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Detail of Gene

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Basic Information
CGSNL Gene Symbol DCL1
Gene Symbol Synonym Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a
Gene Name Synonym Dicer like 1, Dicer-like 1, Endoribonuclease Dicer homolog 1, Dicer-like protein 1
Allele osdcl1, Osdcl1a, Osdcl1a-Ac
Chromosome No. 3
Explanation EC=3.1.26.- Q8LMR2. KC610856-KC610864 (O. sativa and wild rice species, partial cds). targeted by miR162 (Qin et al. 2017). dcl1a-Ac mutants (M0066754, M0040827) from the Taiwan Rice Insertional Mutant collection (TRIM; http:/ Gene Expression Omnibus (GEO) repository accession: GSE109307. GO:0072593: reactive oxygen species metabolic process. GO:1902895: positive regulation of miRNA transcription.
Trait Class Biochemical character
Tolerance and resistance - Disease resistance
cDNA Accession No. -
MSU ID LOC_Os03g02970.1
RAP ID Os03g0121800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Borna R.S., Murchie E.H., Pyke K.A., Roberts J.A., González-Carranza ZH.
Plant Biotechnol. J. 2022  20(2)  297-309
The rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.
Yuan Z., Pan J., Chen C., Tang Y., Zhang H., Guo J., Yang X., Chen L., Li C., Zhao K., Wang Q., Yang B., Sun C., Deng X., Wang P.
Int J Mol Sci 2022  23(19) 
<i>DRB2</i> Modulates leaf rolling by Regulating Accumulation of MicroRNAs Related to Leaf Development in Rice.
Reshetnyak G., Jacobs J.M., Auguy F., Sciallano C., Claude L., Medina C., Perez-Quintero AL., Comte A., Thomas E., Bogdanove A., Koebnik R., Szurek B., Dievart A., Brugidou C., Lacombe S., Cunnac S.
Sci Rep 2021  11(1)  24141
An atypical class of non-coding small RNAs is produced in rice leaves upon bacterial infection.
Li X.P., Ma X.C., Wang H., Zhu Y., Liu X.X., Li T.T., Zheng Y.P., Zhao J.Q., Zhang J.W., Huang Y.Y., Pu M., Feng H., Fan J., Li Y., Wang W.M.
Rice (N Y) 2020  13(1)  38
Osa-miR162a fine-tunes rice resistance to Magnaporthe oryzae and Yield.
Jia Y., Li C., Li Q., Liu P., Liu D., Liu Z., Wang Y., Jiang G., Zhai W.
Int J Mol Sci 2020  21(3) 
Characteristic Dissection of <i>Xanthomonas oryzae</i> pv. o<i>ryzae</i> Responsive MicroRNAs in Rice.
Salvador-Guirao R., Baldrich P., Tomiyama S., Hsing Y.I., Okada K., San Segundo B.
Ann. Bot. 2019  123(1)  79-93
OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.
Xu P., Ali A., Han B., Wu X.
Front Plant Sci 2018  9  1528
Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.
Qin J., Tang Z., Ma X., Meng Y.
Gene 2017   
Investigating the regulatory roles of the microRNAs and the Argonaute 1-enriched small RNAs in plant metabolism.
Zhang D., Liu M., Tang M., Dong B., Wu D., Zhang Z., Zhou B.
Plant Sci. 2015  237  24-32
Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.
Zhu,T., Xu,P.Z., Liu,J.P., Peng,S., Mo,X.C. and Gao,L.Z.
Mol. Phylogenet. Evol. 2014  70  348-361
Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions
Wang L., Song X., Gu L., Li X., Cao S., Chu C., Cui X., Chen X., Cao X.
Plant Cell 2013  25(2)  715-27
NOT2 proteins promote polymerase II-dependent transcription and interact with multiple MicroRNA biogenesis factors in Arabidopsis.
Song X., Li P., Zhai J., Zhou M., Ma L., Liu B., Jeong D.H., Nakano M., Cao S., Liu C., Chu C., Wang X.J., Green P.J., Meyers B.C., Cao X.
Plant J. 2012  69(3)  462-74
Roles of DCL4 and DCL3b in rice phased small RNA biogenesis.
Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011  23(12)  4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
Wu L., Zhou H., Zhang Q., Zhang J., Ni F., Liu C., Qi Y.
Mol. Cell 2010  38(3)  465-75
DNA methylation mediated by a microRNA pathway.
Lu C,Jeong DH,Kulkarni K,Pillay M,Nobuta K,German R,Thatcher SR,Maher C,Zhang L,Ware D,Liu B,Cao X,Meyers BC,Green PJ
Proc. Natl. Acad. Sci. U.S.A. 2008  105  4951-6
Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs).
Liu B., Li P., Li X., Liu C., Cao S., Chu C., Cao X.
Plant Physiol. 2005  139(1)  296-305
Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice.
TextPresso Search Search textpresso for DCL1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0101251
Gene Ontology defense response to bacterium( GO:0042742 )
helicase activity( GO:0004386 )
primary microRNA processing( GO:0031053 )
gene silencing by miRNA( GO:0035195 )
nucleus( GO:0005634 )
production of miRNAs involved in gene silencing by miRNA( GO:0035196 )
ATP binding( GO:0005524 )
ribonuclease III activity( GO:0004525 )
endoribonuclease activity( GO:0004521 )
double-stranded RNA binding( GO:0003725 )
magnesium ion binding( GO:0000287 )
adventitious root development( GO:0048830 )
manganese ion binding( GO:0030145 )
RNA-induced silencing complex( GO:0016442 )
multicellular organismal development( GO:0007275 )
miRNA binding( GO:0035198 )
siRNA binding( GO:0035197 )
shoot development( GO:0048367 )
defense response to fungus( GO:0050832 )
phytoalexin biosynthetic process( GO:0052315 )
Trait Ontology growth and development trait( TO:0000357 )
root number( TO:0000084 )
leaf color( TO:0000326 )
blast disease( TO:0000074 )
momilactone A content( TO:0002670 )
momilactone B content( TO:0002671 )
plant height( TO:0000207 )
bacterial blight disease resistance( TO:0000175 )
leaf rolling( TO:0000085 )
Plant Ontology inflorescence( PO:0009049 )
Related Strains
Phenotype images
Last updated
Jan 10, 2023