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Basic Information
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CGSNL Gene Symbol
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SUB1B
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Gene Symbol Synonym
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Sub1B, OsSUB1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166
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CGSNL Gene Name
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SUBMERGENCE 1B
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Gene Name Synonym
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submergence-1B, ethylene response factor 63, APETALA2/ethylene-responsive element binding protein 166
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Protein Name
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Allele
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Sub1B-1, Sub1B-2
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Chromosome No.
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9
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Explanation
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AP005705. EU429442: OnSub1B-1 (Oryza nivara Sub1B-1), EU429443: OnSub1B-2 (Oryza nivara Sub1B-2), EU429444: OrSub1B-1 (Oryza rufipogon Sub1B-1). a group VII ethylene response factor (ERFVII).
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Trait Class
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Tolerance and resistance - Stress tolerance
Character as QTL - Germination
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK106057
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MSU ID
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LOC_Os09g11480.1
LOC_Os09g11480.2
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RAP ID
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Os09g0287000
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Cai Z., Dai Y., Jin X., Xu H., Huang Z., Xie Z., Yu X., Luo J.
Front Plant Sci 2024 15 1348295
Ambient temperature regulates root circumnutation in rice through the ethylene pathway: transcriptome analysis reveals key genes involved.
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Loreti E., Perata P.
Front Genet 2023 14 1213839
ERFVII transcription factors and their role in the adaptation to hypoxia in Arabidopsis and crops.
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Naithani S., Mohanty B., Elser J., D'Eustachio P., Jaiswal P.
Plants (Basel) 2023 12(11)
Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (<i>Oryza sativa</i>).
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Ma B., He S.J., Duan K.X., Yin C.C., Chen H., Yang C., Xiong Q., Song Q.X., Lu X., Chen H.W., Zhang W.K., Lu T.G., Chen S.Y., Zhang J.S.
Mol Plant 2013 6(6) 1830-48
Identification of rice ethylene-response mutants and characterization of MHZ7/OsEIN2 in distinct ethylene response and yield trait regulation.
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Rashid M., Guangyuan H., Guangxiao Y., Hussain J., Xu Y.
Evol. Bioinform. Online 2012 8 321-355
AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots.
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Fukao T,Yeung E,Bailey-Serres J
Plant Cell 2011 23(1) 412-27
The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice.
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Jung KH,Seo YS,Walia H,Cao P,Fukao T,Canlas PE,Amonpant F,Bailey-Serres J,Ronald PC
Plant Physiol. 2010 152 1674-92
The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors.
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Fukao,T., Harris,T. and Bailey-Serres,J.
Ann. Bot. 2009 103(2) 143-150
Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice
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Fukao T., Julia Bailey-Serres
Proc. Natl. Acad. Sci. U.S.A. 2008 105(43) 16814-9
submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice.
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Xu,K., Xu,X., Fukao,T., Canlas,P., Maghirang-Rodriguez,R., Heuer,S., Ismail,A.M., Bailey-Serres,J., Ronald,P.C. and Mackill,D.J.
Nature 2006 442(7103) 705-708
Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice
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Nakano T, Suzuki K, Fujimura T, Shinshi H.
Plant Physiol. 2006 140(2) 411-32
Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
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Fukao T, Xu K, Ronald PC, Bailey-Serres J.
Plant Cell 2006 18(8) 2021-2034
A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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DNA binding( GO:0003677 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
response to flooding( GO:0009413 )
response to ethylene stimulus( GO:0009723 )
response to gravity( GO:0009629 )
seed germination( GO:0009845 )
response to hypoxia( GO:0001666 )
response to deep water( GO:0030912 )
response to temperature stimulus( GO:0009266 )
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Trait Ontology
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ethylene sensitivity( TO:0000173 )
submergence tolerance( TO:0000524 )
gravity response trait( TO:0002693 )
temperature response trait( TO:0000432 )
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Plant Ontology
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0 seed germination stage( PO:0007057 )
coleoptile emergence stage( PO:0007045 )
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Related Strains
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Phenotype images
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Last updated
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Jul 3, 2024
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Update info.