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Basic Information
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CGSNL Gene Symbol
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HD3A
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Gene Symbol Synonym
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Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a
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CGSNL Gene Name
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HEADING DATE 3A
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Gene Name Synonym
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heading date 3A, Heading date-3a, Heading date (QTL)-3(t), Flowering locus T, FT-like gene 2
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Protein Name
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HD3A PROTEIN
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Allele
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hd3a, hd3a-1, hd3a-2, hd3a-3
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Chromosome No.
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6
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Explanation
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PEBP (Phosphatidylethanolamine-binding-protein) Gene Family. PO:0006318; floret (sense Poaceae. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. ortholog of Arabidopsis FT. Q93WI9. AB052941, AB052942, AB052943, AB052944. JN594212-JN594326 (O.sativa and other wild rice species). AB062675. AB426880-AB426888 (O. sativa and other wild rice species). GU727015-GU727061 (wild rice species). KM043287-KM043383 (O.sativa and other wild rice species). GO:1901698: response to nitrogen compound. TO:0000794: axillary bud prominence. GO:1902347: response to strigolactone. TO:0000862: floral organ morphology trait.
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Trait Class
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Reproductive organ
Reproductive organ - Heading date
Character as QTL - Yield and productivity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AB052943
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MSU ID
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LOC_Os06g06320.1
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RAP ID
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Os06g0157700
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
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Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Colleoni P.E., van Es SW., Winkelmolen T., Immink R.G.H., van Esse GW.
J. Exp. Bot. 2024 75(14) 4195-4209
flowering time genes branching out.
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Zheng Q., Zhou Z., Li X., Lan Y., Huang R., Zhang S., Li H.
Int J Mol Sci 2024 25(19)
<i>Heading date 3a</i> Stimulates Tiller Bud Outgrowth in <i>Oryza sativa</i> L. through Strigolactone Signaling Pathway.
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Kim E.G., Jang Y.H., Park J.R., Wang X.H., Jan R., Farooq M., Asaf S., Asif S., Kim K.M.
Rice (N Y) 2024 17(1) 48
OsCKq1 Regulates heading date and grain weight in Rice in Response to Day Length.
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Kim Y.K.
Biosci. Biotechnol. Biochem. 2024 88(11) 1307-1315
Knockout of OsWOX13 moderately delays flowering in rice under natural long-day conditions.
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Lee S.J., Kim Y., Kang K., Yoon H., Kang J., Cho S.H., Paek N.C.
Plant Cell Environ. 2024 47(12) 4498-4515
rice CRYPTOCHROME-INTERACTING BASIC HELIX-LOOP-HELIX 1-LIKE interacts with OsCRY2 and promotes flowering by upregulating Early heading date 1.
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Yin Y., Yan Z., Guan J., Huo Y., Wang T., Li T., Cui Z., Ma W., Wang X., Chen W.
Plant Physiol. 2023 192(1) 205-221
Two interacting basic helix-loop-helix transcription factors control flowering time in rice.
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Zhang X., Feng Q., Miao J., Zhu J., Zhou C., Fan D., Lu Y., Tian Q., Wang Y., Zhan Q., Wang Z.Q., Wang A., Zhang L., Shangguan Y., Li W., Chen J., Weng Q., Huang T., Tang S., Si L., Huang X., Wang Z.X., Han B.
Plant Cell 2023
The WD40 domain-containing protein Ehd5 positively regulates flowering in rice (Oryza sativa).
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Gong F., Zhang K., Wen J., Yu S., Li W., Du G., Wu C., Zhu K., Xu Y.
Int J Mol Sci 2023 24(11)
Rice OsMRG702 and Its Partner OsMRGBP Control flowering time through H4 Acetylation.
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Fan X., Wang P., Qi F., Hu Y., Li S., Zhang J., Liang L., Zhang Z., Liu J., Xiong L., Xing Y.
J Genet Genomics 2023
The CCT transcriptional activator Ghd2 constantly delays the heading date by upregulating CO3 in rice.
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Mineri L., Cerise M., Giaume F., Vicentini G., Martignago D., Chiara M., Galbiati F., Spada A., Horner D., Fornara F., Brambilla V.
Plant J. 2023
Rice florigens control a common set of genes at the shoot apical meristem including the F-BOX BROADER tiller angle 1 that regulates tiller angle and spikelet development.
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Lin X., Huang Y., Rao Y., Ouyang L., Zhou D., Zhu C., Fu J., Chen C., Yin J., Bian J., He H., Zou G., Xu J.
BMC Plant Biol. 2022 22(1) 612
A base substitution in OsphyC disturbs its Interaction with OsphyB and affects flowering time and chlorophyll synthesis in rice.
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Molla K.A.
Plant Cell 2022 34(10) 3489-3490
Flowering time and photoperiod sensitivity in rice: Key players and their interactions identified.
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Shim Y., Lim C., Seong G., Choi Y., Kang K., Paek N.C.
Plant Cell Environ. 2022 45(8) 2446-2459
The AP2/ERF transcription factor LATE FLOWERING SEMI-DWARF suppresses long-day-dependent repression of flowering.
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Shin W.J., Nam A.H., Kim J.Y., Kwak J.S., Song J.T., Seo H.S.
Plant Sci. 2022 320 111278
Intronic long noncoding RNA, RICE FLOWERING ASSOCIATED (RIFLA), regulates OsMADS56-mediated flowering in rice.
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Zhao C., Zhu M., Guo Y., Sun J., Ma W., Wang X.
Plants (Basel) 2022 11(12)
Genomic Survey of <i>PEBP</i> Gene Family in Rice: Identification, Phylogenetic Analysis, and Expression Profiles in Organs and under Abiotic Stresses.
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Lu Y., Xu Y., Li N.
Rice (N Y) 2022 15(1) 11
Early Domestication History of Asian Rice Revealed by Mutations and Genome-Wide Analysis of Gene Genealogies.
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Cai Z., Zhang Y., Tang W., Chen X., Lin C., Liu Y., Ye Y., Wu W., Duan Y.
Front Plant Sci 2022 13 853042
LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.
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Lu S., Zhang N., Xu Y., Chen H., Huang J., Zou B.
Int J Mol Sci 2022 23(21)
Functional Conservation and Divergence of <i>mos1</i> That Controls Flowering Time and seed size in Rice and <i>Arabidopsis</i>.
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Xiang Y.H., Yu J.J., Liao B., Shan J.X., Ye W.W., Dong N.Q., Guo T., Kan Y., Zhang H., Yang Y.B., Li Y.C., Zhao H.Y., Yu H.X., Lu Z.Q., Lin H.X.
Mol Plant 2022
An alpha/beta hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.
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Qu L., Chu Y.J., Lin W.H., Xue H.W.
PLoS Genet. 2021 17(12) e1009905
A secretory Phospholipase D hydrolyzes phosphatidylcholine to suppress rice heading time.
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Cerise M., Giaume F., Galli M., Khahani B., Lucas J., Podico F., Tavakol E., Parcy F., Gallavotti A., Brambilla V., Fornara F.
New Phytol. 2021 229(1) 429-443
OsFD4 promotes the rice floral transition via florigen activation complex formation in the shoot apical meristem.
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Zhang S., Zhang Y., Li K., Yan M., Zhang J., Yu M., Tang S., Wang L., Qu H., Luo L., Xuan W., Xu G.
Curr. Biol. 2021 31(4) 671-683.e5
Nitrogen Mediates flowering time and Nitrogen Use Efficiency via Floral Regulators in Rice.
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Yoon H., Shim Y., Yoo S.C., Kang K., Paek N.C.
Int J Mol Sci 2021 22(3)
The Rice CHD3/Mi-2 Chromatin Remodeling Factor Rolled Fine Striped Promotes Flowering Independent of Photoperiod.
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Liang L., Zhang Z., Cheng N., Liu H., Song S., Hu Y., Zhou X., Zhang J., Xing Y.
Plant Cell Environ. 2021 44(3) 842-855
The transcriptional repressor OsPRR73 links circadian clock and photoperiod pathway to control heading date in rice.
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Sun C., Zhang K., Zhou Y., Xiang L., He C., Zhong C., Li K., Wang Q., Yang C., Wang Q., Chen C., Chen D., Wang Y., Liu C., Yang B., Wu H., Chen X., Li W., Wang J., Xu P., Wang P., Fang J., Chu C., Deng X.
Plant Biotechnol. J. 2021 19(8) 1644-1657
Dual function of clock component OsLHY sets critical day length for photoperiodic flowering in rice.
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Kim Y.J., Kwak J.S., Dae Hwan K., Song J.T., Seo H.S.
Plant Signal Behav 2021 16(7) 1913366
Mutation of the <i>OsGlyRS3</i> gene affects heading date in rice.
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Osnato M., Matias-Hernandez L., Aguilar-Jaramillo AE., Kater M.M., Pelaz S.
Plant Physiol. 2020 183(4) 1663-1680
Genes of the <i>RAV</i> Family Control Heading Date and Carpel Development in Rice.
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Geng Y., Zhang P., Liu Q., Wei Z., Riaz A., Chachar S., Gu X.
Plant Biotechnol. J. 2020 18(2) 325-327
Rice homolog of Sin3-associated polypeptide 30, OsSFL1, mediates histone deacetylation to regulate flowering time during short days.
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Xu Z., Chen Z., Wang R., Miao Y., Gao H., Tang S., Zhang H., Liu Q.
Molecular Breeding 2020 40(27)
Characterization and fine-mapping of qHd2-1, a minor quantitative locus that affects heading date under long-day conditions in rice (Oryza sativa L.)
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Cui Y., Cheng J., Ruan S., Qi P., Liu W., Bian H., Ye L., Zhang Y., Hu J., Dong G., Guo L., Zhang Y., Qian Q., Hu X.
J Integr Plant Biol 2020 62(12) 1839-1852
The heterochronic gene Oryza sativa LIKE HETEROCHROMATIN PROTEIN 1 modulates miR156b/c/i/e levels.
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Shen C., Liu H., Guan Z., Yan J., Zheng T., Yan W., Wu C., Zhang Q., Yin P., Xing Y.
Plant Cell 2020 32(11) 3469-3484
Structural Insight into DNA Recognition by CCT/NF-YB/YC Complexes in Plant Photoperiodic Flowering.
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Du K., Luo Q., Yin L., Wu J., Liu Y., Gan J., Dong A., Shen W.H.
Nat Commun 2020 11(1) 5717
OsChz1 acts as a histone chaperone in modulating chromatin organization and genome function in rice.
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Cai M., Chen S., Wu M., Zheng T., Zhou L., Li C., Zhang H., Wang J., Xu X., Chai J., Ren Y., Guo X., Zhang X., Lei C., Cheng Z., Wang J., Jiang L., Zhai H., Wang H., Zhu S., Wan J.
Plant Cell Rep. 2019 38(5) 521-532
Early heading 7 interacts with DTH8, and regulates flowering time in rice.
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Fang M., Zhou Z., Zhou X., Yang H., Li M., Li H.
PeerJ 2019 7 e6422
Overexpression of <i>OsFTL10</i> induces early flowering and improves drought tolerance in <i>Oryza sativa</i> L.
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Fang J., Zhang F., Wang H., Wang W., Zhao F., Li Z., Sun C., Chen F., Xu F., Chang S., Wu L., Bu Q., Wang P., Xie J., Chen F., Huang X., Zhang Y., Zhu X., Han B., Deng X., Chu C.
Proc. Natl. Acad. Sci. U.S.A. 2019 116(37) 18717-18722
<i>Ef-cd</i> locus shortens rice maturity duration without yield penalty.
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Cui Y., Zhu M., Xu Z., Xu Q.
Theor. Appl. Genet. 2019 132(6) 1887-1896
Assessment of the effect of ten heading time genes on reproductive transition and yield components in rice using a CRISPR/Cas9 system.
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Yang R., Li P., Mei H., Wang D., Sun J., Yang C., Hao L., Cao S., Chu C., Hu S., Song X., Cao X.
Mol Plant 2019
Fine-Tuning of miR528 Accumulation Modulates Flowering Time in Rice.
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Liu B., Liu Y., Wang B., Luo Q., Shi J., Gan J., Wen-Hui Shen, Yu Y., Dong A.
Nat Commun 2019 10(1) 2999
The transcription factor OsSUF4 interacts with SDG725 in promoting H3K36me3 establishment.
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Hong Y., Zhang Y., Sinumporn S., Yu N., Zhan X., Shen X., Chen D., Yu P., Wu W., Liu Q., Cao Z., Zhao C., Cheng S., Cao L.
Plant J. 2018
Premature leaf senescence 3, encoding a methyltransferase, is required for melatonin biosynthesis in rice.
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Jiang P., Wang S., Jiang H., Cheng B., Wu K., Ding Y.
Plant Physiol. 2018 176(4) 2761-2771
The COMPASS-Like Complex Promotes Flowering and Panicle Branching in Rice.
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Zhao Q., Feng Q., Lu H., Li Y., Wang A., Tian Q., Zhan Q., Lu Y., Zhang L., Huang T., Wang Y., Fan D., Zhao Y., Wang Z., Zhou C., Chen J., Zhu C., Li W., Weng Q., Xu Q., Wang Z.X., Wei X., Han B., Huang X.
Nat. Genet. 2018 50(2) 278-284
Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.
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Wu W., Zhang Y., Zhang M., Zhan X., Shen X., Yu P., Chen D., Liu Q., Sinumporn S., Hussain K., Cheng S., Cao L.
Biochem. Biophys. Res. Commun. 2018 495(1) 1349-1355
The RICE CONSTANS-like protein OsCOL15 suppresses flowering by promoting Ghd7 and repressing RID1.
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Wang W., Hu B., Yuan D., Liu Y., Che R., Hu Y., Ou S., Liu Y., Zhang Z., Wang H., Li H., Jiang Z., Zhang Z., Gao X., Qiu Y., Meng X., Liu Y., Bai Y., Liang Y., Wang Y., Zhang L., Li L., Sodmergen, Jing H., Li J., Chu C.
Plant Cell 2018 30(3) 638-651
Expression of the Nitrate Transporter Gene <i>OsNRT1.1A/OsNPF6.3</i> Confers High Yield and Early Maturation in Rice.
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Guo S., Dai S., Singh P.K., Wang H., Wang Y., Tan J.L.H., Wee W., Ito T.
Front Plant Sci 2018 9 555
A Membrane-Bound NAC-Like Transcription Factor OsNTL5 Represses the Flowering in <i>Oryza sativa</i>.
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Jiang P., Wang S., Zheng H., Li H., Zhang F., Su Y., Xu Z., Lin H., Qian Q., Ding Y.
New Phytol. 2018 219(1) 422-435
SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1.
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Kaneko-Suzuki M., Kurihara-Ishikawa R., Okushita-Terakawa C., Kojima C., Nagano-Fujiwara M., Ohki I., Tsuji H., Shimamoto K., Taoka K.I.
Plant Cell Physiol. 2018 59(3) 458-468
TFL1-Like Proteins in Rice Antagonize Rice FT-Like Protein in Inflorescence Development by Competition for Complex Formation with 14-3-3 and FD.
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He Q., Yang L., Hu W., Zhang J., Xing Y.
Sci Rep 2018 8(1) 14051
Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.
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Kim S.R., Torollo G., Yoon M.R., Kwak J., Lee C.K., Prahalada G.D., Choi I.R., Yeo U.S., Jeong O.Y., Jena K.K., Lee J.S.
Front Plant Sci 2018 9 1827
Loss-of-Function Alleles of <i>Heading date 1</i> (<i>Hd1</i>) Are Associated With Adaptation of Temperate <i>Japonica</i> Rice Plants to the Tropical Region.
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Zeng L., Liu X., Zhou Z., Li D., Zhao X., Zhu L., Luo Y., Hu S.
BMC Plant Biol. 2018 18(1) 157
Identification of a G2-like transcription factor, OsPHL3, functions as a negative regulator of flowering in rice by co-expression and reverse genetic analysis.
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Gong R., Cao H., Zhang J., Xie K., Wang D., Yu S.
Plant J. 2018 94(1) 32-47
Divergent functions of the GAGA-binding transcription factor family in rice.
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Song S., Wang G., Hu Y., Liu H., Bai X., Qin R., Xing Y.
J. Exp. Bot. 2018 69(18) 4283-4293
OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.
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Minh-Thu PT., Kim J.S., Chae S., Jun K.M., Lee G.S., Kim D.E., Cheong J.J., Song S.I., Nahm B.H., Kim Y.K.
Mol. Cells 2018 41(8) 781-798
A WUSCHEL Homeobox Transcription Factor, OsWOX13, Enhances Drought Tolerance and Triggers Early Flowering in Rice.
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Chen J.Y., Zhang H.W., Zhang H.L., Ying J.Z., Ma L.Y., Zhuang J.Y.
BMC Plant Biol. 2018 18(1) 112
Natural variation at qHd1 affects heading date acceleration at high temperatures with pleiotropism for yield traits in rice.
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Cho L.H., Yoon J., Wai A.H., An G.
Mol. Cells 2018 41(7) 665-675
<i>Histone Deacetylase 701 (HDT701)</i> Induces Flowering in Rice by Modulating Expression of <i>OsIDS1</i>.
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Wu Q., Liu X., Yin D., Yuan H., Xie Q., Zhao X., Li X., Zhu L., Li S., Li D.
BMC Plant Biol. 2017 17(1) 166
Constitutive expression of OsDof4, encoding a C2-C2 zinc finger transcription factor, confesses its distinct flowering effects under long- and short-day photoperiods in rice (Oryza sativa L.).
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Deng L., Li L., Zhang S., Shen J., Li S., Hu S., Peng Q., Xiao J., Wu C.
PLoS Genet. 2017 13(2) e1006642
Suppressor of RID1 (SID1) shares common targets with RID1 on florigen genes to initiate floral transition in rice.
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Wu W., Zheng X.M., Chen D., Zhang Y., Ma W., Zhang H., Sun L., Yang Z., Zhao C., Zhan X., Shen X., Yu P., Fu Y., Zhu S., Cao L., Cheng S.
Plant Sci. 2017 260 60-69
OsCOL16, encoding a CONSTANS-like protein, represses flowering by up-regulating Ghd7 expression in rice.
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Liu K., Yu Y., Dong A., Shen W.H.
New Phytol. 2017 215(2) 609-623
SET DOMAIN GROUP701 encodes a H3K4-methytransferase and regulates multiple key processes of rice plant development.
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Du A., Tian W., Wei M., Yan W., He H., Zhou D., Huang X., Li S., Ouyang X.
Mol Plant 2017 10(7) 948-961
The DTH8-Hd1 module Mediates Day-Length-Dependent Regulation of Rice Flowering.
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Zhu S., Wang J., Cai M., Zhang H., Wu F., Xu Y., Li C., Cheng Z., Zhang X., Guo X., Sheng P., Wu M., Wang J., Lei C., Wang J., Zhao Z., Wu C., Wang H., Wan J.
J. Exp. Bot. 2017 68(3) 553-568
The OsHAPL1-DTH8-Hd1 complex functions as the transcription regulator to repress heading date in rice.
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Goretti D., Martignago D., Landini M., Brambilla V., Gómez-Ariza J., Gnesutta N., Galbiati F., Collani S., Takagi H., Terauchi R., Mantovani R., Fornara F.
PLoS Genet. 2017 13(1) e1006530
Transcriptional and Post-transcriptional Mechanisms Limit HEADING DATE 1 (Hd1) Function to Adapt Rice to High Latitudes.
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Brambilla V., Martignago D., Goretti D., Cerise M., Somssich M., de Rosa M., Galbiati F., Shrestha R., Lazzaro F., Simon R., Fornara F.
Plant Cell 2017 29(11) 2801-2816
Antagonistic Transcription Factor Complexes Modulate the Floral Transition in Rice.
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Tan J., Wu F., Wan J.
Plant Signal Behav 2017 12(1) e1267893
Flowering time regulation by the CONSTANS-like gene OsCOL10.
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Li C., Zhu S., Zhang H., Chen L., Cai M., Wang J., Chai J., Wu F., Cheng Z., Guo X., Zhang X., Wan J.
Biochem. Biophys. Res. Commun. 2017 486(3) 720-725
OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.
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Bai B., Zhao J., Li Y., Zhang F., Zhou J., Chen F., Xie X.
Plant Sci. 2016 247 25-34
OsBBX14 delays heading date by repressing florigen gene expression under long and short-day conditions in rice.
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Sun X., Zhang Z., Wu J., Cui X., Feng D., Wang K., Xu M., Zhou L., Han X., Gu X., Lu T.
PLoS Genet. 2016 12(3) e1005927
The Oryza sativa Regulator HDR1 Associates with the Kinase OsK4 to Control Photoperiodic Flowering.
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Li S., Yue W., Wang M., Qiu W., Zhou L., Shou H.
Front Plant Sci 2016 7 465
Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.
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Du Y., He W., Deng C., Chen X., Gou L., Zhu F., Guo W., Zhang J., Wang T.
PLoS ONE 2016 11(3) e0150458
Flowering-Related RING Protein 1 (FRRP1) Regulates flowering time and Yield Potential by Affecting histone H2B Monoubiquitination in Rice (Oryza Sativa).
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Tan J., Jin M., Wang J., Wu F., Sheng P., Cheng Z., Wang J., Zheng X., Chen L., Wang M., Zhu S., Guo X., Zhang X., Liu X., Wang C., Wang H., Wu C., Wan J.
Plant Cell Physiol. 2016 57(4) 798-812
OsCOL10, a CONSTANS-like Gene, Functions as a flowering time Repressor Downstream of Ghd7 in Rice.
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Cho L.H., Yoon J., Pasriga R., An G.
Plant Physiol. 2016 170(4) 2159-71
Homodimerization of Ehd1 Is Required to Induce Flowering in Rice.
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Huang X., Yang S., Gong J., Zhao Q., Feng Q., Zhan Q., Zhao Y., Li W., Cheng B., Xia J., Chen N., Huang T., Zhang L., Fan D., Chen J., Zhou C., Lu Y., Weng Q., Han B.
Nature 2016 537(7622) 629-633
Genomic architecture of heterosis for yield traits in rice.
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Liu H., Gu F., Dong S., Liu W., Wang H., Chen Z., Wang J.
Biochem. Biophys. Res. Commun. 2016 479(2) 173-178
CONSTANS-like 9 (COL9) delays the flowering time in Oryza sativa by repressing the Ehd1 pathway.
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Sheng P., Wu F., Tan J., Zhang H., Ma W., Chen L., Wang J., Wang J., Zhu S., Guo X., Wang J., Zhang X., Cheng Z., Bao Y., Wu C., Liu X., Wan J.
Plant Mol. Biol. 2016 92(1-2) 209-22
A CONSTANS-like transcriptional activator, OsCOL13, functions as a negative regulator of flowering downstream of OsphyB and upstream of Ehd1 in rice.
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Wang J., Wu F., Zhu S., Xu Y., Cheng Z., Wang J., Li C., Sheng P., Zhang H., Cai M., Guo X., Zhang X., Wang C., Wan J.
FEBS Lett. 2016
Overexpression of OsMYB1R1-VP64 fusion protein increases grain yield in rice by delaying flowering time.
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Jeong H.J., Yang J., Cho L.H., An G.
Plant Cell Rep. 2016 35(4) 905-20
OsVIL1 controls flowering time in rice by suppressing OsLF under short days and by inducing Ghd7 under long days.
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Kim S.K., Park H.Y., Jang Y.H., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.
Planta 2015
OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
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Zhang L., Li Q., Dong H., He Q., Liang L., Tan C., Han Z., Yao W., Li G., Zhao H., Xie W., Xing Y.
Sci Rep 2015 5 7663
Three CCT domain-containing genes were identified to regulate heading date by candidate gene-based association mapping and transformation in rice.
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Jin J., Shi J., Liu B., Liu Y., Huang Y., Yu Y., Dong A.
Plant Physiol. 2015
MRG702, a reader protein of H3K4me3 and H3K36me3, is involved in brassinosteroid-regulated growth and flowering time control in rice.
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Yang Y., Fu D., Zhu C., He Y., Zhang H., Liu T., Li X., Wu C.
Plant Cell 2015
The RING-Finger Ubiquitin Ligase HAF1 Mediates heading date 1 Degradation during Photoperiodic Flowering in Rice.
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Chen X., Lu S., Wang Y., Zhang X., Lv B., Luo L., Xi D., Shen J., Ma H., Ming F.
Plant J. 2015 82(2) 302-14
OsNAC2 encoding a NAC transcription factor that affects plant height through mediating the gibberellic acid pathway in rice.
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Tamaki S., Tsuji H., Matsumoto A., Fujita A., Shimatani Z., Terada R., Sakamoto T., Kurata T., Shimamoto K.
Proc. Natl. Acad. Sci. U.S.A. 2015 112(8) E901-10
FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice.
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Fan T., Li X., Yang W., Xia K., Ouyang J., Zhang M.
PLoS ONE 2015 10(5) e0125833
Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and shoot apical meristem Maintenance by Repressing Four OsHAM Transcription Factors.
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Su L., Shan J.X., Gao J.P., Lin H.X.
Mol Plant 2015
OsHAL3, a Blue Light responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.
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Gao H., Jin M., Zheng X.M., Chen J., Yuan D., Xin Y., Wang M., Huang D., Zhang Z., Zhou K., Sheng P., Ma J., Ma W., Deng H., Jiang L., Liu S., Wang H., Wu C., Yuan L., Wan J.
Proc. Natl. Acad. Sci. U.S.A. 2014
Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice.
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Cai Y., Chen X., Xie K., Xing Q., Wu Y., Li J., Du C., Sun Z., Guo Z.
PLoS ONE 2014 9(7) e102529
Dlf1, a WRKY transcription factor, is involved in the control of flowering time and plant height in rice.
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Thurber C.S., Reagon M., Olsen K.M., Jia Y., Caicedo A.L.
Am. J. Bot. 2014 101(10) 1737-47
The evolution of flowering strategies in US weedy rice.
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Cai Y., Vega-Sánchez ME., Park C.H., Bellizzi M., Guo Z., Wang G.L.
PLoS ONE 2014 9(1) e87258
RBS1, an RNA binding protein, interacts with Spin1 and is involved in flowering time control in rice.
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Wang J., Hu J., Qian Q., Xue H.W.
Mol Plant 2013 6(2) 514-27
LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF.
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Yang J., Lee S., Hang R., Kim S.R., Lee Y.S., Cao X., Amasino R., An G.
Plant J. 2013 73(4) 566-78
OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
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Tsuji H., Nakamura H., Taoka K., Shimamoto K.
Plant Cell Physiol. 2013 54(3) 385-97
Functional diversification of FD transcription factors in rice, components of florigen activation complexes.
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Koo B.H., Yoo S.C., Park J.W., Kwon C.T., Lee B.D., An G., Zhang Z., Li J., Li Z., Paek N.C.
Mol Plant 2013 6(6) 1877-88
Natural variation in OsPRR37 regulates heading date and contributes to rice cultivation at a wide range of latitudes.
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Gao H., Zheng X.M., Fei G., Chen J., Jin M., Ren Y., Wu W., Zhou K., Sheng P., Zhou F., Jiang L., Wang J., Zhang X., Guo X., Wang J.L., Cheng Z., Wu C., Wang H., Wan J.M.
PLoS Genet. 2013 9(2) e1003281
Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in rice.
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Ogiso-Tanaka E., Matsubara K., Yamamoto S., Nonoue Y., Wu J., Fujisawa H., Ishikubo H., Tanaka T., Ando T., Matsumoto T., Yano M.
PLoS ONE 2013 8(10) e75959
Natural Variation of the RICE FLOWERING LOCUS T 1 Contributes to flowering time Divergence in Rice.
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Liu D., Cai X.
J Integr Plant Biol 2013 55(9) 876-87
OsRRMh, a Spen-like Gene, Plays an Important Role during the Vegetative to Reproductive Transition in Rice.
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Wu W., Zheng X.M., Lu G., Zhong Z., Gao H., Chen L., Wu C., Wang H.J., Wang Q., Zhou K., Wang J.L., Wu F., Zhang X., Guo X., Cheng Z., Lei C., Lin Q., Jiang L., Wang H., Ge S., Wan J.
Proc. Natl. Acad. Sci. U.S.A. 2013 110(8) 2775-80
Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia.
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Taoka K., Ohki I., Tsuji H., Kojima C., Shimamoto K.
Trends Plant Sci. 2013 18(5) 287-94
Structure and function of florigen and the receptor complex.
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Yang Y., Peng Q., Chen G.X., Li X.H., Wu C.Y.
Mol Plant 2013 6(1) 202-15
OsELF3 is Involved in Circadian Clock Regulation for Promoting Flowering under Long-Day Conditions in Rice.
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Naeem M.a c, Freed S.b, Quan Z.G.a
Int J Agric Biol 2013 15 631-639
Molecular genetic studies of heading date gene OsMADS50 by using single segment substitution lines in Oryza sativa
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Liu J., Li W., Ning Y., Shirsekar G., Wang X., Dai L., Wang Z., Liu W., Wang G.L.
Plant Physiol. 2012 160(1) 28-37
The U-box E3 ligase SPL11/PUB13 Is a Convergence Point of Defense and Flowering Signaling in Plants.
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Liu S., Wang F., Gao L.J., Li J.H., Li R.B., Gao H.L., Deng G.F., Yang J.S., Luo X.J.
Breed. Sci. 2012 62(4) 310-9
Genetic analysis and fine mapping of LH1 and LH2, a set of complementary genes controlling late heading in rice (Oryza sativa L.).
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Kobayashi K., Yasuno N., Sato Y., Yoda M., Yamazaki R., Kimizu M., Yoshida H., Nagamura Y., Kyozuka J.
Plant Cell 2012 24(5) 1848-59
inflorescence meristem Identity in Rice Is Specified by Overlapping Functions of Three AP1/FUL-Like MADS Box Genes and PAP2, a SEPALLATA MADS Box Gene.
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Yekti Asih Purwestri, Ogaki Y., Tsuji H., Shimamoto K.
Indonesian Journal of Biotechnology 2012 17(2) 169-176
Functional Analysis of OsKANADI1, A Florigen Hd3a Interacting Protein in Rice (Oryza sativa L.)
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Huang,C.L., Hung,C.Y., Chiang,Y.C., Hwang,C.C., Hsu,T.W., Huang,C.C., Hung,K.H., Tsai,K.C., Wang,K.H., Osada,N., Schaal,B.A. and Chiang,T.Y.
Plant J. 2012 70(5) 769-782
Footprints of natural and artificial selection for photoperiod pathway genes in Oryza
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Sun C., Fang J., Zhao T., Xu B., Zhang F., Liu L., Tang J., Zhang G., Deng X., Chen F., Qian Q., Cao X., Chu C.
Plant Cell 2012 24(8) 3235-47
The histone methyltransferase SDG724 Mediates H3K36me2/3 Deposition at MADS50 and RFT1 and Promotes Flowering in Rice.
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Ishikawa R. , Aoki M. , Kurotani K. , Yokoi S. , Shinomura T. , Takano M. , Shimamoto K.
Mol. Genet. Genomics 2011 285(6) 461-70
Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice.
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Taoka K., Ohki I., Tsuji H., Furuita K., Hayashi K., Yanase T., Yamaguchi M., Nakashima C., Purwestri Y.A., Tamaki S., Ogaki Y., Shimada C., Nakagawa A., Kojima C., Shimamoto K.
Nature 2011 476(7360) 332-5
14-3-3 proteins act as intracellular receptors for rice Hd3a florigen.
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Izawa T. , Mihara M. , Suzuki Y. , Gupta M. , Itoh H. , Nagano A.J. , Motoyama R. , Sawada Y. , Yano M. , Hirai M.Y. , Makino A. , Nagamura Y.
Plant Cell 2011 23(5) 1741-55
Os-GIGANTEA Confers Robust Diurnal Rhythms on the Global Transcriptome of Rice in the Field.
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Ebana K,Shibaya T,Wu J,Matsubara K,Kanamori H,Yamane H,Yamanouchi U,Mizubayashi T,Kono I,Shomura A,Ito S,Ando T,Hori K,Matsumoto T,Yano M
Theor. Appl. Genet. 2011 122(6) 1199-210
Uncovering of major genetic factors generating naturally occurring variation in heading date among Asian rice cultivars.
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Osugi A., Itoh H., Ikeda-Kawakatsu K., Takano M., Izawa T.
Plant Physiol. 2011 157(3) 1128-37
Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice.
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Navarro C., Abelenda J.A., Cruz-Oró E., Cuéllar CA., Tamaki S., Silva J., Shimamoto K., Prat S.
Nature 2011 478(7367) 119-22
Control of flowering and storage organ formation in potato by FLOWERING LOCUS T.
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Li W., Han Y., Tao F., Chong K.
J. Plant Physiol. 2011 168(15) 1837-43
Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice.
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Takahashi Y., Shimamoto K.
Genes and Genetic Systems 2011 86 175-182
Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selectionduring domestication to diversify floweringtimes of cultivated rice
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Li C., Huang L., Xu C., Zhao Y., Zhou D.X.
PLoS ONE 2011 6(7) e21789
Altered levels of histone deacetylase OsHDT1 affect differential gene expression patterns in hybrid rice.
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Itoh H,Nonoue Y,Yano M,Izawa T
Nat Genet 2010 42(7) 635-8
A pair of floral regulators sets critical day length for Hd3a florigen expression in rice.
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Maas LF,McClung A,McCouch S
Theor. Appl. Genet. 2010 120(5) 895-908
Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice.
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Wei X., Xu J., Guo H., Jiang L., Chen S., Yu C., Zhou Z., Hu P., Zhai H., Wan J.
Plant Physiol. 2010 153(4) 1747-1758
DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously.
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Zheng,X.M. and Ge,S.
Mol. Ecol. 2010 19(12) 2439-2454
Ecological divergence in the presence of gene flow in two closely related Oryza species (Oryza rufipogon and O. nivara)
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Takahashi Y,Teshima KM,Yokoi S,Innan H,Shimamoto K
Proc. Natl. Acad. Sci. U.S.A. 2009 106 4555-60
Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice.
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Komiya R., Yokoi S., Shimamoto K.
Development 2009 136(20) 3443-50
A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.
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Purwestri YA,Ogaki Y,Tamaki S,Tsuji H,Shimamoto K
Plant Cell Physiol. 2009 50 429-38
The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a.
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Hagiwara,W.E., Uwatoko,N., Sasaki,A., Matsubara,K., Nagano,H., Onishi,K. and Sano,Y.
Mol. Ecol. 2009 18(7) 1537-49
Diversification in flowering time due to tandem FT-like gene duplication, generating novel Mendelian factors in wild and cultivated rice
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Park SJ,Kim SL,Lee S,Je BI,Piao HL,Park SH,Kim CM,Ryu CH,Park SH,Xuan YH,Colasanti J,An G,Han CD
Plant J. 2008 56 1018-29
Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod.
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Komiya R,Ikegami A,Tamaki S,Yokoi S,Shimamoto K
Development 2008 135 767-74
Hd3a and RFT1 are essential for flowering in rice.
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Vega-Sanchez ME,Zeng L,Chen S,Leung H,Wang GL
Plant Cell 2008 20 1456-69
SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice.
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Faure S, Higgins J, Turner A, Laurie DA.
Genetics 2007 176(1) 599-609
The FLOWERING LOCUS T-like gene family in barley (Hordeum vulgare).
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Hayama R,Agashe B,Luley E,King R,Coupland G
Plant Cell 2007 19 2988-3000
A circadian rhythm set by dusk determines the expression of FT homologs and the short-day photoperiodic flowering response in Pharbitis.
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Uga Y, Nonoue Y, Liang ZW, Lin HX, Yamamoto S, Yamanouchi U, Yano M.
Theor. Appl. Genet. 2007 114 1457-66
Accumulation of additive effects generates a strong photoperiod sensitivity in the extremely late-heading rice cultivar 'Nona Bokra'.
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Tamaki S, Matsuo S, Wong HL, Yokoi S, Shimamoto K.
Science 2007 316(5827) 1033 - 1036
Hd3a Protein Is a Mobile Flowering Signal in Rice
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Kim SL,Lee S,Kim HJ,Nam HG,An G
Plant Physiol. 2007 145 1484-94
OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
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Ishikawa R., Tamaki S., Yokoi S., Inagaki N., Shinomura T., Takano M., Shimamoto K.
Plant Cell 2005 17(12) 3326-36
Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice.
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Chardon F., Damerval C.
J. Mol. Evol. 2005 61(5) 579-90
Phylogenomic analysis of the PEBP gene family in cereals.
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Armstead, I.P., L.B. Turner, M. Farrell, L. Skot, P. Gomez, T. Montoya, I.S. Dornnison, I.P. King, M.Q. Humphreys
Theor. Appl. Genet. 2004 108 822-828
Synteny between a major heading date QTL in perennial ryegrass (Lolium perenne L.) and the Hd3 heading-date locus in rice.
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Hayama, R., Yokoi, S., Tamaki, S., Yano, M. and Shimamoto, K.
Nature 2003 422 719-722
Adaptation of photoperiodic control pathways produces short-day flowering in rice.
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Izawa, T., T. Oikawa, N. Sugiyama, T. Tanisaka, M. Yano and K. Shimamoto
Genes Dev. 2002 16 2006-2020
Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice.
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Monna, L., H. Lin, S. Kojima, T. Sasaki, M. Yano
Theor. Appl. Genet. 2002 104 772-778
Genetic dissection of a genomic region for a quantitative trait locus, Hd3, into two loci, Hd3a and Hd3b, controlling heading date in rice.
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Kojima, S., Takahashi, Y., Kobayashi, Y., Monna, L., Sasaki, T., Araki, T. and Yano, M.
Plant Cell Physiol. 2002 43 1096-1105
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Yano, M., Kojima, S., Takahashi, Y, Lin, H. and Sasaki, T.
Plant Physiol. 2001 127 1425-1429
Genetic control of flowering time in rice, a short-day plant.
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Lin, H.X., T. Yamamoto, T. Sasaki and M. Yano
Theor. Appl. Genet. 2000 101 1021-1028
Characterization and detection of epistatic interactions of 3 QTLs, Hd1, Hd2, and Hd3, controlling heading date in rice using nearly isogenic lines.
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Kojima, S., L. Monna. T. Fuse, T. Baba, T, Sasaki and M. Yano
Breeding Science 1998 48(Suppl. 2) 96
Fine-scale genetic linkage map and physical mapping of a rice photoperiod sensitivitiy gene, Hd-3.
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Yamamoto, T., Y. Kuboki, S.Y. Lin, T. Sasaki and M. Yano
Theor. Appl. Genet. 1998 97 37-44.
Fine mapping of quantitative trait loci Hd-1, Hd-2 and Hd-3, controlloing heading date of rice, as single Mendelian factors.
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Yano, M., Y. Harushima, Y. Nagamura, N. Kurata, Y. Minobe and T. Sasaki
Theor. Appl. Genet. 1997 95 1025-1032.
Identification of quantitative trait loci controlling heading date in rice using a high-density linkage map.
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Yano, M., T. Yamamoto, Y. Kuboki, S.Y. Lin, C. Orihara and T. Sasaki
Breeding Science 1996 46(Suppl. 2) 58
Fine mapping of quantitative trait loci, Hd-3, associated with heading date in rice chromosome 6.
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DB Reference
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Gramene ID
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GR:0060442
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Ontologies
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Gene Ontology
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reproductive developmental process( GO:0003006 )
nucleus( GO:0005634 )
phosphatidylethanolamine binding( GO:0008429 )
regulation of flower development( GO:0009909 )
inflorescence development( GO:0010229 )
cell differentiation( GO:0030154 )
regulation of timing of transition from vegetative to reproductive phase( GO:0048510 )
short-day photoperiodism( GO:0048572 )
short-day photoperiodism, flowering( GO:0048575 )
response to light stimulus( GO:0009416 )
phosphatidylcholine binding( GO:0031210 )
phospholipid binding( GO:0005543 )
cytoplasm( GO:0005737 )
flower development( GO:0009908 )
positive regulation of short-day photoperiodism, flowering( GO:0048576 )
positive regulation of long-day photoperiodism, flowering( GO:0048578 )
internode patterning( GO:0080006 )
floral organ development( GO:0048437 )
root development( GO:0048364 )
transcription factor activity( GO:0003700 )
photoperiodism( GO:0009648 )
response to abscisic acid stimulus( GO:0009737 )
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Trait Ontology
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days to maturity( TO:0000469 )
photoperiod sensitivity( TO:0000229 )
days to heading( TO:0000137 )
filled grain number( TO:0000447 )
seed set percent( TO:0000455 )
1000-seed weight( TO:0000382 )
nitrogen sensitivity( TO:0000011 )
flowering time( TO:0002616 )
abscisic acid sensitivity( TO:0000615 )
light sensitivity( TO:0000075 )
grain yield( TO:0000396 )
panicle number( TO:0000152 )
tillering ability( TO:0000329 )
internode length( TO:0000145 )
plant height( TO:0000207 )
grain weight( TO:0000590 )
tiller number( TO:0000346 )
floral organ development trait( TO:0006022 )
stem elongation( TO:0006036 )
root development trait( TO:0000656 )
root number( TO:0000084 )
panicle size( TO:0006032 )
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Plant Ontology
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inflorescence( PO:0009049 )
spikelet floret( PO:0009082 )
sporophyte( PO:0009003 )
seed( PO:0009010 )
portion of meristem tissue( PO:0009013 )
inflorescence meristem( PO:0000230 )
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Related Strains
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Phenotype images
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Last updated
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Mar 11, 2025
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