Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol NL1
Gene Symbol Synonym nl1, OsGATA15, GATA15
Gene Name Synonym neck leaf1, neck leaf 1, neck leaf-1, NECK LEAF1, GATA transcription factor 15, GATA factor 15
Allele nl1-1, nl1-2, nl1-3
Chromosome No. 5
Explanation LOC_Os05g50270. A neck leaf is an extra leaf grown from the basal node of panicle. Usually most part of panicle is not covered by this neck leaf, but the panicle of NL1 mutant is covered by the neck leaf. If this is longer than a panicle, the spikelet does not appear from the leaf sheath when matured. PO:0009049; inflorescence. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage. DQ784546. C2C2-GATA (GATA C2C2 zinc finger transcription factor). a paralog of Arabidopsis HAN.
Trait Class Reproductive organ - Inflorescence
cDNA Accession No. AK073464
MSU ID LOC_Os05g50270.1
RAP ID Os05g0578900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Locate(cM) 110.0
Link map Classical linkage map
Gupta P., Nutan K.K., Singla-Pareek SL., Pareek A.
Front Plant Sci 2017  8  1944
Abiotic Stresses Cause Differential Regulation of Alternative Splice Forms of GATA Transcription Factor in Rice.
Liu X., Zhou S., Wang W., Ye Y., Zhao Y., Xu Q., Zhou C., Tan F., Cheng S., Zhou D.X.
Plant Cell 2015  27(5)  1428-44
Regulation of histone methylation and reprogramming of gene expression in the rice inflorescence meristem.
Behringer C., Schwechheimer C.
Front Plant Sci 2015  6  90
B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
Wang L,Yin H,Qian Q,Yang J,Huang C,Hu X,Luo D
Cell Res 2009  19  598-611
NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice.
José C Reyes, M Isabel Muro-Pastor, Francisco J Florencio
Plant Physiol. 2004  134(4)  1718-32
The GATA family of transcription factors in Arabidopsis and rice.
Yoshimura, A., O. Ideta, S. Takebayashi, T. Matsumoto, S. Yoshimura, T. Ogawa and N. Iwata
Japan. J. Breed. 1992  42(Suppl. 2)  124-125.
Integration of RFLP and conventional maps in rice. II. The location of gl-1 and xa-5.
Kishimoto, N., E. Shimosaka, S. Matsuura and A. Saito
RGN 1992  9  118-124.
A current RFLP linkage map of rice Alignment of the molecular map with the classical map.
Satoh, H. and N. Iwata
Japan. J. Breed. 1990  40(Suppl. 2)  268-269.
Linkage analysis in rice. On three mutant loci for endosperm properties, ge(giant embryo), du-4(dull endosperm-4) and flo-1(floury endosperm-1).
Yano, M., A. Saito, A. Yoshimura, S. Kuhara, S. Yoshimura, O. Ikeda, N. Kishimoto, K. Saito, R. Ohsawa, K. Kawase, T. Nagamine, T. Ogawa, M. Nakagahra and N. Iwata
Japan. J. Breed. 1990  40(Suppl. 1)  468-469.
Chromosome identification of rice RFLP linkage groups.
Kinoshita, T.
In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo. 1984    187-274.
Gene analysis and linkage map.
Iwata, N., H. Satoh and T. Omura
J. Fac. Agr. Kyushu Univ. 1984  29(2.3)  139-144.
Studies on the trisomics in rice plants (Oryza sativa L.). VII. On some marker genes located on chromosome 2 and their sequence on the linkage map.
Yoshimura, A., N. Iwata and T. Omura
Japan. J. Breed. 1982  32(4)  323-332.
Linkage analysis by reciprocal translocation method in rice plants (Oryza sativa L.). III. Marker genes located on chromosomes 2, 3, 4 and 7.
Sato, S., K. Muraoka and Y. Sano
Japan. J. Breed. 1982  32(3)  232-238.
Reconstruction of a linkage group corresponding to the Nishimura's second chromosome in rice, Oryza sativa L.
Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1981  31(Suppl. 1)  66-67.
Linkage analysis by use of trisomics in rice (Oryza sativa L. ). IV. Linkage groups locating on chromosomes 2 and 10.
Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1977  27(Suppl. 1)  250-251.
Linkage studies in rice.Linkage groups for 6 genes newly described.
Nagao, S. and M. Takahashi
J. Fac. Agr. Hokkaido Univ. 1963  53(1)  72-130.
Trial construction of twelve linkage groups in Japanese rice. (Genetical studies on rice plant, XXVII).
Nagao, S.
Adv. Genet. 1951  4  181-212.
Genic analysis and linkage relationship of characters in rice.
TextPresso Search Search textpresso for NL1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060573
Gene Ontology cell differentiation( GO:0030154 )
Trait Ontology panicle type( TO:0000089 )
Plant Ontology inflorescence( PO:0009049 )
Related Strains
Stocks for Genes 1
F Lines 21
Backcross Fn Generation (T65) 1
Phenotype images
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Photo from A. Yoshimura
Last updated
Jul 5, 2018