Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SLRL1
Gene Symbol Synonym OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1
CGSNL Gene Name SLENDER RICE LIKE 1
Gene Name Synonym SLR1-like1, GRAS protein 1
Protein Name
Allele
Chromosome No. 1
Explanation DELLA subfamily gene OsGAI in Zhou et al. 2014. OsSLRL in Chen et al. 2015. AU094565. GO:2000022: regulation of jasmonic acid mediated signaling pathway. SLN1 (slender 1) in Wang et al. 2021. TO:0000949: seedling growth and development trait. GO:0090351: seedling development.
Trait Class Vegetative organ - Culm
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
Other
Expression
Sequence/Locus
cDNA Accession No. AK242412
MSU ID LOC_Os01g45860.1
RAP ID Os01g0646300
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Wang Y., Wang Y., Yang R., Wang F., Fu J., Yang W., Bai T., Wang S., Yin H.
J Zhejiang Univ Sci B 2021  22(12)  1002-1021
Effects of gibberellin priming on seedling emergence and transcripts involved in mesocotyl elongation in rice under deep direct-seeding conditions.
Dutta M., Saha A., Moin M., Kirti P.B.
Front Plant Sci 2021  12  777285
Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS transcription factor Genes in Rice.
Chen Y., Dan Z., Gao F., Chen P., Fan F., Li S.
Plant Physiol. 2020   
Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism.
Um T.Y., Lee H.Y., Lee S., Chang S.H., Chung P.J., Oh K.B., Kim J.K., Jang G., Choi Y.D.
Front Plant Sci 2018  9  1866
JASMONATE ZIM-DOMAIN PROTEIN 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.
Burman N., Bhatnagar A., Khurana J.P.
Plant Physiol. 2017   
OsbZIP48, a HY5 transcription factor ortholog, exerts pleiotropic effects in light-regulated development.
Singh P., Sinha A.K.
Plant Cell 2016   
A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN ACTIVATED PROTEIN KINASE 3 Imparts submergence tolerance in Rice.
Chen X., Lu S., Wang Y., Zhang X., Lv B., Luo L., Xi D., Shen J., Ma H., Ming F.
Plant J. 2015  82(2)  302-14
OsNAC2 encoding a NAC transcription factor that affects plant height through mediating the gibberellic acid pathway in rice.
Zhou W., Malabanan P.B., Abrigo E.
Euphytica 2014  201  97-107
OsHox4 regulates GA signaling by interacting with DELLA-like genes and GA oxidase genes in rice
Tang X., Zhang Z.-Y., Zhang W.-J., Zhao X.-M., Li X., Zhang D., Liu Q.-Q., Tang W.-H.
Plant Physiol. 2010  154(4)  1855-1870
Global gene profiling of laser-captured pollen mother cells indicates molecular pathways and gene subfamilies involved in rice meiosis.
Fukao T., Julia Bailey-Serres
Proc. Natl. Acad. Sci. U.S.A. 2008  105(43)  16814-9
submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice.
Hirano K., Aya K., Hobo T., Sakakibara H., Kojima M., Rosalyn Angeles Shim, Hasegawa Y., Miyako Ueguchi-Tanaka, Matsuoka M.
Plant & cell physiology 2008  49(10)  1429-50
Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice.
Liu T,Gu JY,Xu CJ,Gao Y,An CC
Biochem. Biophys. Res. Commun. 2007  358  983-9
Overproduction of OsSLRL2 alters the development of transgenic Arabidopsis plants.
Itoh H., Shimada A., Miyako Ueguchi-Tanaka, Kamiya N., Hasegawa Y., Ashikari M., Matsuoka M.
Plant J. 2005  44(4)  669-79
Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice.
Tian C, Wan P, Sun S, Li J, Chen M.
Plant Mol. Biol. 2004  54  519-532
Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.
TextPresso Search Search textpresso for SLRL1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology internode patterning( GO:0080006 )
defense response to fungus( GO:0050832 )
defense response to bacterium( GO:0042742 )
gibberellic acid mediated signaling( GO:0009740 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
negative regulation of gibberellic acid mediated signaling( GO:0009938 )
regulation of gene expression( GO:0010468 )
regulation of transcription( GO:0045449 )
response to flooding( GO:0009413 )
response to gibberellin stimulus( GO:0009739 )
response to jasmonic acid stimulus( GO:0009753 )
jasmonic acid mediated signaling pathway( GO:0009867 )
Trait Ontology gibberellic acid sensitivity( TO:0000166 )
submergence sensitivity( TO:0000286 )
jasmonic acid sensitivity( TO:0000172 )
bacterial blight disease resistance( TO:0000175 )
sheath blight disease resistance( TO:0000255 )
mesocotyl length( TO:0000544 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Jun 3, 2022


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