Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol AMY3D
Gene Symbol Synonym Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3
CGSNL Gene Name ALPHA-AMYLASE 3D
Gene Name Synonym Alpha-amylase3D, Alpha-amylase isozyme 3D precursor, Alpha-amylase isozyme 3D, Alpha-amylase-3D, Amylase-8
Protein Name ALPHA-AMYLASE 3D
Allele
Chromosome No. 8
Explanation EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. M59351. P27933. M24287. AU166291, AU166292, AU068387, AU166535. LOC_Os08g36910.
Trait Class Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Dormancy
Biochemical character
Expression
Sequence/Locus
cDNA Accession No. AK073487
MSU ID LOC_Os08g36910.1
LOC_Os08g36910.2
LOC_Os08g36910.3
RAP ID Os08g0473900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Ye N.H., Wang F.Z., Shi L., Chen M.X., Cao Y.Y., Zhu F.Y., Wu Y.Z., Xie L.J., Liu T.Y., Su Z.Z., Xiao S., Zhang H., Yang J., Gu H.Y., Hou X.X., Hu Q.J., Yi H.J., Zhu C.X., Zhang J., Liu Y.G.
Plant J. 2018  94(4)  612-625
Natural variation in the promoter of rice calcineurin B-like protein10 (OsCBL10) affects flooding tolerance during seed germination among rice subspecies.
Kim H.B., Cho J.I., Ryoo N., Shin D.H., Park Y.I., Hwang Y.S., Lee S.K., An G., Jeon J.S.
J Integr Plant Biol 2015   
Role of rice cytosolic hexokinase OsHXK7 in sugar signaling and metabolism.
Zhang D., Chen L., Li D., Lv B., Chen Y., Chen J., XuejiaoYan, Liang J.
PLoS ONE 2014  9(5)  e97120
OsRACK1 is involved in abscisic acid- and H2O2-mediated signaling to regulate seed germination in rice (Oryza sativa, L.).
Du H., Wu N., Cui F., You L., Li X., Xiong L.
Plant J. 2014  78(5)  834-49
A homolog of ETHYLENE OVERPRODUCER, osetol1, differentially modulates drought and submergence tolerance in rice.
Cheng X., Wu Y., Guo J., Du B., Chen R., Zhu L., He G.
Plant J. 2013  76(4)  687-98
A rice lectin receptor-like kinase that is involved in innate immune responses also contributes to seed germination.
Su CF,Wang YC,Hsieh TH,Lu CA,Tseng TH,Yu SM
Plant Physiol. 2010  153  145-58
A novel MYBS3-dependent pathway confers cold tolerance in rice.
Kitajima A, Asatsuma S, Okada H, Hamada Y, Kaneko K, Nanjo Y, Kawagoe Y, Toyooka K, Matsuoka K, Takeuchi M, Nakano A, Mitsui T.
Plant Cell 2009  21(9)  2844-58.
The rice alpha-amylase glycoprotein is targeted from the Golgi apparatus through the secretory pathway to the plastids.
He, Guangcun
Plant Physiol. 2008  146(4)  1810-1820
Herbivore-Induced Callose Deposition on the Sieve Plates of Rice: An Important Mechanism for Host Resistance.
Lu CA,Lin CC,Lee KW,Chen JL,Huang LF,Ho SL,Liu HJ,Hsing YI,Yu SM
Plant Cell 2007  19  2484-99
The SnRK1A protein kinase plays a key role in sugar signaling during germination and seedling growth of rice.
Chen PW, Chiang CM, Tseng TH, Yu SM.
Plant Cell 2006  18(9)  2326-40
Interaction between rice MYBGA and the gibberellin response element controls tissue-specific sugar sensitivity of alpha-amylase genes.
Yamaguchi,T., Nakayama,K., Hayashi,T., Yazaki,J., Kishimoto,N., Kikuchi,S. and Koike,S.
Biosci. Biotechnol. Biochem. 2004  68(6)  1315-1323
cDNA Microarray Analysis of Rice Anther Genes under Chilling Stress at the Microsporogenesis Stage Revealed Two Genes with DNA Transposon Castaway in the 5'-Flanking Region.
Hwang YS, Thomas BR, Rodriguez RL.
Plant Mol. Biol. 1999  40(6)  911-920
Differential expression of rice alpha-amylase genes during seedling development under anoxia.
Hwang, Y.-S., E.E. Karrer, B.R. Thomas, L. Chen and R.L. Rodriguez
Plant Mol. Biol. 1998  36  331-341.
Three cis-elements required for rice alpha-amylase Amy3D expression during sugar starvation.
Yamaguchi, J.
Breeding Science 1998  48  365-370.
Analysis of embryo-specific alpha-amylase using isolated mature rice embryos.
Mitsui T, Itoh K.
Trends Plant Sci. 1997  2(7)  255-261
The alpha-amylase multigene family.
Umemura, T., M. Kuroyanagi, P. Perata, Y. Futsuhara and J. Yamaguchi
Breeding Science 1996  46(Suppl. 2)  31
Functional promoter analysis of rice alpha-amylase gene, RAmy3D (part 2).
Sheu JJ, Yu TS, Tong WF, Yu SM.
J. Biol. Chem. 1996  271(43)  26998-7004
Carbohydrate starvation stimulates differential expression of rice alpha-amylase genes that is modulated through complicated transcriptional and posttranscriptional processes.
Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994  138  1251-1274.
Saturated molecular map of the rice genome based on an interspecific backcross population.
Parco, A., G. Magpantay, G. Second, R. Rodriguez and N. Huang
RGN 1994  11  137-140.
Restriction fragment length polymorphism and linkage analysis of rice alpha-amylase gene family.
Ranjhan, S., J.C. Litts, M.R. Foolad and R.L. Rodriguez
Theor. Appl. Genet. 1991  82  481-488.
Chromosomal localization and genomic organization of alpha-amylase genes in rice (Oryza sativa L.).
Rodriguez, R.L., N. Huang, T. Sutliff, S. Ranjhan, E. Karrer and J. Litts
Rice Genetics. II. IRRI, Manila, Philippines. 1991    417-429.
Organization, structure and expression of the alpha-amylase multigene family.
Huang,N., Koizumi,N., Reinl,S. and Rodriguez,R.L.
Nucleic Acids Res. 1990  18(23)  7007-7014
Structural organization and differential expression of rice alpha-amylase genes.
Huang,N., Sutliff,T.D., Litts,J.C. and Rodriguez,R.L.
Plant Mol. Biol. 1990  14(5)  655-668
Classification and characterization of the rice alpha-amylase multigene family.
TextPresso Search Search textpresso for AMY3D ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060047
Ontologies
Gene Ontology response to flooding( GO:0009413 )
alpha-amylase activity( GO:0004556 )
calcium ion binding( GO:0005509 )
starch catabolic process( GO:0005983 )
sucrose catabolic process( GO:0005987 )
cytoplasmic membrane-bounded vesicle( GO:0016023 )
Trait Ontology abiotic stress trait( TO:0000168 )
seed dormancy( TO:0000253 )
temperature response trait( TO:0000432 )
seedling vigor( TO:0000280 )
flooding related trait( TO:0000114 )
Plant Ontology -
Related Strains
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Last updated
Jan 5, 2019


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