Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol ABI3
Gene Symbol Synonym OsLFL2, LFL2, OsIDEF1, IDEF1, OsABI3
Gene Name Synonym B3 domain-containing protein IDEF1, Protein IRON DEFICIENCY-RESPONSIVE ELEMENT FACTOR 1, Transcription factor IDEF1, LEAFY COTYLEDON 2 and FUSCA 3-LIKE 2, IDE-binding factor 1, Iron Deficiency-responsive Element-binding Factor 1, iron deficiency-responsive cis-acting element binding factor 1
Chromosome No. 8
Explanation BR000654. Q6Z1Z3. PO:0009005; root ; PO:0009025; leaf. Positive transcriptional regulator. GO:1990641: response to iron ion starvation. TO:0020090: zinc content trait.
Trait Class Tolerance and resistance - Stress tolerance
cDNA Accession No. AK107456
MSU ID LOC_Os08g01090.1
RAP ID Os08g0101000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Liu Y.H., Jiang M., Li R.Q., Huang J.Z., Shu Q.Y.
Plants (Basel) 2021  10(3) 
OsKEAP1 Interacts with OsABI5 and Its Downregulation Increases the Transcription of <i>OsABI5</i> and the ABA Response Genes in Germinating Rice Seeds.
Liu J., Zhan J., Chen J., Lu X., Zhi S., Ye G.
Front Genet 2021  12  701658
Validation of Genes Affecting Rice Grain Zinc Content Through Candidate Gene-Based Association Analysis.
Tan S., Liu F., Pan X.X., Zang Y.P., Jin F., Zu W.X., Qi X.T., Xiao W., Yin L.P.
Sci Rep 2016  6  25485
CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa.
Kobayashi T., Itai R.N., Senoura T., Oikawa T., Ishimaru Y., Ueda M., Nakanishi H., Nishizawa N.K.
Plant Mol. Biol. 2016  91(4-5)  533-47
Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.
Kobayashi T., Nishizawa N.K.
Plant Sci. 2014  224  36-43
Iron sensors and signals in response to iron deficiency.
Kobayashi T.a b, Nakanishi Itai R.c, Nishizawa N.K.b
Rice 2014  7 
Iron deficiency responses in rice roots
Yang J., Lee S., Hang R., Kim S.R., Lee Y.S., Cao X., Amasino R., An G.
Plant J. 2013  73(4)  566-78
OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
Kobayashi T., Itai R.N., Aung M.S., Senoura T., Nakanishi H., Nishizawa N.K.
Plant J. 2012  69(1)  81-91
The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status.
Kobayashi T., Naoko K Nishizawa
Annu Rev Plant Biol 2012  63  131-52
Iron uptake, translocation, and regulation in higher plants.
Kobayashi T., Ogo Y., May Sann Aung, Nozoye T., Reiko Nakanishi Itai, Nakanishi H., Yamakawa T., Naoko K Nishizawa
Ann. Bot. 2010  105(7)  1109-17
The spatial expression and regulation of transcription factors IDEF1 and IDEF2.
Kobayashi T,Itai RN,Ogo Y,Kakei Y,Nakanishi H,Takahashi M,Nishizawa NK
Plant J. 2009  60(6)  948-61
The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes.
Kobayashi T,Ogo Y,Itai RN,Nakanishi H,Takahashi M,Mori S,Nishizawa NK
Proc. Natl. Acad. Sci. U.S.A. 2007  104  19150-5
The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants.
TextPresso Search Search textpresso for ABI3 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0080043
Gene Ontology cellular response to iron ion starvation( GO:0010106 )
response to abscisic acid stimulus( GO:0009737 )
abscisic acid mediated signaling( GO:0009738 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
promoter binding( GO:0010843 )
sequence-specific DNA binding( GO:0043565 )
regulation of transcription( GO:0045449 )
response to jasmonic acid stimulus( GO:0009753 )
Trait Ontology iron sensitivity( TO:0000224 )
plant height( TO:0000207 )
jasmonic acid sensitivity( TO:0000172 )
abscisic acid sensitivity( TO:0000615 )
chlorophyll content( TO:0000495 )
Plant Ontology root( PO:0009005 )
vascular leaf( PO:0009025 )
Related Strains
Phenotype images
Last updated
Mar 11, 2022