133-149
Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.
|
|
Kim T., Kang K., Kim S.H., An G., Paek N.C.
Int J Mol Sci 2019 20(18)
OsWRKY5 Promotes Rice leaf senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.
|
|
Jiang D., Zhou L., Chen W., Ye N., Xia J., Zhuang C.
Rice (N Y) 2019 12(1) 76
Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.
|
|
Liu J., Sun X., Liao W., Zhang J., Liang J., Xu W.
Rice (N Y) 2019 12(1) 82
Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.
|
|
Hwang S.G., Lee C.Y., Tseng C.S.
Botanical Studies 2018 59(1) 2
Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.
|
|
Zhang D., Wang Y., Shen J., Yin J., Li D., Gao Y., Xu W., Liang J.
Rice (N Y) 2018 11(1) 45
OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.
|
|
Yuenyong W., Chinpongpanich A., Comai L., Chadchawan S., Buaboocha T.
BMC Plant Biol. 2018 18(1) 335
Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.
|
|
He Y., Li L., Zhang Z., Wu J.L.
Int J Mol Sci 2018 19(1)
Identification and Comparative Analysis of Premature Senescence Leaf Mutants in Rice (Oryza sativa L.).
|
|
Fu J., Wu H., Ma S., Xiang D., Liu R., Xiong L.
Front Plant Sci 2017 8 2108
OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.
|
|
Zong W., Tang N., Yang J., Peng L., Ma S., Xu Y., Li G., Xiong L.
Plant Physiol. 2016 171(4) 2810-25
Feedback Regulation of ABA Signaling and Biosynthesis by a bZIP Transcription Factor Targets Drought-Resistance-Related Genes.
|
|
Hong Y., Zhang H., Huang L., Li D., Song F.
Front Plant Sci 2016 7 4
Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and salt tolerance in Rice.
|
|
Liu J., Zhang C., Wei C., Liu X., Wang M., Yu F., Xie Q., Tu J.
Plant Physiol. 2016 170(1) 429-43
The RING Finger Ubiquitin E3 Ligase OsHTAS Enhances heat tolerance by Promoting H2O2-Induced Stomatal Closure in Rice.
|
|
Zhao J., Li M., Gu D., Liu X., Zhang J., Wu K., Zhang X., Teixeira da Silva JA., Duan J.
Biochem. Biophys. Res. Commun. 2016 470(2) 439-44
Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.
|
|
Du W., Cheng J., Cheng Y., Wang L., He Y., Wang Z., Zhang H.
Plant Biol (Stuttg) 2015
Physiological characteristics and related gene expression of after-ripening on seed dormancy release in rice.
|
|
Luo C., Guo C., Wang W., Wang L., Chen L.
Plant Cell Rep. 2014 33(2) 323-36
Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice.
|
|
Du H., Chang Y., Huang F., Xiong L.
J Integr Plant Biol 2014
gid1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.
|
|
Teng K., Li J., Liu L., Han Y., Du Y., Zhang J., Sun H., Zhao Q.
Acta Physiologiae Plantarum 2014 36 2219-2227
Exogenous ABA induces drought tolerance in upland rice: The role of chloroplast and ABA biosynthesis-related gene expression on photosystem II during PEG stress
|
|
Liang C., Wang Y., Zhu Y., Tang J., Hu B., Liu L., Ou S., Wu H., Sun X., Chu J., Chu C.
Proc. Natl. Acad. Sci. U.S.A. 2014 111(27) 10013-8
OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice.
|
|
Xiong H., Li J., Liu P., Duan J., Zhao Y., Guo X., Li Y., Zhang H., Ali J., Li Z.
PLoS ONE 2014 9(3) e92913
Overexpression of OsMYB48-1, a Novel MYB-Related Transcription Factor, Enhances Drought and Salinity Tolerance in Rice.
|
|
Bang S.W., Park S.H., Jeong J.S., Kim Y.S., Jung H., Ha S.H., Kim J.K.
Planta 2013 237(1) 211-24
Characterization of the stress-inducible OsNCED3 promoter in different transgenic rice organs and over three homozygous generations.
|
|
Xu J., Audenaert K., Hofte M., De Vleesschauwer D.
PLoS ONE 2013 8(6) e67413
Abscisic Acid Promotes Susceptibility to the Rice Leaf Blight Pathogen Xanthomonas oryzae pv oryzae by Suppressing Salicylic Acid-Mediated Defenses.
|
|
Fukumoto T., Kano A., Ohtani K., Inoue M., Yoshihara A., Izumori K., Tajima S., Shigematsu Y., Tanaka K., Ohkouchi T., Ishida Y., Nishizawa Y., Tada Y., Ichimura K., Gomi K., Yoo S.D., Sheen J., Akimitsu K.
Planta 2013 237(5) 1379-91
Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L.
|
|
Liu D., Chen X., Liu J., Ye J., Guo Z.
J. Exp. Bot. 2012 63 3899-3912
The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance.
|
|
Tao Z., Kou Y., Liu H., Li X., Xiao J., Wang S.
J. Exp. Bot. 2011 62(14) 4863-74
OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice.
|
|
Ji X. , Dong B. , Shiran B. , Talbot M.J. , Edlington J.E. , Hughes T. , White R.G. , Gubler F. , Dolferus R.
Plant Physiol. 2011 156(2) 647-62
Control of abscisic Acid catabolism and abscisic Acid homeostasis is important for reproductive stage stress tolerance in cereals.
|
|
Mahmoud W Yaish, Ashraf El-Kereamy, Zhu T., Perrin H Beatty, Allen G Good, Yong-Mei Bi, Steven J Rothstein
PLoS Genet. 2010 6(9) e1001098
The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice.
|
|
Zhu G,Ye N,Zhang J
Plant Cell Physiol. 2009 50 644-51
Glucose-induced delay of seed germination in rice is mediated by the suppression of ABA catabolism rather than an enhancement of ABA biosynthesis.
|
|
Welsch,R., Wust,F., Bar,C., Al-Babili,S. and Beyer,P.
Plant Physiol. 2008 147(1) 367-380
A third phytoene synthase is devoted to abiotic stress-induced abscisic acid formation in rice and defines functional diversification of phytoene synthase genes
|
|
Saika,H., Okamoto,M., Miyoshi,K., Kushiro,T., Shinoda,S., Jikumaru,Y., Fujimoto,M., Arikawa,T., Takahashi,H., Ando,M., Arimura,S., Miyao,A., Hirochika,H., Kamiya,Y., Tsutsumi,N., Nambara,E. and Nakazono,M.
Plant Cell Physiol. 2007 48(2) 287-298
Ethylene Promotes Submergence-Induced Expression of OsABA8ox1, a Gene that Encodes ABA 8'-Hydroxylase in Rice.
|
|
Oliver SN,Dennis ES,Dolferus R
Plant Cell Physiol. 2007 48 1319-30
ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice.
|
|
Bao-Cai Tan, Leina M Joseph, Wen-Tao Deng, Liu L., Qin-Bao Li, Cline K., Donald R McCarty
Plant J. 2003 35(1) 44-56
Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family.
|
|
DB Reference
|
|
Gramene ID
|
-
|
|
Ontologies
|
|
Gene Ontology
|
response to cold( GO:0009409 )
response to water deprivation( GO:0009414 )
response to flooding( GO:0009413 )
chloroplast( GO:0009507 )
regulation of seed germination( GO:0010029 )
response to glucose stimulus( GO:0009749 )
response to jasmonic acid stimulus( GO:0009753 )
response to other organism( GO:0051707 )
response to heat( GO:0009408 )
seed germination( GO:0009845 )
response to hypoxia( GO:0001666 )
9-cis-epoxycarotenoid dioxygenase activity( GO:0045549 )
abscisic acid biosynthetic process( GO:0009688 )
response to abscisic acid stimulus( GO:0009737 )
defense response to bacterium( GO:0042742 )
response to salt stress( GO:0009651 )
|
|
Trait Ontology
|
drought tolerance( TO:0000276 )
salt tolerance( TO:0006001 )
abscisic acid content( TO:0002667 )
bacterial blight disease resistance( TO:0000175 )
abscisic acid sensitivity( TO:0000615 )
oxygen sensitivity( TO:0000015 )
heat tolerance( TO:0000259 )
jasmonic acid sensitivity( TO:0000172 )
leaf shape( TO:0000492 )
plant height( TO:0000207 )
flooding related trait( TO:0000114 )
cold tolerance( TO:0000303 )
|
|
Plant Ontology
|
0 seed germination stage( PO:0007057 )
seed imbibition stage( PO:0007022 )
seed( PO:0009010 )
seedling( PO:0008037 )
shoot system( PO:0009006 )
flowering stage( PO:0007616 )
seed maturation stage( PO:0007632 )
|
|
Related Strains
|
|
-
|
|
Phenotype images
|
|
-
|
|
Last updated
|
|
Jun 26, 2025
|
Update info.