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Basic Information
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CGSNL Gene Symbol
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SPL4
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Gene Symbol Synonym
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OsSPL4
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CGSNL Gene Name
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RICE SQUAMOSA PROMOTER-BINDING-LIKE 4
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Gene Name Synonym
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Squamosa promoter-binding-like protein 4
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Protein Name
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RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4
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Allele
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spl4-d3, spl4-d15, osspl4, osspl4-1, osspl4-2
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Chromosome No.
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2
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Explanation
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Q6H509. HQ858810. PRJNA773224. SBP transcription factor. TO:0000975: grain width.
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Trait Class
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Other
Seed - Morphological traits - Grain shape
Tolerance and resistance - Disease resistance
Character as QTL - Yield and productivity
Reproductive organ - Panicle, Mode of branching
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK061484
AK068702
AK066057
AK062651
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MSU ID
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LOC_Os02g07780.1
LOC_Os02g07780.2
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RAP ID
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Os02g0174100
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Zhang L.L., Huang Y.Y., Zheng Y.P., Liu X.X., Zhou S.X., Yang X.M., Liu S.L., Li Y., Li J.L., Zhao S.L., Wang H., Ji Y.P., Zhang J.W., Pu M., Zhao Z.X., Fan J., Wang W.M.
Plant J. 2022 110(1) 166-178
Osa-miR535 targets SQUAMOSA promoter binding protein-like 4 to regulate blast disease resistance in rice.
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Pasion E.A., Badoni S., Misra G., Anacleto R., Parween S., Kohli A., Sreenivasulu N.
Plant Biotechnol. J. 2021
OsTPR boosts the superior grains through increase in upper secondary rachis branches without incurring a grain quality penalty.
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Hu J., Huang L., Chen G., Liu H., Zhang Y., Zhang R., Zhang S., Liu J., Hu Q., Hu F., Wang W., Ding Y.
Rice (N Y) 2021 14(1) 90
The Elite Alleles of OsSPL4 Regulate grain size and Increase Grain Yield in Rice.
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Zhu J., Li Y., Lin J., Wu Y., Guo H., Shao Y., Wang F., Wang X., Mo X., Zheng S., Yu H., Mao C.
Plant J. 2019
crd1, an Xpo1 domain protein, regulates miRNA accumulation and crown root development in rice.
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Yilmaz,A., Nishiyama,M.Y. Jr., Fuentes,B.G., Souza,G.M., Janies,D., Gray,J. and Grotewold,E.
Plant Physiol. 2009 149(1) 171-180
GRASSIUS: a platform for comparative regulatory genomics across the grasses
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Xie K, Wu C, Xiong L.
Plant Physiol. 2006 142(1) 280-293
Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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seed development( GO:0048316 )
regulation of transcription( GO:0045449 )
zinc ion binding( GO:0008270 )
transcription( GO:0006350 )
nucleus( GO:0005634 )
DNA binding( GO:0003677 )
defense response to fungus( GO:0050832 )
regulation of cell division( GO:0051302 )
inflorescence development( GO:0010229 )
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Trait Ontology
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blast disease( TO:0000074 )
hydrogen peroxide content( TO:0000605 )
inflorescence development trait( TO:0000621 )
grain number( TO:0002759 )
filled grain number( TO:0000447 )
grain weight( TO:0000590 )
grain length( TO:0000734 )
grain thickness( TO:0000399 )
seed density( TO:0000612 )
1000-seed weight( TO:0000382 )
grain yield per plant( TO:0000449 )
inflorescence branching( TO:0000050 )
secondary branching of inflorescence( TO:0000142 )
primary branching of inflorescence( TO:0000052 )
spikelet number( TO:0000456 )
seed set percent( TO:0000455 )
primary branch number( TO:0000547 )
secondary branch number( TO:0000557 )
grain size( TO:0000397 )
grain yield( TO:0000396 )
seed development trait( TO:0000653 )
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Plant Ontology
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seed development stage( PO:0001170 )
inflorescence development stage( PO:0001083 )
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Related Strains
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-
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Phenotype images
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-
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Last updated
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Jun 29, 2022
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Update info.