Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol SH5
Gene Symbol Synonym OsSH5, RI, SH5/RI, OsRI, VPB1, OsVPB1, OsBLH9, BLH9
CGSNL Gene Name SHATTERING 5
Gene Name Synonym Shattering-5, erticillate rachis, verticillate primary branch 1, BEL1-like homeodomain protein 9
Protein Name BEL1-LIKE HOMEODOMAIN PROTEIN 9
Allele ri, vpb1, vpb1-1, vpb1-2
Chromosome No. 5
Explanation PO:0009010; seed. BEL1-type homeobox. one of the two rice REPLUMLESS orthologs. TO:1000009: branch angle. GO:1902182: shoot apical meristem development. TO:0000847: panicle inflorescence morphology trait. PO:0030123: panicle inflorescence.
Trait Class Reproductive organ - Inflorescence
Seed - Physiological traits - Shattering
Character as QTL - Yield and productivity
Reproductive organ - Panicle, Mode of branching
Expression
Sequence/Locus
cDNA Accession No. AK100916
MSU ID LOC_Os05g38120.1
RAP ID Os05g0455200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Cao C., Guo S., Deng P., Yang S., Xu J., Hu T., Hu Z., Chen D., Zhang H., Navea I.P., Chin J.H., Zhang W., Jing W.
Plant J. 2024  119(3)  1369-1385
The BEL1-like homeodomain protein OsBLH4 regulates rice plant height, grain number, and heading date by repressing the expression of OsGA2ox1.
Wang L., Ming L., Liao K., Xia C., Sun S., Chang Y., Wang H., Fu D., Xu C., Wang Z., Li X., Xie W., Ouyang Y., Zhang Q., Li X., Zhang Q., Xiao J., Zhang Q.
Mol Plant 2021  14(7)  1168-1184
Bract suppression regulated by the miR156/529-SPLs-NL1-PLA1 module is required for the transition from vegetative to reproductive branching in rice.
Li M., Fu D., Xu T., Wu C.
Int J Mol Sci 2021  22(15) 
<i>VPB1</i> Encoding BELL-like homeodomain Protein Is Involved in Rice Panicle Architecture.
Jiang L., Ma X., Zhao S., Tang Y., Liu F., Gu P., Fu Y., Zhu Z., Cai H., Sun C., Tan L.
Plant Cell 2019  31(1)  17-36
The APETALA2-like transcription factor SUPERNUMERARY BRACT Controls Rice Seed Shattering and Seed Size.
Ikeda T., Tanaka W., Toriba T., Suzuki C., Maeno A., Tsuda K., Shiroishi T., Kurata T., Sakamoto T., Murai M., Matsusaka H., Kumamaru T., Hirano H.Y.
Plant J. 2019  98(3)  465-478
BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice.
Yoon J., Cho L.H., Kim S.L., Choi H., Koh H.J., An G.
Plant J. 2014  79(5)  717-28
The BEL1-type homeobox gene SH5 induces Seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis.
DB Reference
Gramene ID -
Ontologies
Gene Ontology DNA binding( GO:0003677 )
nucleus( GO:0005634 )
regulation of transcription, DNA-dependent( GO:0006355 )
lignin biosynthetic process( GO:0009809 )
meristem maintenance( GO:0010073 )
maintenance of shoot apical meristem identity( GO:0010492 )
internode patterning( GO:0080006 )
regulation of inflorescence meristem growth( GO:0010081 )
primary meristem tissue development( GO:0010065 )
inflorescence development( GO:0010229 )
negative regulation of transcription, DNA-dependent( GO:0045892 )
meristem development( GO:0048507 )
meristem initiation( GO:0010014 )
hormone-mediated signaling( GO:0009755 )
maintenance of inflorescence meristem identity( GO:0010077 )
bract development( GO:0010432 )
Trait Ontology grain shattering( TO:0000473 )
lignin biosynthesis trait( TO:0000733 )
grain yield( TO:0000396 )
inflorescence anatomy and morphology trait( TO:0000373 )
primary branch number( TO:0000547 )
secondary branching of inflorescence( TO:0000142 )
phyllotaxy( TO:0006014 )
shoot apical meristem development( TO:0006020 )
inflorescence development trait( TO:0000621 )
primary branching of inflorescence( TO:0000052 )
secondary branch number( TO:0000557 )
grain number( TO:0002759 )
spikelet number( TO:0000456 )
Plant Ontology seed( PO:0009010 )
spikelet meristem( PO:0006327 )
inflorescence( PO:0009049 )
leaf( PO:0025034 )
leaf sheath( PO:0020104 )
root( PO:0009005 )
stem( PO:0009047 )
shoot apical meristem( PO:0020148 )
inflorescence meristem( PO:0000230 )
inflorescence development stage( PO:0001083 )
Related Strains
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Phenotype images
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Last updated
Mar 5, 2026

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