Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol AMY2A
Gene Symbol Synonym Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A
CGSNL Gene Name ALPHA-AMYLASE 2A
Gene Name Synonym Alpha-amylase2A, Alpha-amylase isozyme 2A, Alpha-amylase isozyme C2, Alpha-amylase-2A, Amylase-4
Protein Name ALPHA-AMYLASE 2A
Allele
Chromosome No. 6
Explanation EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. Q0D9J1(japonica), A2YGY2(indica). BGIOSGA023598 (indica). TO:0000949: seedling growth and development trait. GO:0090351: seedling development.
Trait Class Biochemical character
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
Expression
Sequence/Locus
cDNA Accession No. AK059671
MSU ID LOC_Os06g49970.2
RAP ID Os06g0713800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Tang X., Zhong W., Wang K., Gong X., Xia Y., Nong J., Xiao L., Xia S.
Int J Mol Sci 2023  24(16) 
Regulation of Grain Chalkiness and Starch Metabolism by FLO2 interaction factor 3, a bHLH transcription factor in <i>Oryza sativa</i>.
Wang Y., Wang Y., Yang R., Wang F., Fu J., Yang W., Bai T., Wang S., Yin H.
J Zhejiang Univ Sci B 2021  22(12)  1002-1021
Effects of gibberellin priming on seedling emergence and transcripts involved in mesocotyl elongation in rice under deep direct-seeding conditions.
Wang G., Li X., Li Y., Ye N., Li H., Zhang J.
J. Exp. Bot. 2021  72(4)  1384-1398
Comprehensive epigenome and transcriptome analysis of carbon reserve remobilization in indica and japonica rice stems under moderate soil drying.
Wada H., Masumoto-Kubo C., Tsutsumi K., Nonami H., Tanaka F., Okada H., Erra-Balsells R., Hiraoka K., Nakashima T., Hakata M., Morita S.
PLoS ONE 2017  12(7)  e0181272
Turgor-responsive starch phosphorylation in Oryza sativa stems: A primary event of starch degradation associated with grain-filling ability.
Hwang YS, Thomas BR, Rodriguez RL.
Plant Mol. Biol. 1999  40(6)  911-920
Differential expression of rice alpha-amylase genes during seedling development under anoxia.
Sheu JJ, Yu TS, Tong WF, Yu SM.
J. Biol. Chem. 1996  271(43)  26998-7004
Carbohydrate starvation stimulates differential expression of rice alpha-amylase genes that is modulated through complicated transcriptional and posttranscriptional processes.
Parco, A., G. Magpantay, G. Second, R. Rodriguez and N. Huang
RGN 1994  11  137-140.
Restriction fragment length polymorphism and linkage analysis of rice alpha-amylase gene family.
Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994  138  1251-1274.
Saturated molecular map of the rice genome based on an interspecific backcross population.
Rodriguez, R.L., N. Huang, T. Sutliff, S. Ranjhan, E. Karrer and J. Litts
Rice Genetics. II. IRRI, Manila, Philippines. 1991    417-429.
Organization, structure and expression of the alpha-amylase multigene family.
Ranjhan, S., J.C. Litts, M.R. Foolad and R.L. Rodriguez
Theor. Appl. Genet. 1991  82  481-488.
Chromosomal localization and genomic organization of alpha-amylase genes in rice (Oryza sativa L.).
Huang,N., Sutliff,T.D., Litts,J.C. and Rodriguez,R.L.
Plant Mol. Biol. 1990  14(5)  655-668
Classification and characterization of the rice alpha-amylase multigene family.
TextPresso Search Search textpresso for AMY2A ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060045
Ontologies
Gene Ontology response to water deprivation( GO:0009414 )
response to gibberellin stimulus( GO:0009739 )
internode patterning( GO:0080006 )
alpha-amylase activity( GO:0004556 )
calcium ion binding( GO:0005509 )
carbohydrate metabolic process( GO:0005975 )
starch catabolic process( GO:0005983 )
sucrose catabolic process( GO:0005987 )
cytoplasmic membrane-bounded vesicle( GO:0016023 )
secretion by cell( GO:0032940 )
Trait Ontology mesocotyl length( TO:0000544 )
gibberellic acid sensitivity( TO:0000166 )
drought tolerance( TO:0000276 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Nov 28, 2023


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