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Basic Information
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CGSNL Gene Symbol
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SLRL1
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Gene Symbol Synonym
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OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1
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CGSNL Gene Name
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SLENDER RICE LIKE 1
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Gene Name Synonym
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SLR1-like1, GRAS protein 1
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Protein Name
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Allele
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Chromosome No.
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1
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Explanation
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DELLA subfamily gene OsGAI in Zhou et al. 2014. OsSLRL in Chen et al. 2015. AU094565. GO:2000022: regulation of jasmonic acid mediated signaling pathway. SLN1 (slender 1) in Wang et al. 2021. TO:0000949: seedling growth and development trait. GO:0090351: seedling development.
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Trait Class
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Vegetative organ - Culm
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK242412
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MSU ID
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LOC_Os01g45860.1
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RAP ID
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Os01g0646300
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Wang Y., Wang Y., Yang R., Wang F., Fu J., Yang W., Bai T., Wang S., Yin H.
J Zhejiang Univ Sci B 2021 22(12) 1002-1021
Effects of gibberellin priming on seedling emergence and transcripts involved in mesocotyl elongation in rice under deep direct-seeding conditions.
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Dutta M., Saha A., Moin M., Kirti P.B.
Front Plant Sci 2021 12 777285
Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS transcription factor Genes in Rice.
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Chen Y., Dan Z., Gao F., Chen P., Fan F., Li S.
Plant Physiol. 2020
Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism.
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Um T.Y., Lee H.Y., Lee S., Chang S.H., Chung P.J., Oh K.B., Kim J.K., Jang G., Choi Y.D.
Front Plant Sci 2018 9 1866
JASMONATE ZIM-DOMAIN PROTEIN 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.
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Burman N., Bhatnagar A., Khurana J.P.
Plant Physiol. 2017
OsbZIP48, a HY5 transcription factor ortholog, exerts pleiotropic effects in light-regulated development.
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Singh P., Sinha A.K.
Plant Cell 2016
A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN ACTIVATED PROTEIN KINASE 3 Imparts submergence tolerance in Rice.
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Chen X., Lu S., Wang Y., Zhang X., Lv B., Luo L., Xi D., Shen J., Ma H., Ming F.
Plant J. 2015 82(2) 302-14
OsNAC2 encoding a NAC transcription factor that affects plant height through mediating the gibberellic acid pathway in rice.
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Zhou W., Malabanan P.B., Abrigo E.
Euphytica 2014 201 97-107
OsHox4 regulates GA signaling by interacting with DELLA-like genes and GA oxidase genes in rice
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Tang X., Zhang Z.-Y., Zhang W.-J., Zhao X.-M., Li X., Zhang D., Liu Q.-Q., Tang W.-H.
Plant Physiol. 2010 154(4) 1855-1870
Global gene profiling of laser-captured pollen mother cells indicates molecular pathways and gene subfamilies involved in rice meiosis.
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Fukao T., Julia Bailey-Serres
Proc. Natl. Acad. Sci. U.S.A. 2008 105(43) 16814-9
submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice.
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Hirano K., Aya K., Hobo T., Sakakibara H., Kojima M., Rosalyn Angeles Shim, Hasegawa Y., Miyako Ueguchi-Tanaka, Matsuoka M.
Plant & cell physiology 2008 49(10) 1429-50
Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice.
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Liu T,Gu JY,Xu CJ,Gao Y,An CC
Biochem. Biophys. Res. Commun. 2007 358 983-9
Overproduction of OsSLRL2 alters the development of transgenic Arabidopsis plants.
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Itoh H., Shimada A., Miyako Ueguchi-Tanaka, Kamiya N., Hasegawa Y., Ashikari M., Matsuoka M.
Plant J. 2005 44(4) 669-79
Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice.
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Tian C, Wan P, Sun S, Li J, Chen M.
Plant Mol. Biol. 2004 54 519-532
Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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internode patterning( GO:0080006 )
defense response to fungus( GO:0050832 )
defense response to bacterium( GO:0042742 )
gibberellic acid mediated signaling( GO:0009740 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
negative regulation of gibberellic acid mediated signaling( GO:0009938 )
regulation of gene expression( GO:0010468 )
regulation of transcription( GO:0045449 )
response to flooding( GO:0009413 )
response to gibberellin stimulus( GO:0009739 )
response to jasmonic acid stimulus( GO:0009753 )
jasmonic acid mediated signaling pathway( GO:0009867 )
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Trait Ontology
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gibberellic acid sensitivity( TO:0000166 )
submergence sensitivity( TO:0000286 )
jasmonic acid sensitivity( TO:0000172 )
bacterial blight disease resistance( TO:0000175 )
sheath blight disease resistance( TO:0000255 )
mesocotyl length( TO:0000544 )
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Plant Ontology
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-
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Related Strains
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Phenotype images
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Last updated
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Jun 3, 2022
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Update info.