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Detail of Gene

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Basic Information
CGSNL Gene Symbol NCED2
Gene Symbol Synonym OSNCED2, OsNCED2, OsNCED5, NCED5
Gene Name Synonym 9-cis-epoxycarotenoid dioxygenase 2
Chromosome No. 12
Explanation AL731885. AY838901. OsNCED5 in Welsch et al. 2008, Teng et al. 2014, Xiong et al. 2014, Du et al. 2015, Zhao et al. 2016, Hong et al. 2016, Zhang et al. 2018, Liu et al. 2018, Liu et al. 2019, Kim et al. 2019, Liang et al. 2019, Cao et al. 2020, Suriyasak et al. 2020, Yuan et al. 2021, Verma et al. 2019, Huang et al. 2021, Santosh et al. 2021, Yang et al. 2021, Wang et al. 2021, He et al. 2022, Long et al. 2023. an ABA biosynthesis gene.
Trait Class Biochemical character
Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
cDNA Accession No. AK107649
MSU ID LOC_Os12g42280.1
RAP ID Os12g0617400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Long Q., Qiu S., Man J., Ren D., Xu N., Luo R.
Rice (N Y) 2023  16(1)  35
OsAAI1 Increases Rice Yield and drought tolerance Dependent on ABA-Mediated Regulatory and ROS Scavenging Pathway.
Lu Q., Luo X., Yang X., Zhou T., Zhang Y., Lan Y., Zhang D., Zheng L., Li Y., Li L., Zhang S., Liu Y.
Front Plant Sci 2023  14  1122978
CRISPR/Cas9-mediated gene editing of <i>vacuolar ATPase subunit d</i> mediates phytohormone biosynthesis and virus resistance in rice.
Taniguchi S., Takeda A., Kiryu M., Gomi K.
Int J Mol Sci 2023  24(2) 
Jasmonic Acid-Induced &#x3b2;-Cyclocitral Confers Resistance to Bacterial Blight and Negatively Affects Abscisic Acid Biosynthesis in Rice.
Yang B., Chen M., Zhan C., Liu K., Cheng Y., Xie T., Zhu P., He Y., Zeng P., Tang H., Tsugama D., Chen S., Zhang H., Cheng J.
J. Exp. Bot. 2022   
Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via GWAS.
He Y., Chen S., Liu K., Chen Y., Cheng Y., Zeng P., Zhu P., Xie T., Chen S., Zhang H., Cheng J.
Plant Biotechnol. J. 2022  20(7)  1346-1362
OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.
Santosh Kumar VV., Yadav S.K., Verma R.K., Shrivastava S., Ghimire O., Pushkar S., Rao M.V., Senthil Kumar T., Chinnusamy V.
J. Exp. Bot. 2021  72(4)  1411-1431
The abscisic acid receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms.
Wang X., Ren P., Ji L., Zhu B., Xie G.
Planta 2021  255(1)  6
OsVDE, a xanthophyll cycle key enzyme, mediates abscisic acid biosynthesis and negatively regulates salinity tolerance in rice.
Huang S., Hu L., Zhang S., Zhang M., Jiang W., Wu T., Du X.
Int J Mol Sci 2021  22(16) 
Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance.
Yuan Z., Fan K., Wang Y., Tian L., Zhang C., Sun W., He H., Yu S.
Plant Physiol. 2021   
OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances.
Suriyasak C., Oyama Y., Ishida T., Mashiguchi K., Yamaguchi S., Hamaoka N., Iwaya-Inoue M., Ishibashi Y.
Sci Rep 2020  10(1)  17378
Mechanism of delayed seed germination caused by high temperature during grain filling in rice (Oryza sativa L.).
Cao X., Wu L., Wu M., Zhu C., Jin Q., Zhang J.
BMC Plant Biol. 2020  20(1)  198
Abscisic acid mediated proline biosynthesis and antioxidant ability in roots of two different rice genotypes under hypoxic stress.
Liu C., Schläppi MR., Mao B., Wang W., Wang A., Chu C.
Plant Biotechnol. J. 2019   
The bZIP73 transcription factor controls rice cold tolerance at the reproductive stage.
Liang S., Xiong W., Yin C., Xie X., Jin Y.J., Zhang S., Yang B., Ye G., Chen S., Luan W.J.
Front Plant Sci 2019  10  1088
Overexpression of <i>OsARD1</i> Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.
Kim T., Kang K., Kim S.H., An G., Paek N.C.
Int J Mol Sci 2019  20(18) 
OsWRKY5 Promotes Rice leaf senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.
Verma R.K., Santosh Kumar VV., Yadav S.K., Pushkar S., Rao M.V., Chinnusamy V.
Front Plant Sci 2019  10  1488
Overexpression of ABA Receptor <i>PYL10</i> Gene Confers Drought and Cold Tolerance to Indica Rice.
Zhang D., Wang Y., Shen J., Yin J., Li D., Gao Y., Xu W., Liang J.
Rice (N Y) 2018  11(1)  45
OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.
Liu C., Ou S., Mao B., Tang J., Wang W., Wang H., Cao S., Schläppi MR., Zhao B., Xiao G., Wang X., Chu C.
Nat Commun 2018  9(1)  3302
Early selection of bZIP73 facilitated adaptation of japonica rice to cold climates.
Zhao J., Li M., Gu D., Liu X., Zhang J., Wu K., Zhang X., Teixeira da Silva JA., Duan J.
Biochem. Biophys. Res. Commun. 2016  470(2)  439-44
Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.
Hong Y., Zhang H., Huang L., Li D., Song F.
Front Plant Sci 2016  7  4
Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and salt tolerance in Rice.
Teng K., Li J., Liu L., Han Y., Du Y., Zhang J., Sun H., Zhao Q.
Acta Physiologiae Plantarum 2014  36  2219-2227
Exogenous ABA induces drought tolerance in upland rice: The role of chloroplast and ABA biosynthesis-related gene expression on photosystem II during PEG stress
Du H., Chang Y., Huang F., Xiong L.
J Integr Plant Biol 2014   
gid1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.
Xiong H., Li J., Liu P., Duan J., Zhao Y., Guo X., Li Y., Zhang H., Ali J., Li Z.
PLoS ONE 2014  9(3)  e92913
Overexpression of OsMYB48-1, a Novel MYB-Related Transcription Factor, Enhances Drought and Salinity Tolerance in Rice.
Fukumoto T., Kano A., Ohtani K., Inoue M., Yoshihara A., Izumori K., Tajima S., Shigematsu Y., Tanaka K., Ohkouchi T., Ishida Y., Nishizawa Y., Tada Y., Ichimura K., Gomi K., Yoo S.D., Sheen J., Akimitsu K.
Planta 2013  237(5)  1379-91
Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L.
Ji X. , Dong B. , Shiran B. , Talbot M.J. , Edlington J.E. , Hughes T. , White R.G. , Gubler F. , Dolferus R.
Plant Physiol. 2011  156(2)  647-62
Control of abscisic Acid catabolism and abscisic Acid homeostasis is important for reproductive stage stress tolerance in cereals.
Zhu G,Ye N,Zhang J
Plant Cell Physiol. 2009  50  644-51
Glucose-induced delay of seed germination in rice is mediated by the suppression of ABA catabolism rather than an enhancement of ABA biosynthesis.
Welsch,R., Wust,F., Bar,C., Al-Babili,S. and Beyer,P.
Plant Physiol. 2008  147(1)  367-380
A third phytoene synthase is devoted to abiotic stress-induced abscisic acid formation in rice and defines functional diversification of phytoene synthase genes
Oliver SN,Dennis ES,Dolferus R
Plant Cell Physiol. 2007  48  1319-30
ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice.
Saika,H., Okamoto,M., Miyoshi,K., Kushiro,T., Shinoda,S., Jikumaru,Y., Fujimoto,M., Arikawa,T., Takahashi,H., Ando,M., Arimura,S., Miyao,A., Hirochika,H., Kamiya,Y., Tsutsumi,N., Nambara,E. and Nakazono,M.
Plant Cell Physiol. 2007  48(2)  287-298
Ethylene Promotes Submergence-Induced Expression of OsABA8ox1, a Gene that Encodes ABA 8'-Hydroxylase in Rice.
Bao-Cai Tan, Leina M Joseph, Wen-Tao Deng, Liu L., Qin-Bao Li, Cline K., Donald R McCarty
Plant J. 2003  35(1)  44-56
Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family.
TextPresso Search Search textpresso for NCED2 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to abscisic acid stimulus( GO:0009737 )
response to jasmonic acid stimulus( GO:0009753 )
abscisic acid biosynthetic process( GO:0009688 )
9-cis-epoxycarotenoid dioxygenase activity( GO:0045549 )
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen( GO:0016702 )
seed germination( GO:0009845 )
response to cold( GO:0009409 )
response to hypoxia( GO:0001666 )
Trait Ontology cold tolerance( TO:0000303 )
abscisic acid content( TO:0002667 )
drought tolerance( TO:0000276 )
salt tolerance( TO:0006001 )
oxygen sensitivity( TO:0000015 )
jasmonic acid sensitivity( TO:0000172 )
abscisic acid sensitivity( TO:0000615 )
Plant Ontology 0 seed germination stage( PO:0007057 )
Related Strains
Phenotype images
Last updated
Nov 20, 2023