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Basic Information
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CGSNL Gene Symbol
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ABI3
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Gene Symbol Synonym
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OsLFL2, LFL2, OsIDEF1, IDEF1, OsABI3
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CGSNL Gene Name
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ABA INSENSITIVE 3
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Gene Name Synonym
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B3 domain-containing protein IDEF1, Protein IRON DEFICIENCY-RESPONSIVE ELEMENT FACTOR 1, Transcription factor IDEF1, LEAFY COTYLEDON 2 and FUSCA 3-LIKE 2, IDE-binding factor 1, Iron Deficiency-responsive Element-binding Factor 1, iron deficiency-responsive cis-acting element binding factor 1
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Protein Name
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IDE-BINDING FACTOR 1
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Allele
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Chromosome No.
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8
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Explanation
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BR000654. Q6Z1Z3. PO:0009005; root ; PO:0009025; leaf. Positive transcriptional regulator. GO:1990641: response to iron ion starvation. TO:0020090: zinc content trait.
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Trait Class
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Tolerance and resistance - Stress tolerance
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK107456
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MSU ID
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LOC_Os08g01090.1
LOC_Os08g01090.2
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RAP ID
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Os08g0101000
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Liu Y.H., Jiang M., Li R.Q., Huang J.Z., Shu Q.Y.
Plants (Basel) 2021 10(3)
OsKEAP1 Interacts with OsABI5 and Its Downregulation Increases the Transcription of <i>OsABI5</i> and the ABA Response Genes in Germinating Rice Seeds.
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Liu J., Zhan J., Chen J., Lu X., Zhi S., Ye G.
Front Genet 2021 12 701658
Validation of Genes Affecting Rice Grain Zinc Content Through Candidate Gene-Based Association Analysis.
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Tan S., Liu F., Pan X.X., Zang Y.P., Jin F., Zu W.X., Qi X.T., Xiao W., Yin L.P.
Sci Rep 2016 6 25485
CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa.
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Kobayashi T., Itai R.N., Senoura T., Oikawa T., Ishimaru Y., Ueda M., Nakanishi H., Nishizawa N.K.
Plant Mol. Biol. 2016 91(4-5) 533-47
Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.
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Kobayashi T., Nishizawa N.K.
Plant Sci. 2014 224 36-43
Iron sensors and signals in response to iron deficiency.
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Kobayashi T.a b, Nakanishi Itai R.c, Nishizawa N.K.b
Rice 2014 7
Iron deficiency responses in rice roots
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Yang J., Lee S., Hang R., Kim S.R., Lee Y.S., Cao X., Amasino R., An G.
Plant J. 2013 73(4) 566-78
OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
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Kobayashi T., Itai R.N., Aung M.S., Senoura T., Nakanishi H., Nishizawa N.K.
Plant J. 2012 69(1) 81-91
The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status.
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Kobayashi T., Naoko K Nishizawa
Annu Rev Plant Biol 2012 63 131-52
Iron uptake, translocation, and regulation in higher plants.
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Kobayashi T., Ogo Y., May Sann Aung, Nozoye T., Reiko Nakanishi Itai, Nakanishi H., Yamakawa T., Naoko K Nishizawa
Ann. Bot. 2010 105(7) 1109-17
The spatial expression and regulation of transcription factors IDEF1 and IDEF2.
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Kobayashi T,Itai RN,Ogo Y,Kakei Y,Nakanishi H,Takahashi M,Nishizawa NK
Plant J. 2009 60(6) 948-61
The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes.
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Kobayashi T,Ogo Y,Itai RN,Nakanishi H,Takahashi M,Mori S,Nishizawa NK
Proc. Natl. Acad. Sci. U.S.A. 2007 104 19150-5
The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants.
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TextPresso Search
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Search textpresso for ABI3
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0080043
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Ontologies
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Gene Ontology
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cellular response to iron ion starvation( GO:0010106 )
response to abscisic acid stimulus( GO:0009737 )
abscisic acid mediated signaling( GO:0009738 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
promoter binding( GO:0010843 )
sequence-specific DNA binding( GO:0043565 )
regulation of transcription( GO:0045449 )
response to jasmonic acid stimulus( GO:0009753 )
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Trait Ontology
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iron sensitivity( TO:0000224 )
plant height( TO:0000207 )
jasmonic acid sensitivity( TO:0000172 )
abscisic acid sensitivity( TO:0000615 )
chlorophyll content( TO:0000495 )
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Plant Ontology
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root( PO:0009005 )
vascular leaf( PO:0009025 )
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Related Strains
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Phenotype images
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-
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Last updated
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Mar 11, 2022
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