Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol SST
Gene Symbol Synonym OsSPL10, SPL10, OsSST, SST/OsSPL10
CGSNL Gene Name SEEDLING SALT TOLERANT
Gene Name Synonym Squamosa promoter-binding-like protein 10, SQUAMOSA-Promoter Binding Protein Like 10, seedling salt tolerant
Protein Name RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 10
Allele sst, spl10, spl10-1, spl10-2, spl10-3
Chromosome No. 6
Explanation A2YFT9(indica), Q0DAE8(japonica). The SST activity affects rice rhizosphere microbiome assembly. (Lian et al. 2020) GO:2000377: regulation of reactive oxygen species metabolic process. GO:1901001: negative regulation of response to salt stress. GO:1902883: negative regulation of response to oxidative stress. GO:2000296: negative regulation of hydrogen peroxide catabolic process.
Trait Class Tolerance and resistance - Stress tolerance
Other
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Os06g44860.1
RAP ID Os06g0659100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Fang C., Nie Y., Zhu M., Yu X., Jia L., Li J., Shu X., Zhu T., Liang W.
Rice (N Y) 2025  18(1)  113
SQUAMOSA-promoter binding protein Like 10/14 (OsSPL10/14) Regulate salt tolerance by Modulating Reactive Oxygen Species Homeostasis in Rice (Oryza Sativa L.).
Dai D., Zhang H., He L., Chen J., Du C., Liang M., Zhang M., Wang H., Ma L.
Int J Mol Sci 2022  23(16) 
<i>Panicle Apical Abortion 7</i> Regulates Panicle Development in Rice (<i>Oryza sativa</i> L.).
Lian T., Huang Y., Xie X., Huo X., Shahid M.Q., Tian L., Lan T., Jin J.
mSystems 2020  5(6) 
Rice <i>SST</i> Variation Shapes the Rhizosphere Bacterial Community, Conferring Tolerance to Salt Stress through Regulating Soil Metabolites.
Xie K, Wu C, Xiong L.
Plant Physiol. 2006  142(1)  280-293
Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice.
DB Reference
Gramene ID -
Ontologies
Gene Ontology hydrogen peroxide catabolic process( GO:0042744 )
response to oxidative stress( GO:0006979 )
phenylpropanoid biosynthetic process( GO:0009699 )
hormone-mediated signaling( GO:0009755 )
response to salt stress( GO:0009651 )
transcription( GO:0006350 )
nucleus( GO:0005634 )
DNA binding( GO:0003677 )
zinc ion binding( GO:0008270 )
regulation of transcription( GO:0045449 )
Trait Ontology salt tolerance( TO:0006001 )
potassium content( TO:0000609 )
sodium content( TO:0000608 )
sodium concentration( TO:0000526 )
potassium concentration( TO:0000513 )
leaf rolling tolerance( TO:0002662 )
relative plant height( TO:0001034 )
hydrogen peroxide content( TO:0000605 )
oxidative stress( TO:0002657 )
Plant Ontology root( PO:0009005 )
stem( PO:0009047 )
Related Strains
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Phenotype images
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Last updated
Aug 1, 2026

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