Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SUB1A
Gene Symbol Synonym Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
Gene Name Synonym submergence-1A
Protein Name
Allele Sub1A-1, Sub1A-2, Sub1A-3, SUB1A1, SUB1A2, SUB1A-1, SUB1A-2
Chromosome No. 9
Explanation DQ011598b. Sub1A is absent from all japonica and some indica accessions, all of which are intolerant to submergence. FR720457-FR720461 (O. nivara and O. rufipogon). a group VII ethylene response factor (ERFVII).
Trait Class Tolerance and resistance - Stress tolerance
cDNA Accession No. -
Links -
INSD Accession List
(Test version)
Link map Classical linkage map
Lin C.C., Chao Y.T., Chen W.C., Ho H.Y., Chou M.Y., Li Y.R., Wu Y.L., Yang H.A., Hsieh H., Lin C.S., Wu F.H., Chou S.J., Jen H.C., Huang Y.H., Irene D., Wu W.J., Wu J.L., Gibbs D.J., Ho M.C., Shih M.C.
Proc. Natl. Acad. Sci. U.S.A. 2019  116(8)  3300-3309
Regulatory cascade involving transcriptional and N-end rule pathways in rice under submergence.
Zhao Q., Feng Q., Lu H., Li Y., Wang A., Tian Q., Zhan Q., Lu Y., Zhang L., Huang T., Wang Y., Fan D., Zhao Y., Wang Z., Zhou C., Chen J., Zhu C., Li W., Weng Q., Xu Q., Wang Z.X., Wei X., Han B., Huang X.
Nat. Genet. 2018  50(2)  278-284
Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.
Sharma N., Dang T.M., Singh N., Ruzicic S., Mueller-Roeber B., Baumann U., Heuer S.
Rice (N Y) 2018  11(1)  2
Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice.
Singh P., Sinha A.K.
Plant Cell 2016   
A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN ACTIVATED PROTEIN KINASE 3 Imparts submergence tolerance in Rice.
Niroula R.K., Pucciariello C., Ho V.T., Novi G., Fukao T., Perata P.
Plant J. 2012  72(2)  282-93
SUB1A-dependent and -independent mechanisms are involved in the flooding tolerance of wild rice species.
Septiningsih E.M., Sanchez D.L., Singh N., Sendon P.M.D., Pamplona A.M., Heuer S., Mackill D.J.
Theoretical and Applied Genetics 2012  124  867-874
Identifying novel QTLs for submergence tolerance in rice cultivars IR72 and Madabaru
Gibbs D.J., Lee S.C., Isa N.M., Gramuglia S., Fukao T., Bassel G.W., Correia C.S., Corbineau F., Theodoulou F.L., Bailey-Serres J., Holdsworth M.J.
Nature 2011  479(7373)  415-8
Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants.
Fukao T,Yeung E,Bailey-Serres J
Plant Cell 2011  23(1)  412-27
The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice.
Parlanti S., Kudahettige N.P., Lombardi L., Mensuali-Sodi A., Alpi A., Perata P., Pucciariello C.
Ann. Bot. 2011  107(8)  1335-43
Distinct mechanisms for aerenchyma formation in leaf sheaths of rice genotypes displaying a quiescence or escape strategy for flooding tolerance.
Fukao,T., Harris,T. and Bailey-Serres,J.
Ann. Bot. 2009  103(2)  143-150
Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice
Fukao T., Julia Bailey-Serres
Proc. Natl. Acad. Sci. U.S.A. 2008  105(43)  16814-9
submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice.
Xu,K., Xu,X., Fukao,T., Canlas,P., Maghirang-Rodriguez,R., Heuer,S., Ismail,A.M., Bailey-Serres,J., Ronald,P.C. and Mackill,D.J.
Nature 2006  442(7103)  705-708
Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice
Fukao T, Xu K, Ronald PC, Bailey-Serres J.
Plant Cell 2006  18(8)  2021-2034
A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice.
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DB Reference
Gramene ID -
Gene Ontology DNA binding( GO:0003677 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
response to flooding( GO:0009413 )
Trait Ontology submergence sensitivity( TO:0000286 )
flooding related trait( TO:0000114 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Aug 14, 2019

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