Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol IDEF1
Gene Symbol Synonym OsLFL2, OsIDEF1
CGSNL Gene Name IDE-BINDING FACTOR 1
Gene Name Synonym B3 domain-containing protein IDEF1, Protein IRON DEFICIENCY-RESPONSIVE ELEMENT FACTOR 1, Transcription factor IDEF1, LEAFY COTYLEDON 2 and FUSCA 3-LIKE 2, IDE-binding factor 1, Iron Deficiency-responsive Element-binding Factor 1, iron deficiency-responsive cis-acting element binding factor 1
Protein Name IDE-BINDING FACTOR 1
Allele
Chromosome No. 8
Explanation BR000654. Q6Z1Z3. PO:0009005; root ; PO:0009025; leaf. Positive transcriptional regulator.
Trait Class Tolerance and resistance - Stress tolerance
Other
Expression
Sequence/Locus
cDNA Accession No. AK107456
RAP ID Os08g0101000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Kobayashi T., Itai R.N., Senoura T., Oikawa T., Ishimaru Y., Ueda M., Nakanishi H., Nishizawa N.K.
Plant Mol. Biol. 2016  91(4-5)  533-47
Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.
Kobayashi T., Nishizawa N.K.
Plant Sci. 2014  224  36-43
Iron sensors and signals in response to iron deficiency.
Kobayashi T.a b, Nakanishi Itai R.c, Nishizawa N.K.b
Rice 2014  7 
Iron deficiency responses in rice roots
Yang J., Lee S., Hang R., Kim S.R., Lee Y.S., Cao X., Amasino R., An G.
Plant J. 2013  73(4)  566-78
OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
Kobayashi T., Naoko K Nishizawa
Annu Rev Plant Biol 2012  63  131-52
Iron uptake, translocation, and regulation in higher plants.
Kobayashi T., Itai R.N., Aung M.S., Senoura T., Nakanishi H., Nishizawa N.K.
Plant J. 2012  69(1)  81-91
The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status.
Kobayashi T., Ogo Y., May Sann Aung, Nozoye T., Reiko Nakanishi Itai, Nakanishi H., Yamakawa T., Naoko K Nishizawa
Ann. Bot. 2010  105(7)  1109-17
The spatial expression and regulation of transcription factors IDEF1 and IDEF2.
Kobayashi T,Itai RN,Ogo Y,Kakei Y,Nakanishi H,Takahashi M,Nishizawa NK
Plant J. 2009  60(6)  948-61
The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes.
Kobayashi T,Ogo Y,Itai RN,Nakanishi H,Takahashi M,Mori S,Nishizawa NK
Proc. Natl. Acad. Sci. U.S.A. 2007  104  19150-5
The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants.
TextPresso Search Search textpresso for IDEF1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0080043
Ontologies
Gene Ontology transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
promoter binding( GO:0010843 )
cellular response to iron ion starvation( GO:0010106 )
sequence-specific DNA binding( GO:0043565 )
regulation of transcription( GO:0045449 )
response to jasmonic acid stimulus( GO:0009753 )
Trait Ontology chlorophyll content( TO:0000495 )
iron sensitivity( TO:0000224 )
plant height( TO:0000207 )
jasmonic acid sensitivity( TO:0000172 )
Plant Ontology root( PO:0009005 )
vascular leaf( PO:0009025 )
Related Strains
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Phenotype images
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Last updated
2016-09-05 10:25:22.11


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