Gene - Detail
Detail of Gene
Basic Information | |
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CGSNL Gene Symbol | SST |
Gene Symbol Synonym | OsSPL10, SPL10, OsSST, SST/OsSPL10 |
CGSNL Gene Name | SEEDLING SALT TOLERANT |
Gene Name Synonym | Squamosa promoter-binding-like protein 10, seedling salt tolerant |
Protein Name | RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 10 |
Allele | sst |
Chromosome No. | 6 |
Explanation | A2YFT9(indica), Q0DAE8(japonica). The SST activity affects rice rhizosphere microbiome assembly. (Lian et al. 2020) |
Trait Class |
Tolerance and resistance - Stress tolerance
Other |
Expression | |
Sequence/Locus | |
cDNA Accession No. | - |
MSU ID |
LOC_Os06g44860.1
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RAP ID |
Os06g0659100 |
Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
INSD Accession List (Test version) |
Link to INSD Accession List |
Map | |
Locate(cM) | |
Link map | Classical linkage map |
References | |
Dai D., Zhang H., He L., Chen J., Du C., Liang M., Zhang M., Wang H., Ma L.
Int J Mol Sci 2022 23(16) <i>Panicle Apical Abortion 7</i> Regulates Panicle Development in Rice (<i>Oryza sativa</i> L.).
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Lian T., Huang Y., Xie X., Huo X., Shahid M.Q., Tian L., Lan T., Jin J.
mSystems 2020 5(6) Rice <i>SST</i> Variation Shapes the Rhizosphere Bacterial Community, Conferring Tolerance to Salt Stress through Regulating Soil Metabolites.
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Xie K, Wu C, Xiong L.
Plant Physiol. 2006 142(1) 280-293 Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice.
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DB Reference | |
Gramene ID | - |
Ontologies | |
Gene Ontology |
regulation of transcription( GO:0045449 )
zinc ion binding( GO:0008270 ) DNA binding( GO:0003677 ) nucleus( GO:0005634 ) response to salt stress( GO:0009651 ) transcription( GO:0006350 ) |
Trait Ontology |
salt tolerance( TO:0006001 )
potassium content( TO:0000609 ) sodium content( TO:0000608 ) sodium concentration( TO:0000526 ) potassium concentration( TO:0000513 ) |
Plant Ontology | - |
Related Strains | |
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Phenotype images | |
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Last updated | |
Jan 18, 2023 |