Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol AMY3E
Gene Symbol Synonym Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E
Gene Name Synonym Alpha-amylase3E, Alpha-amylase isozyme 3E precursor, Alpha-amylase isozyme 3E, Alpha-amylase-3E, Amylase-9, Alpha-amylase-3D
Chromosome No. 8
Explanation EC= 1,4-alpha-D-glucan glucanohydrolase. M59352. P27934. AMY1.4 in Wang et al. 2021. OsAmy3C in Farooq et al. 2022. TO:0000949: seedling growth and development trait. GO:0090351: seedling development.
Trait Class Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Dormancy
Character as QTL - Germination
Biochemical character
cDNA Accession No. AK064300
MSU ID LOC_Os08g36900.1
RAP ID Os08g0473600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Farooq M., Khan M.A., Zhao D.D., Asif S., Kim E.G., Jang Y.H., Park J.R., Lee I.J., Kim K.M.
Front Plant Sci 2022  13  1041181
Extrinsic role of gibberellin mitigating salinity effect in different rice genotypes.
Huang Y., Li J., Huang Q.
Sci Rep 2022  12(1)  17847
Physiologic and molecular responses of indica-japonica subspecies tetraploid rice seed germination to ion beams.
Nie L., Song S., Yin Q., Zhao T., Liu H., He A., Wang W.
Rice (N Y) 2022  15(1)  19
Enhancement in Seed Priming-Induced Starch Degradation of Rice Seed Under Chilling Stress via GA-Mediated alpha-amylase Expression.
He Y., Zhu M., Li Z., Jiang S., He Z., Xu S., Chen X., Hu Z., Zhang Z.
Int J Mol Sci 2021  22(12) 
<i>IPA1</i> Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and <i>WRKY</i> Pathways.
Wang Y., Wang Y., Yang R., Wang F., Fu J., Yang W., Bai T., Wang S., Yin H.
J Zhejiang Univ Sci B 2021  22(12)  1002-1021
Effects of gibberellin priming on seedling emergence and transcripts involved in mesocotyl elongation in rice under deep direct-seeding conditions.
Liu X., Luo J., Li T., Yang H., Wang P., Su L., Zheng Y., Bao C., Zhou C.
Rice (N Y) 2021  14(1)  25
SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other Histone Modifications.
Suriyasak C., Oyama Y., Ishida T., Mashiguchi K., Yamaguchi S., Hamaoka N., Iwaya-Inoue M., Ishibashi Y.
Sci Rep 2020  10(1)  17378
Mechanism of delayed seed germination caused by high temperature during grain filling in rice (Oryza sativa L.).
Liu L., Xia W., Li H., Zeng H., Wei B., Han S., Yin C.
Front Plant Sci 2018  9  275
Salinity Inhibits Rice Seed Germination by Reducing alpha-amylase Activity via Decreased Bioactive Gibberellin Content.
Morino K., Kimizu M., Fujiwara M.
Proteome Sci 2016  15  6
Disulfide proteomics of rice cultured cells in response to OsRacl and probenazole-related immune signaling pathway in rice.
Wu C.S., Kuo W.T., Chang C.Y., Kuo J.Y., Tsai Y.T., Yu S.M., Wu H.T., Chen P.W.
Plant Mol. Biol. 2014  85(1-2)  147-61
The modified rice alphaAmy8 promoter confers high-level foreign gene expression in a novel hypoxia-inducible expression system in transgenic rice seedlings.
Kitajima A, Asatsuma S, Okada H, Hamada Y, Kaneko K, Nanjo Y, Kawagoe Y, Toyooka K, Matsuoka K, Takeuchi M, Nakano A, Mitsui T.
Plant Cell 2009  21(9)  2844-58.
The rice alpha-amylase glycoprotein is targeted from the Golgi apparatus through the secretory pathway to the plastids.
Yamaguchi, Takeshi
Plant Physiol. 2007  144(1)  258-277
Comprehensive Expression Profiling of Rice Grain Filling-Related Genes under High Temperature Using DNA Microarray.
Chen PW, Chiang CM, Tseng TH, Yu SM.
Plant Cell 2006  18(9)  2326-40
Interaction between rice MYBGA and the gibberellin response element controls tissue-specific sugar sensitivity of alpha-amylase genes.
Hwang YS, Thomas BR, Rodriguez RL.
Plant Mol. Biol. 1999  40(6)  911-920
Differential expression of rice alpha-amylase genes during seedling development under anoxia.
Hwang, Y.-S., E.E. Karrer, B.R. Thomas, L. Chen and R.L. Rodriguez
Plant Mol. Biol. 1998  36  331-341.
Three cis-elements required for rice alpha-amylase Amy3D expression during sugar starvation.
Yamaguchi, J.
Breeding Science 1998  48  365-370.
Analysis of embryo-specific alpha-amylase using isolated mature rice embryos.
Mitsui T, Itoh K.
Trends Plant Sci. 1997  2(7)  255-261
The alpha-amylase multigene family.
Sheu JJ, Yu TS, Tong WF, Yu SM.
J. Biol. Chem. 1996  271(43)  26998-7004
Carbohydrate starvation stimulates differential expression of rice alpha-amylase genes that is modulated through complicated transcriptional and posttranscriptional processes.
Umemura, T., M. Kuroyanagi, P. Perata, Y. Futsuhara and J. Yamaguchi
Breeding Science 1996  46(Suppl. 2)  31
Functional promoter analysis of rice alpha-amylase gene, RAmy3D (part 2).
Parco, A., G. Magpantay, G. Second, R. Rodriguez and N. Huang
RGN 1994  11  137-140.
Restriction fragment length polymorphism and linkage analysis of rice alpha-amylase gene family.
Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994  138  1251-1274.
Saturated molecular map of the rice genome based on an interspecific backcross population.
Yu,S.M., Tzou,W.S., Lo,W.S., Kuo,Y.H., Lee,H.T. and Wu,R.
Gene 1992  122(2)  247-253
Regulation of alpha-amylase-encoding gene expression in germinating seeds and cultured cells of rice
Ranjhan, S., J.C. Litts, M.R. Foolad and R.L. Rodriguez
Theor. Appl. Genet. 1991  82  481-488.
Chromosomal localization and genomic organization of alpha-amylase genes in rice (Oryza sativa L.).
Rodriguez, R.L., N. Huang, T. Sutliff, S. Ranjhan, E. Karrer and J. Litts
Rice Genetics. II. IRRI, Manila, Philippines. 1991    417-429.
Organization, structure and expression of the alpha-amylase multigene family.
Huang,N., Sutliff,T.D., Litts,J.C. and Rodriguez,R.L.
Plant Mol. Biol. 1990  14(5)  655-668
Classification and characterization of the rice alpha-amylase multigene family.
Huang,N., Koizumi,N., Reinl,S. and Rodriguez,R.L.
Nucleic Acids Res. 1990  18(23)  7007-7014
Structural organization and differential expression of rice alpha-amylase genes.
TextPresso Search Search textpresso for AMY3E ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0061336
Gene Ontology response to ionizing radiation( GO:0010212 )
response to salt stress( GO:0009651 )
sugar mediated signaling( GO:0010182 )
response to cold( GO:0009409 )
internode patterning( GO:0080006 )
seed germination( GO:0009845 )
response to heat( GO:0009408 )
alpha-amylase activity( GO:0004556 )
calcium ion binding( GO:0005509 )
carbohydrate metabolic process( GO:0005975 )
cytoplasmic membrane-bounded vesicle( GO:0016023 )
starch catabolic process( GO:0005983 )
sucrose catabolic process( GO:0005987 )
response to hypoxia( GO:0001666 )
response to gibberellin stimulus( GO:0009739 )
response to redox state( GO:0051775 )
Trait Ontology gibberellic acid sensitivity( TO:0000166 )
oxygen sensitivity( TO:0000015 )
heat tolerance( TO:0000259 )
mesocotyl length( TO:0000544 )
cold tolerance( TO:0000303 )
salt tolerance( TO:0006001 )
radiation response trait( TO:0000161 )
Plant Ontology 0 seed germination stage( PO:0007057 )
Related Strains
Phenotype images
Last updated
Feb 13, 2023