Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol DCL1
Gene Symbol Synonym Dcl1, OsDCL1, osDCL1, Os-DCL1
CGSNL Gene Name DICER-LIKE 1
Gene Name Synonym Dicer like 1, Dicer-like 1, Endoribonuclease Dicer homolog 1, Dicer-like protein 1
Protein Name DICER-LIKE PROTEIN 1
Allele osdcl1
Chromosome No. 3
Explanation EC=3.1.26.- Q8LMR2. PO:0009049; inflorescence. KC610856-KC610864 (O. sativa and wild rice species, partial cds). LOC_Os03g02970. targeted by miR162 (Qin et al. 2017).
Trait Class Biochemical character
Tolerance and resistance - Disease resistance
Expression
Sequence/Locus
cDNA Accession No. -
RAP ID Os03g0121800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Xu P., Ali A., Han B., Wu X.
Front Plant Sci 2018  9  1528
Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.
Qin J., Tang Z., Ma X., Meng Y.
Gene 2017   
Investigating the regulatory roles of the microRNAs and the Argonaute 1-enriched small RNAs in plant metabolism.
Zhang D., Liu M., Tang M., Dong B., Wu D., Zhang Z., Zhou B.
Plant Sci. 2015  237  24-32
Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.
Zhu,T., Xu,P.Z., Liu,J.P., Peng,S., Mo,X.C. and Gao,L.Z.
Mol. Phylogenet. Evol. 2014  70  348-361
Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions
Wang L., Song X., Gu L., Li X., Cao S., Chu C., Cui X., Chen X., Cao X.
Plant Cell 2013  25(2)  715-27
NOT2 proteins promote polymerase II-dependent transcription and interact with multiple MicroRNA biogenesis factors in Arabidopsis.
Song X., Li P., Zhai J., Zhou M., Ma L., Liu B., Jeong D.H., Nakano M., Cao S., Liu C., Chu C., Wang X.J., Green P.J., Meyers B.C., Cao X.
Plant J. 2012  69(3)  462-74
Roles of DCL4 and DCL3b in rice phased small RNA biogenesis.
Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011  23(12)  4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
Wu L., Zhou H., Zhang Q., Zhang J., Ni F., Liu C., Qi Y.
Mol. Cell 2010  38(3)  465-75
DNA methylation mediated by a microRNA pathway.
Lu C,Jeong DH,Kulkarni K,Pillay M,Nobuta K,German R,Thatcher SR,Maher C,Zhang L,Ware D,Liu B,Cao X,Meyers BC,Green PJ
Proc. Natl. Acad. Sci. U.S.A. 2008  105  4951-6
Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs).
Liu B., Li P., Li X., Liu C., Cao S., Chu C., Cao X.
Plant Physiol. 2005  139(1)  296-305
Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice.
TextPresso Search Search textpresso for DCL1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0101251
Ontologies
Gene Ontology production of miRNAs involved in gene silencing by miRNA( GO:0035196 )
gene silencing by miRNA( GO:0035195 )
primary microRNA processing( GO:0031053 )
ATP binding( GO:0005524 )
ribonuclease III activity( GO:0004525 )
endoribonuclease activity( GO:0004521 )
helicase activity( GO:0004386 )
double-stranded RNA binding( GO:0003725 )
magnesium ion binding( GO:0000287 )
adventitious root development( GO:0048830 )
manganese ion binding( GO:0030145 )
RNA-induced silencing complex( GO:0016442 )
multicellular organismal development( GO:0007275 )
nucleus( GO:0005634 )
miRNA binding( GO:0035198 )
siRNA binding( GO:0035197 )
shoot development( GO:0048367 )
defense response to fungus( GO:0050832 )
Trait Ontology leaf rolling( TO:0000085 )
plant height( TO:0000207 )
growth and development trait( TO:0000357 )
root number( TO:0000084 )
leaf color( TO:0000326 )
blast disease( TO:0000074 )
Plant Ontology inflorescence( PO:0009049 )
Related Strains
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Phenotype images
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Last updated
May 1, 2019


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