|
Basic Information
|
|
CGSNL Gene Symbol
|
LCG1
|
|
Gene Symbol Synonym
|
SLRL2, OsSLRL2, OsGRAS-30, OsGRAS30, GRAS-30, GRAS30, OsLCG1
|
|
CGSNL Gene Name
|
LESS CHALK GRAIN 1
|
|
Gene Name Synonym
|
SLR1-like2, GRAS protein 30, SLENDER RICE LIKE 2, Less Chalk Grain1
|
|
Protein Name
|
GRAS PROTEIN 30
|
|
Allele
|
slrl2, slrl2-1, slrl2-2, LCG1-KO, LCG1-KO1, LCG1-KO2, LCG1-KO3
|
|
Chromosome No.
|
5
|
|
Explanation
|
TO:0001069: cooking quality trait. GO:1902040: positive regulation of seed dormancy process. PO:0030104: caryopsis fruit.
|
|
Trait Class
|
Vegetative organ - Leaf
Vegetative organ - Culm
Seed - Physiological traits - Dormancy
Seed - Physiological traits - Storage substances
Seed - Physiological traits - Taste
Character as QTL - Grain quality
Character as QTL - Germination
Other
|
|
Expression
|
|
|
Sequence/Locus
|
|
cDNA Accession No.
|
AK107256
|
|
MSU ID
|
LOC_Os05g49930.1
|
|
RAP ID
|
Os05g0574900
|
|
Links
|
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
|
INSD Accession List
(Test version)
|
Link to INSD Accession List
|
|
Map
|
|
Locate(cM)
|
|
|
Link map
|
Classical linkage map
|
|
References
|
|
Tu B., Zhang T., Liu P., Yang W., Zheng L., Dai Y., Wang H., Lin S., Zhang Z., Zheng X., Yuan M., Chen Y., Zhu X., Yuan H., Li T., Xiong J., Zhong Z., Chen W., Ma B., Qin P., Wang Y., Li S.
Plant Biotechnol. J. 2024
The LCG1-OsBP5/OsEBP89-Wx module regulates the grain chalkiness and taste quality in rice.
|
|
Wang J.D., Wang J., Huang L.C., Kan L.J., Wang C.X., Xiong M., Zhou P., Zhou L.H., Chen C., Zhao D.S., Fan X.L., Zhang C.Q., Zhou Y., Zhang L., Liu Q.Q., Li Q.F.
Nat Commun 2024 15(1) 4493
ABA-mediated regulation of rice grain quality and seed dormancy via the NF-YB1-SLRL2-bHLH144 Module.
|
|
Um T.Y., Lee H.Y., Lee S., Chang S.H., Chung P.J., Oh K.B., Kim J.K., Jang G., Choi Y.D.
Front Plant Sci 2018 9 1866
JASMONATE ZIM-DOMAIN PROTEIN 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.
|
|
Tang X., Zhang Z.-Y., Zhang W.-J., Zhao X.-M., Li X., Zhang D., Liu Q.-Q., Tang W.-H.
Plant Physiol. 2010 154(4) 1855-1870
Global gene profiling of laser-captured pollen mother cells indicates molecular pathways and gene subfamilies involved in rice meiosis.
|
|
Hirano K., Aya K., Hobo T., Sakakibara H., Kojima M., Rosalyn Angeles Shim, Hasegawa Y., Miyako Ueguchi-Tanaka, Matsuoka M.
Plant & cell physiology 2008 49(10) 1429-50
Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice.
|
|
Liu T,Gu JY,Xu CJ,Gao Y,An CC
Biochem. Biophys. Res. Commun. 2007 358 983-9
Overproduction of OsSLRL2 alters the development of transgenic Arabidopsis plants.
|
|
Itoh H., Shimada A., Miyako Ueguchi-Tanaka, Kamiya N., Hasegawa Y., Ashikari M., Matsuoka M.
Plant J. 2005 44(4) 669-79
Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice.
|
|
Tian C, Wan P, Sun S, Li J, Chen M.
Plant Mol. Biol. 2004 54 519-532
Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.
|
|
DB Reference
|
|
Gramene ID
|
-
|
|
Ontologies
|
|
Gene Ontology
|
regulation of polysaccharide biosynthetic process( GO:0032885 )
regulation of lipid biosynthetic process( GO:0046890 )
regulation of starch biosynthetic process( GO:0010581 )
membrane( GO:0016020 )
seed germination on parent plant( GO:0048623 )
regulation of seed germination( GO:0010029 )
DNA binding( GO:0003677 )
response to abscisic acid stimulus( GO:0009737 )
seed dormancy( GO:0010162 )
abscisic acid mediated signaling( GO:0009738 )
regulation of transcription( GO:0045449 )
regulation of gene expression( GO:0010468 )
gibberellic acid mediated signaling( GO:0009740 )
transcription( GO:0006350 )
nucleus( GO:0005634 )
|
|
Trait Ontology
|
seed quality( TO:0000162 )
seed dormancy( TO:0000253 )
amylose content( TO:0000196 )
abscisic acid sensitivity( TO:0000615 )
gel consistency( TO:0000211 )
setback viscosity( TO:0000412 )
vivipary( TO:0000619 )
plant height( TO:0000207 )
flag leaf lamina width( TO:0002758 )
chalky endosperm( TO:0000266 )
fruit flavor trait( TO:0002694 )
starch grain shape( TO:0002656 )
amylopectin content( TO:0000097 )
endosperm storage protein content( TO:0002653 )
fat and essential oil content( TO:0000604 )
secondary branch number( TO:0000557 )
starch grain synthesis( TO:0002658 )
starch content( TO:0000696 )
peak viscosity( TO:0000409 )
breakdown viscosity( TO:0000374 )
|
|
Plant Ontology
|
seed( PO:0009010 )
seed development stage( PO:0001170 )
pericarp( PO:0009084 )
|
|
Related Strains
|
|
-
|
|
Phenotype images
|
|
-
|
|
Last updated
|
|
Jan 21, 2025
|
Update info.