Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SUB1B
Gene Symbol Synonym Sub1B, OsSUB1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166
Gene Name Synonym submergence-1B, ethylene response factor 63, APETALA2/ethylene-responsive element binding protein 166
Protein Name
Allele Sub1B-1, Sub1B-2
Chromosome No. 9
Explanation AP005705. EU429442: OnSub1B-1 (Oryza nivara Sub1B-1), EU429443: OnSub1B-2 (Oryza nivara Sub1B-2), EU429444: OrSub1B-1 (Oryza rufipogon Sub1B-1). a group VII ethylene response factor (ERFVII).
Trait Class Tolerance and resistance - Stress tolerance
Character as QTL - Germination
cDNA Accession No. AK106057
MSU ID LOC_Os09g11480.1
RAP ID Os09g0287000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Cai Z., Dai Y., Jin X., Xu H., Huang Z., Xie Z., Yu X., Luo J.
Front Plant Sci 2024  15  1348295
Ambient temperature regulates root circumnutation in rice through the ethylene pathway: transcriptome analysis reveals key genes involved.
Loreti E., Perata P.
Front Genet 2023  14  1213839
ERFVII transcription factors and their role in the adaptation to hypoxia in Arabidopsis and crops.
Naithani S., Mohanty B., Elser J., D'Eustachio P., Jaiswal P.
Plants (Basel) 2023  12(11) 
Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (<i>Oryza sativa</i>).
Ma B., He S.J., Duan K.X., Yin C.C., Chen H., Yang C., Xiong Q., Song Q.X., Lu X., Chen H.W., Zhang W.K., Lu T.G., Chen S.Y., Zhang J.S.
Mol Plant 2013  6(6)  1830-48
Identification of rice ethylene-response mutants and characterization of MHZ7/OsEIN2 in distinct ethylene response and yield trait regulation.
Rashid M., Guangyuan H., Guangxiao Y., Hussain J., Xu Y.
Evol. Bioinform. Online 2012  8  321-355
AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots.
Fukao T,Yeung E,Bailey-Serres J
Plant Cell 2011  23(1)  412-27
The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice.
Jung KH,Seo YS,Walia H,Cao P,Fukao T,Canlas PE,Amonpant F,Bailey-Serres J,Ronald PC
Plant Physiol. 2010  152  1674-92
The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors.
Fukao,T., Harris,T. and Bailey-Serres,J.
Ann. Bot. 2009  103(2)  143-150
Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice
Fukao T., Julia Bailey-Serres
Proc. Natl. Acad. Sci. U.S.A. 2008  105(43)  16814-9
submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice.
Xu,K., Xu,X., Fukao,T., Canlas,P., Maghirang-Rodriguez,R., Heuer,S., Ismail,A.M., Bailey-Serres,J., Ronald,P.C. and Mackill,D.J.
Nature 2006  442(7103)  705-708
Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice
Nakano T, Suzuki K, Fujimura T, Shinshi H.
Plant Physiol. 2006  140(2)  411-32
Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
Fukao T, Xu K, Ronald PC, Bailey-Serres J.
Plant Cell 2006  18(8)  2021-2034
A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice.
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DB Reference
Gramene ID -
Gene Ontology response to temperature stimulus( GO:0009266 )
response to hypoxia( GO:0001666 )
response to deep water( GO:0030912 )
response to gravity( GO:0009629 )
seed germination( GO:0009845 )
DNA binding( GO:0003677 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
response to flooding( GO:0009413 )
response to ethylene stimulus( GO:0009723 )
Trait Ontology ethylene sensitivity( TO:0000173 )
submergence tolerance( TO:0000524 )
gravity response trait( TO:0002693 )
temperature response trait( TO:0000432 )
Plant Ontology 0 seed germination stage( PO:0007057 )
coleoptile emergence stage( PO:0007045 )
Related Strains
Phenotype images
Last updated
Jul 3, 2024