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Basic Information
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CGSNL Gene Symbol
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SPL12
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Gene Symbol Synonym
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OsSPL12, DLN176, OsDLN176
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CGSNL Gene Name
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RICE SQUAMOSA PROMOTER-BINDING-LIKE 12
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Gene Name Synonym
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Squamosa promoter-binding-like protein 12, SQUAMOSA Promoter-Binding Protein-Like 12a, DLN repressor 176, DLN motif protein 176
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Protein Name
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RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 12
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Allele
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osspl12
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Chromosome No.
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6
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Explanation
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A2YGR5. OsmiR156 target gene. GO:2000280: regulation of root development. GO:1902347: response to strigolactone.
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Trait Class
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Vegetative organ - Root
Other
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK061641
AK073179
AK102136
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MSU ID
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LOC_Os06g49010.1
LOC_Os06g49010.2
LOC_Os06g49010.3
LOC_Os06g49010.4
LOC_Os06g49010.5
LOC_Os06g49010.6
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RAP ID
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Os06g0703500
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Feng M., Luo W., Luo S., Miao R., Gu M., Li S., Xing X., Zhang J., Qian J., Liu X., Zhou C., Sun Q., Luo T., Chen N., Ren Y., Cheng Z., Lei C., Zhao Z., Zhu S., Wang X., Guo X., Lin Q., Wan J.
Plant Biotechnol. J. 2025
Strigolactones Regulate Sugar Allocation to Control Rice Tillering and Root Development via the OsSPL14-OsSHR1-OsSWEET16 Pathway.
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Zhang L.L., Huang Y.Y., Zheng Y.P., Liu X.X., Zhou S.X., Yang X.M., Liu S.L., Li Y., Li J.L., Zhao S.L., Wang H., Ji Y.P., Zhang J.W., Pu M., Zhao Z.X., Fan J., Wang W.M.
Plant J. 2022 110(1) 166-178
Osa-miR535 targets SQUAMOSA promoter binding protein-like 4 to regulate blast disease resistance in rice.
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Desai J.S., Lawas L.M.F., Valente A.M., Leman A.R., Grinevich D.O., Jagadish S.V.K., Doherty C.J.
Proc. Natl. Acad. Sci. U.S.A. 2021 118(25)
Warm nights disrupt transcriptome rhythms in field-grown rice panicles.
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Shao Y., Zhou H.Z., Wu Y., Zhang H., Lin J., Jiang X., He Q., Zhu J., Li Y., Yu H., Mao C.
Plant Cell 2019 31(6) 1257-1275
OsSPL3, an SBP-Domain Protein, Regulates crown root Development in Rice.
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Zhu J., Li Y., Lin J., Wu Y., Guo H., Shao Y., Wang F., Wang X., Mo X., Zheng S., Yu H., Mao C.
Plant J. 2019
crd1, an Xpo1 domain protein, regulates miRNA accumulation and crown root development in rice.
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Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019 20(7)
Analysis of Rice Proteins with DLN repressor Motif/S.
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Liu Q., Shen G., Peng K., Huang Z., Tong J., Kabir M.H., Wang J., Zhang J., Qin G., Xiao L.
J Integr Plant Biol 2015
A T-DNA insertion mutant Osmtd1 was altered in architecture by upregulating MicroRNA156f in rice.
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Xie K., Shen J., Hou X., Yao J., Li X., Xiao J., Xiong L.
Plant Physiol. 2012 158(3) 1382-94
Gradual increase of miR156 regulates temporal expression changes of numerous genes during leaf development in rice.
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Xie K, Wu C, Xiong L.
Plant Physiol. 2006 142(1) 280-293
Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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regulation of transcription( GO:0045449 )
DNA binding( GO:0003677 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
root development( GO:0048364 )
zinc ion binding( GO:0008270 )
circadian rhythm( GO:0007623 )
temperature compensation of the circadian clock( GO:0010378 )
response to temperature stimulus( GO:0009266 )
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Trait Ontology
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root development trait( TO:0000656 )
temperature response trait( TO:0000432 )
root length( TO:0000227 )
crown root number( TO:0002685 )
tiller number( TO:0000346 )
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Plant Ontology
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root development stage( PO:0007520 )
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Related Strains
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-
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Phenotype images
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-
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Last updated
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Jan 8, 2026
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Update info.