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Basic Information
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CGSNL Gene Symbol
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LSI2
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Gene Symbol Synonym
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Lsi2, SIET1, OsLsi2, OsSIET1
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CGSNL Gene Name
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LOW SILICON RICE 2
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Gene Name Synonym
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low silicon 2, silicon efflux transporter 1, Si efflux transporter 1, Si/arsenite efflux transporter Lsi2
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Protein Name
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SILICON EFFLUX TRANSPORTER 1
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Allele
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lsi2, OsLsi2-1, OsLsi2-2, OsLsi2-3, cr-OsLsi2, cr-OsLsi2-1
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Chromosome No.
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3
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Explanation
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AB222273. PO:0005772; exodermis ; PO:0009006; shoot ; PO:0000252; endodermis. GRO:0007045; 09-mature grain stage TO:0006054: arsenic concentration. ArsB/NhaD permease (arsenite efflux). TO:0001048: silicon content trait. TO:1000026: root system arsenic content. TO:0020089: iron content trait. TO:0020090: zinc content trait. TO:0006059: cadmium content trait. TO:0001044: cobalt content trait. TO:0006051: nickel content. TO:0001045: chromium content trait. TO:0006054: arsenic content trait.
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Trait Class
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Vegetative organ - Root
Tolerance and resistance - Insect resistance
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK101092
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MSU ID
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LOC_Os03g01700.1
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RAP ID
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Os03g0107300
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Hu S., Zhou L., Wang J., Mawia A.M., Hui S., Xu B., Jiao G., Sheng Z., Shao G., Wei X., Wang L., Xie L., Zhao F., Tang S., Hu P.
Plant Biotechnol. J. 2024
Production of grains with ultra-low heavy metal accumulation by pyramiding novel Alleles of OsNramp5 and OsLsi2 in two-line hybrid rice.
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Adhikari A., Aneefi A.G., Sisuvanh H., Singkham S., Pius M.V., Akter F., Kwon E.H., Kang S.M., Woo Y.J., Yun B.W., Lee I.J.
Int J Mol Sci 2023 24(24)
Dynamics of Humic Acid, Silicon, and Biochar under Heavy Metal, Drought, and Salinity with Special Reference to Phytohormones, Antioxidants, and Melatonin Synthesis in Rice.
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Chaganti C., Phule A.S., Chandran L.P., Sonth B., Kavuru V.P.B., Govindannagari R., Sundaram R.M.
Front Microbiol 2023 14 1168415
Silicate solubilizing and plant growth promoting bacteria interact with biogenic silica to impart heat stress tolerance in rice by modulating physiology and gene expression.
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Ma C., Hao Y., Zhao J., Zuverza-Mena N., Meselhy A.G., Dhankher O.P., Rui Y., White J.C., Xing B.
Nanomaterials (Basel) 2021 11(4)
Graphitic Carbon Nitride (C3N4) Reduces Cadmium and Arsenic Phytotoxicity and Accumulation in Rice (<i>Oryza sativa</i> L.).
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Wu Q., Shi J., Jiang X., Wu H.
Nanomaterials (Basel) 2021 11(9)
Regulatory Mechanism of Copper Oxide Nanoparticles on Uptake of Different Species of Arsenic in Rice.
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Réthoré E., Ali N., Yvin J.C., Hosseini S.A.
Int J Mol Sci 2020 21(10)
Silicon Regulates Source to Sink Metabolic Homeostasis and Promotes Growth of Rice Plants Under Sulfur Deficiency.
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Tripathi D.K., Rai P., Guerriero G., Sharma S., Corpas F.J., Singh V.P.
J. Exp. Bot. 2020
Silicon induces adventitious root formation in rice (Oryza sativa L.) under arsenate stress with the involvement of nitric oxide and indole-3-acetic acid.
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Pan D., Yi J., Li F., Li X., Liu C., Wu W., Tao T.
BMC Plant Biol. 2020 20(1) 133
Dynamics of gene expression associated with arsenic uptake and transport in rice during the whole growth period.
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Chen Y., Han Y.H., Cao Y., Zhu Y.G., Rathinasabapathi B., Ma L.Q.
Front Plant Sci 2017 8 268
Arsenic Transport in Rice and Biological Solutions to Reduce Arsenic Risk from Rice.
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Wang F.Z., Chen M.X., Yu L.J., Xie L.J., Yuan L.B., Qi H., Xiao M., Guo W., Chen Z., Yi K., Zhang J., Qiu R., Shu W., Xiao S., Chen Q.F.
Front Plant Sci 2017 8 1868
OsARM1, an R2R3 MYB transcription factor, Is Involved in Regulation of the Response to Arsenic Stress in Rice.
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Yamaji N., Sakurai G., Mitani-Ueno N., Ma J.F.
Proc. Natl. Acad. Sci. U.S.A. 2015
Orchestration of three transporters and distinct vascular structures in node for intervascular transfer of silicon in rice.
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Ye M., Song Y., Long J., Wang R., Baerson S.R., Pan Z., Zhu-Salzman K., Xie J., Cai K., Luo S., Zeng R.
Proc. Natl. Acad. Sci. U.S.A. 2013 110(38) E3631-9
Priming of jasmonate-mediated antiherbivore defense responses in rice by silicon.
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Zhang Y.X., Liu J.G., Chai T.Y., Jin L.
Progress in Biochemistry and Biophysics 2011 38 400-407
Advances in the uptake and translocation of silicon in plants
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Moore K.L. , Schr?der M. , Wu Z. , Martin B.G. , Hawes C.R. , McGrath S.P. , Hawkesford M.J. , Feng Ma J. , Zhao F.J. , Grovenor C.R.
Plant Physiol. 2011 156(2) 913-24
High-resolution secondary ion mass spectrometry reveals the contrasting subcellular distribution of arsenic and silicon in rice roots.
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Li RY,Ago Y,Liu WJ,Mitani N,Feldmann J,McGrath SP,Ma JF,Zhao FJ
Plant Physiol. 2009 150(4) 2071-80
The rice aquaporin Lsi1 mediates uptake of methylated arsenic species.
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Yamaji,N., Mitatni,N. and Ma,J.F.
Plant Cell 2008 20(5) 1381-1389
A transporter regulating silicon distribution in rice shoots
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Ma JF,Yamaji N,Mitani N,Xu XY,Su YH,McGrath SP,Zhao FJ
Proc. Natl. Acad. Sci. U.S.A. 2008 105 9931-5
Transporters of arsenite in rice and their role in arsenic accumulation in rice grain.
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Ma JF,Yamaji N,Tamai K,Mitani N
Plant Physiol. 2007 145 919-24
Genotypic difference in silicon uptake and expression of silicon transporter genes in rice.
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Ma,J.F., Yamaji,N., Mitani,N., Tamai,K., Konishi,S., Fujiwara,T., Katsuhara,M. and Yano,M.
Nature 2007 448(7150) 209-212
An efflux transporter of silicon in rice
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DB Reference
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Gramene ID
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GR:0080037
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Ontologies
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Gene Ontology
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response to salt stress( GO:0009651 )
response to silicon dioxide( GO:0034021 )
response to heat( GO:0009408 )
response to symbiotic bacterium( GO:0009609 )
response to copper ion( GO:0046688 )
adventitious root development( GO:0048830 )
response to auxin stimulus( GO:0009733 )
response to starvation( GO:0042594 )
response to inorganic substance( GO:0010035 )
response to arsenic( GO:0046685 )
transport( GO:0006810 )
silicon efflux transmembrane transporter activity( GO:0032523 )
Casparian strip( GO:0048226 )
regulation of shoot development( GO:0048831 )
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Trait Ontology
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grain yield( TO:0000396 )
silicon sensitivity( TO:0000031 )
sulfur sensitivity( TO:0000007 )
auxin sensitivity( TO:0000163 )
copper sensitivity( TO:0000021 )
heat tolerance( TO:0000259 )
salt tolerance( TO:0006001 )
manganese content( TO:0020091 )
sugar content( TO:0000333 )
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Plant Ontology
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endodermis( PO:0000252 )
exodermis( PO:0005772 )
shoot system( PO:0009006 )
root( PO:0009005 )
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Related Strains
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Phenotype images
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-
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Last updated
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Oct 8, 2024
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