Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SPL4
Gene Symbol Synonym OsSPL4
Gene Name Synonym Squamosa promoter-binding-like protein 4
Allele spl4-d3, spl4-d15, osspl4, osspl4-1, osspl4-2
Chromosome No. 2
Explanation Q6H509. HQ858810. PRJNA773224. SBP transcription factor. TO:0000975: grain width.
Trait Class Other
Seed - Morphological traits - Grain shape
Tolerance and resistance - Disease resistance
Character as QTL - Yield and productivity
Reproductive organ - Panicle, Mode of branching
cDNA Accession No. AK061484
MSU ID LOC_Os02g07780.1
RAP ID Os02g0174100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Zhang L.L., Huang Y.Y., Zheng Y.P., Liu X.X., Zhou S.X., Yang X.M., Liu S.L., Li Y., Li J.L., Zhao S.L., Wang H., Ji Y.P., Zhang J.W., Pu M., Zhao Z.X., Fan J., Wang W.M.
Plant J. 2022  110(1)  166-178
Osa-miR535 targets SQUAMOSA promoter binding protein-like 4 to regulate blast disease resistance in rice.
Pasion E.A., Badoni S., Misra G., Anacleto R., Parween S., Kohli A., Sreenivasulu N.
Plant Biotechnol. J. 2021   
OsTPR boosts the superior grains through increase in upper secondary rachis branches without incurring a grain quality penalty.
Hu J., Huang L., Chen G., Liu H., Zhang Y., Zhang R., Zhang S., Liu J., Hu Q., Hu F., Wang W., Ding Y.
Rice (N Y) 2021  14(1)  90
The Elite Alleles of OsSPL4 Regulate grain size and Increase Grain Yield in Rice.
Zhu J., Li Y., Lin J., Wu Y., Guo H., Shao Y., Wang F., Wang X., Mo X., Zheng S., Yu H., Mao C.
Plant J. 2019   
crd1, an Xpo1 domain protein, regulates miRNA accumulation and crown root development in rice.
Yilmaz,A., Nishiyama,M.Y. Jr., Fuentes,B.G., Souza,G.M., Janies,D., Gray,J. and Grotewold,E.
Plant Physiol. 2009  149(1)  171-180
GRASSIUS: a platform for comparative regulatory genomics across the grasses
Xie K, Wu C, Xiong L.
Plant Physiol. 2006  142(1)  280-293
Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice.
TextPresso Search Search textpresso for SPL4 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology seed development( GO:0048316 )
regulation of transcription( GO:0045449 )
zinc ion binding( GO:0008270 )
transcription( GO:0006350 )
nucleus( GO:0005634 )
DNA binding( GO:0003677 )
defense response to fungus( GO:0050832 )
regulation of cell division( GO:0051302 )
inflorescence development( GO:0010229 )
Trait Ontology blast disease( TO:0000074 )
hydrogen peroxide content( TO:0000605 )
inflorescence development trait( TO:0000621 )
grain number( TO:0002759 )
filled grain number( TO:0000447 )
grain weight( TO:0000590 )
grain length( TO:0000734 )
grain thickness( TO:0000399 )
seed density( TO:0000612 )
1000-seed weight( TO:0000382 )
grain yield per plant( TO:0000449 )
inflorescence branching( TO:0000050 )
secondary branching of inflorescence( TO:0000142 )
primary branching of inflorescence( TO:0000052 )
spikelet number( TO:0000456 )
seed set percent( TO:0000455 )
primary branch number( TO:0000547 )
secondary branch number( TO:0000557 )
grain size( TO:0000397 )
grain yield( TO:0000396 )
seed development trait( TO:0000653 )
Plant Ontology seed development stage( PO:0001170 )
inflorescence development stage( PO:0001083 )
Related Strains
Phenotype images
Last updated
Jun 29, 2022