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Basic Information
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CGSNL Gene Symbol
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AMY3D
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Gene Symbol Synonym
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Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D
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CGSNL Gene Name
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ALPHA-AMYLASE 3D
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Gene Name Synonym
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Alpha-amylase3D, Alpha-amylase isozyme 3D precursor, Alpha-amylase isozyme 3D, Alpha-amylase-3D, Amylase-8
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Protein Name
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ALPHA-AMYLASE 3D
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Allele
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Chromosome No.
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8
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Explanation
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EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. M59351. P27933. M24287. AU166291, AU166292, AU068387, AU166535.
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Trait Class
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Seed - Physiological traits - Dormancy
Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK119761
AK073487
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MSU ID
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LOC_Os08g36910.1
LOC_Os08g36910.2
LOC_Os08g36910.3
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RAP ID
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Os08g0473900
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Yuan H., Zheng Z., Bao Y., Zhao X., Lv J., Tang C., Wang N., Liang Z., Li H., Xiang J., Qian Y., Shi Y.
Int J Mol Sci 2024 25(4)
Identification and Regulation of Hypoxia-Tolerant and Germination-Related Genes in Rice.
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Nie L., Song S., Yin Q., Zhao T., Liu H., He A., Wang W.
Rice (N Y) 2022 15(1) 19
Enhancement in Seed Priming-Induced Starch Degradation of Rice Seed Under Chilling Stress via GA-Mediated alpha-amylase Expression.
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Sinaga D.S., Ho S.L., Lu C.A., Yu S.M., Huang L.F.
Plant Methods 2021 17(1) 99
Knockdown expression of a MYB-related transcription factor gene, OsMYBS2, enhances production of recombinant proteins in rice suspension cells.
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He Y., Zhu M., Li Z., Jiang S., He Z., Xu S., Chen X., Hu Z., Zhang Z.
Int J Mol Sci 2021 22(12)
<i>IPA1</i> Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and <i>WRKY</i> Pathways.
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Ma Y., Zhao J., Fu H., Yang T., Dong J., Yang W., Chen L., Zhou L., Wang J., Liu B., Zhang S., Edwards D.
Rice (N Y) 2021 14(1) 76
Genome-Wide Identification, Expression and Functional Analysis Reveal the Involvement of FCS-like zinc finger Gene Family in Submergence Response in Rice.
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Zhao J., Li W., Sun S., Peng L., Huang Z., He Y., Wang Z.
Int J Mol Sci 2021 22(4)
The Rice Small Auxin-Up RNA Gene <i>OsSAUR33</i> Regulates Seed Vigor via Sugar Pathway during Early Seed Germination.
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Park J.R., Kim E.G., Jang Y.H., Kim K.M.
BMC Plant Biol. 2021 21(1) 263
Screening and identification of genes affecting grain quality and spikelet fertility during high-temperature treatment in grain filling stage of rice.
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Kaspary T.E., Roma-Burgos N., Merotto A.
Genes (Basel) 2020 11(9)
Snorkeling Strategy: Tolerance to Flooding in Rice and Potential Application for Weed Management.
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Sera Y., Hanamata S., Sakamoto S., Ono S., Kaneko K., Mitsui Y., Koyano T., Fujita N., Sasou A., Masumura T., Saji H., Nonomura K.I., Mitsuda N., Mitsui T., Kurusu T., Kuchitsu K.
Sci Rep 2019 9(1) 18544
Essential roles of autophagy in metabolic regulation in endosperm development during rice seed maturation.
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Yi-Shih Chen, Tuan-Hua David Ho, Liu L., Ding Hua Lee, Chun-Hua Lee, Yi-Ru Chen, Shu-Yu Lin, Chung-An Lu, Su-May Yu
Proc. Natl. Acad. Sci. U.S.A. 2019 116(43) 21925-21935
Sugar starvation-regulated MYBS2 and 14-3-3 protein interactions enhance plant growth, stress tolerance, and grain weight in rice.
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Ye N.H., Wang F.Z., Shi L., Chen M.X., Cao Y.Y., Zhu F.Y., Wu Y.Z., Xie L.J., Liu T.Y., Su Z.Z., Xiao S., Zhang H., Yang J., Gu H.Y., Hou X.X., Hu Q.J., Yi H.J., Zhu C.X., Zhang J., Liu Y.G.
Plant J. 2018 94(4) 612-625
Natural variation in the promoter of rice calcineurin B-like protein10 (OsCBL10) affects flooding tolerance during seed germination among rice subspecies.
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Kim H.B., Cho J.I., Ryoo N., Shin D.H., Park Y.I., Hwang Y.S., Lee S.K., An G., Jeon J.S.
J Integr Plant Biol 2015
Role of rice cytosolic hexokinase OsHXK7 in sugar signaling and metabolism.
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Du H., Wu N., Cui F., You L., Li X., Xiong L.
Plant J. 2014 78(5) 834-49
A homolog of ETHYLENE OVERPRODUCER, osetol1, differentially modulates drought and submergence tolerance in rice.
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Zhang D., Chen L., Li D., Lv B., Chen Y., Chen J., XuejiaoYan, Liang J.
PLoS ONE 2014 9(5) e97120
OsRACK1 is involved in abscisic acid- and H2O2-mediated signaling to regulate seed germination in rice (Oryza sativa, L.).
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Cheng X., Wu Y., Guo J., Du B., Chen R., Zhu L., He G.
Plant J. 2013 76(4) 687-98
A rice lectin receptor-like kinase that is involved in innate immune responses also contributes to seed germination.
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Su CF,Wang YC,Hsieh TH,Lu CA,Tseng TH,Yu SM
Plant Physiol. 2010 153 145-58
A novel MYBS3-dependent pathway confers cold tolerance in rice.
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Kitajima A, Asatsuma S, Okada H, Hamada Y, Kaneko K, Nanjo Y, Kawagoe Y, Toyooka K, Matsuoka K, Takeuchi M, Nakano A, Mitsui T.
Plant Cell 2009 21(9) 2844-58.
The rice alpha-amylase glycoprotein is targeted from the Golgi apparatus through the secretory pathway to the plastids.
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He, Guangcun
Plant Physiol. 2008 146(4) 1810-1820
Herbivore-Induced Callose Deposition on the Sieve Plates of Rice: An Important Mechanism for Host Resistance.
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Yamaguchi, Takeshi
Plant Physiol. 2007 144(1) 258-277
Comprehensive Expression Profiling of Rice Grain Filling-Related Genes under High Temperature Using DNA Microarray.
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Lu CA,Lin CC,Lee KW,Chen JL,Huang LF,Ho SL,Liu HJ,Hsing YI,Yu SM
Plant Cell 2007 19 2484-99
The SnRK1A protein kinase plays a key role in sugar signaling during germination and seedling growth of rice.
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Chen PW, Chiang CM, Tseng TH, Yu SM.
Plant Cell 2006 18(9) 2326-40
Interaction between rice MYBGA and the gibberellin response element controls tissue-specific sugar sensitivity of alpha-amylase genes.
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Yamaguchi,T., Nakayama,K., Hayashi,T., Yazaki,J., Kishimoto,N., Kikuchi,S. and Koike,S.
Biosci. Biotechnol. Biochem. 2004 68(6) 1315-1323
cDNA Microarray Analysis of Rice Anther Genes under Chilling Stress at the Microsporogenesis Stage Revealed Two Genes with DNA Transposon Castaway in the 5'-Flanking Region.
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Lu,C.A., Ho,T.H., Ho,S.L. and Yu,S.M.
Plant Cell 2002 14(8) 1963-1980
Three Novel MYB Proteins with One DNA Binding Repeat Mediate Sugar and Hormone Regulation of alpha-Amylase Gene Expression.
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Hwang YS, Thomas BR, Rodriguez RL.
Plant Mol. Biol. 1999 40(6) 911-920
Differential expression of rice alpha-amylase genes during seedling development under anoxia.
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Hwang, Y.-S., E.E. Karrer, B.R. Thomas, L. Chen and R.L. Rodriguez
Plant Mol. Biol. 1998 36 331-341.
Three cis-elements required for rice alpha-amylase Amy3D expression during sugar starvation.
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Yamaguchi, J.
Breeding Science 1998 48 365-370.
Analysis of embryo-specific alpha-amylase using isolated mature rice embryos.
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C A Lu, E K Lim, S M Yu
J. Biol. Chem. 1998 273(17) 10120-31
Sugar response sequence in the promoter of a rice alpha-amylase gene serves as a transcriptional enhancer.
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Mitsui T, Itoh K.
Trends Plant Sci. 1997 2(7) 255-261
The alpha-amylase multigene family.
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Umemura, T., M. Kuroyanagi, P. Perata, Y. Futsuhara and J. Yamaguchi
Breeding Science 1996 46(Suppl. 2) 31
Functional promoter analysis of rice alpha-amylase gene, RAmy3D (part 2).
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Sheu JJ, Yu TS, Tong WF, Yu SM.
J. Biol. Chem. 1996 271(43) 26998-7004
Carbohydrate starvation stimulates differential expression of rice alpha-amylase genes that is modulated through complicated transcriptional and posttranscriptional processes.
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Parco, A., G. Magpantay, G. Second, R. Rodriguez and N. Huang
RGN 1994 11 137-140.
Restriction fragment length polymorphism and linkage analysis of rice alpha-amylase gene family.
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Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994 138 1251-1274.
Saturated molecular map of the rice genome based on an interspecific backcross population.
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Ranjhan, S., J.C. Litts, M.R. Foolad and R.L. Rodriguez
Theor. Appl. Genet. 1991 82 481-488.
Chromosomal localization and genomic organization of alpha-amylase genes in rice (Oryza sativa L.).
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Rodriguez, R.L., N. Huang, T. Sutliff, S. Ranjhan, E. Karrer and J. Litts
Rice Genetics. II. IRRI, Manila, Philippines. 1991 417-429.
Organization, structure and expression of the alpha-amylase multigene family.
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Huang,N., Sutliff,T.D., Litts,J.C. and Rodriguez,R.L.
Plant Mol. Biol. 1990 14(5) 655-668
Classification and characterization of the rice alpha-amylase multigene family.
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Huang,N., Koizumi,N., Reinl,S. and Rodriguez,R.L.
Nucleic Acids Res. 1990 18(23) 7007-7014
Structural organization and differential expression of rice alpha-amylase genes.
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TextPresso Search
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Search textpresso for AMY3D
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0060047
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Ontologies
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Gene Ontology
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response to hypoxia( GO:0001666 )
response to cold( GO:0009409 )
response to heat( GO:0009408 )
ethylene mediated signaling pathway( GO:0009873 )
response to ethylene stimulus( GO:0009723 )
alpha-amylase activity( GO:0004556 )
calcium ion binding( GO:0005509 )
starch catabolic process( GO:0005983 )
sucrose catabolic process( GO:0005987 )
cytoplasmic membrane-bounded vesicle( GO:0016023 )
response to flooding( GO:0009413 )
carbohydrate homeostasis( GO:0033500 )
positive regulation of growth( GO:0045927 )
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Trait Ontology
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abiotic stress trait( TO:0000168 )
seedling vigor( TO:0000280 )
flooding related trait( TO:0000114 )
grain yield per plant( TO:0000449 )
temperature response trait( TO:0000432 )
ethylene sensitivity( TO:0000173 )
seed dormancy( TO:0000253 )
heat tolerance( TO:0000259 )
cold tolerance( TO:0000303 )
oxygen sensitivity( TO:0000015 )
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Plant Ontology
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Related Strains
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Phenotype images
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Last updated
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Jun 26, 2024
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