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Basic Information
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CGSNL Gene Symbol
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RBCL
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Gene Symbol Synonym
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rbcL, rbcA, OsrbcL
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CGSNL Gene Name
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RUBISCO LARGE SUBUNIT
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Gene Name Synonym
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Ribulose bisphosphate carboxylase large chain precursor, Ribulose bisphosphate carboxylase large chain, RuBisCO large subunit, ribulose 1,5-bisphosphate carboxylase/oxygenase large chain, RUBISCO large chain, ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
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Protein Name
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RUBISCO LARGE SUBUNIT
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Allele
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Chromosome No.
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Pt
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Explanation
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EC=4.1.1.39 P0C510. P0C511(indica). P0C512(japonica). D00207. X04789. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46127: Nip064 (cultivar Nipponbare), AY522331 (isolate PA64S). HE573284 (Oryza meridionalis), HE577876 (Oryza coarctata). X15901:CAA34004 (Japonica Group chloroplast genome). GU592207:ADD62840 (Japonica chloroplast comlete genome). L24073 (a chimeric rbcL). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).
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Trait Class
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Biochemical character
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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LOC_Osp1g00420
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RAP ID
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-
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Links
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Organelle Genome
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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References
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Fang H., Song L., Liu K., Gu Y., Guo Y., Zhang C., Zhang L.
Int J Mol Sci 2025 26(5)
<i>OsRNE</i> Encodes an RNase E/G-Type Endoribonuclease Required for Chloroplast Development and Seedling Growth in Rice.
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Qiu Z., Wen S., Sun P., Chen D., Wang C., Song X., Xiao L., Zhang P., Zhao D., Wen C., Guan P., Du X., Sun Y., Xu C., Song J.
Plants (Basel) 2025 14(2)
RAS, a Pentatricopeptide Repeat Protein, Interacts with OsTRX z to Regulate Chloroplast Gene Transcription and RNA Processing.
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Mo T., Wang T., Sun Y., Kumar A., Mkumbwa H., Fang J., Zhao J., Yuan S., Li Z., Li X.
Plant Commun 2024 101073
The chloroplast pentatricopeptide repeat protein RCN22 regulates tiller number in rice by affecting sugar levels via the tb1-RCN22-RbcL module.
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Liu L., Wang Y., Tian Y., Song S., Wu Z., Ding X., Zheng H., Huang Y., Liu S., Dong X., Wan J., Liu L.
Plants (Basel) 2023 12(2)
Isolation and Characterization of <i>SPOTTED LEAF42</i> Encoding a Porphobilinogen Deaminase in Rice.
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Liu X., Deng X.J., Li C.Y., Xiao Y.K., Zhao K., Guo J., Yang X.R., Zhang H.S., Chen C.P., Luo Y.T., Tang Y.L., Yang B., Sun C.H., Wang P.R.
Int J Mol Sci 2022 23(10)
Mutation of Protoporphyrinogen IX Oxidase Gene Causes Spotted and rolled leaf and Its Overexpression Generates Herbicide Resistance in Rice.
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Qiu Z., Chen D., Teng L., Guan P., Yu G., Zhang P., Song J., Zeng Q., Zhu L.
Rice (N Y) 2022 15(1) 50
OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.
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Xu J., Ji Z., Wang C., Xu F., Wang F., Zheng Y., Tang Y., Wei Z., Zhao T., Zhao K.
Front Plant Sci 2022 13 918673
<i>WATER-SOAKED SPOT1</i> Controls Chloroplast Development and leaf senescence <i>via</i> Regulating Reactive Oxygen Species Homeostasis in Rice.
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Zhou K., Zhang C., Xia J., Yun P., Wang Y., Ma T., Li Z.
Rice (N Y) 2021 14(1) 47
Albino seedling lethality 4; Chloroplast 30S Ribosomal Protein S1 is Required for Chloroplast Ribosome Biogenesis and Early Chloroplast Development in Rice.
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Zhang Q., Shen L., Ren D., Hu J., Zhu L., Gao Z., Zhang G., Guo L., Zeng D., Qian Q.
Biomolecules 2020 10(2)
Characterization of the CRM Gene Family and Elucidating the Function of OsCFM2 in Rice.
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Fang G., Yang S., Ruan B., Liu C., Zhang A., Jiang H., Ding S., Tian B., Zhang Y., Jahan N., Zhu L., Zhang G., Dong G., Zhang Q., Zeng D., Guo L., Gao Z., Qian Q.
Rice (N Y) 2020 13(1) 49
Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice.
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Zhu X., Mou C., Zhang F., Huang Y., Yang C., Ji J., Liu X., Cao P., Nguyen T., Lan J., Zhou C., Liu S., Jiang L., Wan J.
Rice (N Y) 2020 13(1) 45
WSL9 Encodes an HNH endonuclease domain-containing protein that Is Essential for Early Chloroplast Development in Rice.
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Fu J., Liu B.
Front Bioeng Biotechnol 2020 8 685
Exogenous Cry1Ab/c protein Recruits Different Endogenous Proteins for Its Function in Plant Growth and Development.
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Lin D., Kong R., Chen L., Wang Y., Wu L., Xu J., Piao Z., Lee G., Dong Y.
Sci Rep 2020 10(1) 8518
Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice.
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Liu H., Ren D., Jiang L., Li X., Yao Y., Mi L., Chen W., Mo A., Jiang N., Yang J., Chen P., Ma H., Luo X., Lu P.
Plant Cell 2020
A Natural Variation in PLEIOTROPIC DEVELOPMENTAL DEFECTS Uncovers a Crucial Role for Chloroplast tRNA Modification in Translation and Plant Development.
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Zhu X., Ze M., Yin J., Chern M., Wang M., Zhang X., Deng R., Li Y., Liao H., Wang L., Tu B., Song L., He M., Li S., Wang W.M., Chen X., Wang J., Li W.
Plant Sci. 2020 290 110295
A phosphofructokinase B-type carbohydrate kinase family protein, PFKB1, is essential for chloroplast development at early seedling stage in rice.
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Lin D., Zhang L., Mei J., Chen J., Piao Z., Lee G., Dong Y.
Plant Biol (Stuttg) 2019 21(4) 585-594
Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.
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Zhang Q., Shen L., Wang Z., Hu G., Ren D., Hu J., Zhu L., Gao Z., Zhang G., Guo L., Zeng D., Qian Q.
Int J Mol Sci 2019 20(18)
OsCAF1, a CRM Domain Containing Protein, Influences Chloroplast Development.
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Atul Prakash Sathe, Su X., Chen Z., Chen T., Wei X., Tang S., Xiao-Bo Zhang, Jian-Li Wu
Rice (N Y) 2019 12(1) 68
Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.
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Geun-Hee Choi, Back K.
Biomolecules 2019 9(10)
Suppression of Melatonin 2-Hydroxylase Increases Melatonin Production Leading to the Enhanced Abiotic Stress Tolerance against Cadmium, Senescence, Salt, and Tunicamycin in Rice Plants.
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Gong P., Luo Y., Huang F., Chen Y., Zhao C., Wu X., Li K., Yang X., Cheng F., Xiang X., Wu C., Pan G.
Plant Mol. Biol. 2019 100(1-2) 133-149
Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.
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Cheng R., Gong L., Li Z., Liang Y.K.
J. Plant Physiol. 2019 232 39-50
Rice BIG gene is required for seedling viability.
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Xu X., Chen Z., Shi Y.F., Wang H.M., He Y., Shi L., Chen T., Wu J.L., Zhang X.B.
BMC Plant Biol. 2018 18(1) 264
Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice.
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He Y., Li L., Zhang Z., Wu J.L.
Int J Mol Sci 2018 19(1)
Identification and Comparative Analysis of Premature Senescence Leaf Mutants in Rice (Oryza sativa L.).
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Lin D., Jiang Q., Ma X., Zheng K., Gong X., Teng S., Xu J., Dong Y.
G3 (Bethesda) 2018 8(1) 253-263
Rice <i>TSV3</i> Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.
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Xiao H., Xu Y., Ni C., Zhang Q., Zhong F., Huang J., Liu W., Peng L., Zhu Y., Hu J.
J. Exp. Bot. 2018 69(12) 2923-2936
A rice dual-localized pentatricopeptide repeat protein is involved in organellar RNA editing together with OsMORFs.
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Chen N., Wang P., Li C., Wang Q., Pan J., Xiao F., Wang Y., Zhang K., Li C., Yang B., Sun C., Deng X.
Plant Cell Physiol. 2018
A single nucleotide mutation of IspE gene participating in the MEP pathway for isoprenoid biosynthesis causes green-revertible yellow leaf phenotype in rice.
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Liu Z., Wang Z., Gu H., You J., Hu M., Zhang Y., Zhu Z., Wang Y., Liu S., Chen L., Liu X., Tian Y., Zhou S., Jiang L., Liu L., Wan J.
Front Plant Sci 2018 9 782
Identification and Phenotypic Characterization of <i>ZEBRA LEAF16</i> Encoding a beta-hydroxyacyl-ACP dehydratase in Rice.
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Li H., Ji G., Wang Y., Qian Q., Xu J., Sodmergen, Liu G., Zhao X., Chen M., Zhai W., Li D., Zhu L.
Front Plant Sci 2018 9 762
WHITE PANICLE3, a Novel Nucleus-Encoded Mitochondrial Protein, Is Essential for Proper Development and Maintenance of Chloroplasts and Mitochondria in Rice.
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Lin D., Zheng K., Liu Z., Li Z., Teng S., Xu J., Dong Y.
Plant Genome 2018 11(1)
Rice <i>TCM1</i> Encoding a Component of the TAC Complex is Required for Chloroplast Development under Cold Stress.
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Qiu Z., Chen D., He L., Zhang S., Yang Z., Zhang Y., Wang Z., Ren D., Qian Q., Guo L., Zhu L.
Rice (N Y) 2018 11(1) 39
The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9.
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Morita R., Nakagawa M., Takehisa H., Hayashi Y., Ichida H., Usuda S., Ichinose K., Abe H., Shirakawa Y., Sato T., Fujiwara M.T., Itoh R.D., Abe T.
Biosci. Biotechnol. Biochem. 2017 81(2) 271-282
Heavy-ion beam mutagenesis identified an essential gene for chloroplast development under cold stress conditions during both early growth and tillering stages in rice.
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Sun J., Zheng T., Yu J., Wu T., Wang X., Chen G., Tian Y., Zhang H., Wang Y., Terzaghi W., Wang C., Wan J.
New Phytol. 2017
TSV, a putative plastidic oxidoreductase, protects rice chloroplasts from cold stress during development by interacting with plastidic thioredoxin Z.
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Sheng Z., Lv Y., Li W., Luo R., Wei X., Xie L., Jiao G., Shao G., Wang J., Tang S., Hu P.
PLoS ONE 2017 12(5) e0177989
Yellow-Leaf 1 encodes a magnesium-protoporphyrin IX monomethyl ester cyclase, involved in chlorophyll biosynthesis in rice (Oryza sativa L.).
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Zhou K., Ren Y., Zhou F., Wang Y., Zhang L., Lyu J., Wang Y., Zhao S., Ma W., Zhang H., Wang L., Wang C., Wu F., Zhang X., Guo X., Cheng Z., Wang J., Lei C., Jiang L., Li Z., Wan J.
Planta 2017 245(1) 45-60
Young Seedling stripe1 encodes a chloroplast nucleoid-associated protein required for chloroplast development in rice seedlings.
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Wang S., Lei C., Wang J., Ma J., Tang S., Wang C., Zhao K., Tian P., Zhang H., Qi C., Cheng Z., Zhang X., Guo X., Liu L., Wu C., Wan J.
J. Exp. Bot. 2017 68(5) 899-913
SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice.
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Zhang Z., Cui X., Wang Y., Wu J., Gu X., Lu T.
Mol Plant 2017 10(1) 86-98
The RNA Editing Factor wsp1 Is Essential for Chloroplast Development in Rice.
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Li Y.Y., Shen A., Xiong W., Sun Q.L., Luo Q., Song T., Li Z.L., Luan W.J.
Rice (N Y) 2016 9(1) 46
Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
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Wang Y., Zhang J., Shi X., Peng Y., Li P., Lin D., Dong Y., Teng S.
J. Exp. Bot. 2016
Temperature-sensitive albino gene tcd5, encoding a monooxygenase, affects chloroplast development at low temperatures.
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Zheng K., Zhao J., Lin D., Chen J., Xu J., Zhou H., Teng S., Dong Y.
Rice (N Y) 2016 9(1) 13
The Rice TCM5 Gene Encoding a Novel Deg protease protein is Essential for Chloroplast Development under High Temperatures.
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Zhang Z., Tan J., Shi Z., Xie Q., Xing Y., Liu C., Chen Q., Zhu H., Wang J., Zhang J., Zhang G.
Plant Physiol. 2016
albino leaf 1 that Encodes the sole Octotricopeptide Repeat Protein Is Responsible for Chloroplast Development in Rice.
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Wang Y., Wang C., Zheng M., Lyu J., Xu Y., Li X., Niu M., Long W., Wang D., Wang H., Terzaghi W., Wang Y., Wan J.
Plant Physiol. 2016 170(4) 2110-23
WHITE PANICLE1, a Val-tRNA synthetase Regulating Chloroplast Ribosome Biogenesis in Rice, Is Essential for Early Chloroplast Development.
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Hayashi G., Shibato J., Imanaka T., Cho K., Kubo A., Kikuchi S., Satoh K., Kimura S., Ozawa S., Fukutani S., Endo S., Ichikawa K., Agrawal G.K., Shioda S., Fukumoto M., Rakwal R.
J. Hered. 2014 105(5) 723-38
Unraveling low-level gamma radiation--responsive changes in expression of early and late genes in leaves of rice seedlings at litate Village, Fukushima.
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Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012 7 (7) E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
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Fukayama H., Ueguchi C., Nishikawa K., Katoh N., Ishikawa C., Masumoto C., Hatanaka T., Misoo S.
Plant Cell Physiol. 2012 53(6) 976-86
Overexpression of Rubisco Activase Decreases the Photosynthetic CO2 Assimilation Rate by Reducing Rubisco Content in Rice Leaves.
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Aliscioni,S., Bell,H.L., Besnard,G., Christin,P.A., Columbus,J.T., Duvall,M.R., Edwards,E.J., Giussani,L., Hasenstab-Lehman,K., Hilu,K.W., Hodkinson,T.R., Ingram,A.L., Kellog,E.A., Mashayekhi,S., Morrone,O., Osborne,C.P., Salamin,N., Schaefer,H., Spriggs,E., Smith,S.A. and Zuloaga,F.
New Phytol. 2012 193(2) 304-312
New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins
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Yang Q. , He H. , Li H. , Tian H. , Zhang J. , Zhai L. , Chen J. , Wu H. , Yi G. , He Z.H. , Peng X.
PLoS One 2011 6(5) e20015
NOA1 Functions in a Temperature-Dependent Manner to Regulate Chlorophyll Biosynthesis and Rubisco Formation in Rice.
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Nock,C.J., Waters,D.L., Edwards,M.A., Bowen,S.G., Rice,N., Cordeiro,G.M. and Henry,R.J.
Plant Biotechnol J. 2011 9(3) 328-333
Chloroplast genome sequences from total DNA for plant identification
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Makino, Amane
Plant Cell Physiol. 2007 48(4) 626-637
Increased Rubisco Content in Transgenic Rice Transformed with the 'Sense' rbcS Gene.
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Tang,J., Xia,H., Cao,M., Zhang,X., Zeng,W., Hu,S., Tong,W., Wang,J., Wang,J., Yu,J., Yang,H. and Zhu,L.
Plant Physiol. 2004 135(1) 412-420
A Comparison of Rice Chloroplast Genomes.
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Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.
Gene 2004 340(1) 133-139
The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice
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Zhang,J.-S., Gu,J., Liu,F.-H. and Chen,S.-Y.
Theor. Appl. Genet. 1995 91 361-366
A gene encoding a truncated large subunit of Rubisco is transcribed and salt-inducible in rice
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Nakazono,M. and Hirai,A.
Mol. Gen. Genet. 1993 236(2-3) 341-346
Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice
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Morton,B.R. and Clegg,M.T.
Curr. Genet. 1993 24(4), 357-365
A chloroplast DNA mutational hotspot and gene conversion in a noncoding region near rbcL in the grass family (Poaceae)
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Shimada,H. and Sugiura,M.
Nucleic Acids Res. 1991 19(5) 983-995
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
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Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.
Mol. Gen. Genet. 1989 217(2-3) 185-194
The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals
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Moon,E., Kao,T.H. and Wu,R.
Mol. Gen. Genet. 1988 213(2-3) 247-253
Rice mitochondrial genome contains a rearranged chloroplast gene cluster
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Moon,E., Kao,T.H. and Wu,R.
Nucleic Acids Res. 1987 15(2) 611-630
Rice chloroplast DNA molecules are heterogeneous as revealed by DNA sequences of a cluster of genes
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Nishizawa,Y. and Hirai,A.
Jpn. J. Genet. 1987 62 389-395
Nucleotide sequence and expression of the gene for the large subunit of rice ribulose 1, 5-bisphosphate carboxylase
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DB Reference
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Gramene ID
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GR:0100360
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Ontologies
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Gene Ontology
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magnesium ion binding( GO:0000287 )
monooxygenase activity( GO:0004497 )
chloroplast( GO:0009507 )
ribulose-bisphosphate carboxylase activity( GO:0016984 )
reductive pentose-phosphate cycle( GO:0019253 )
plastid( GO:0009536 )
chloroplast ribulose bisphosphate carboxylase complex( GO:0009573 )
photorespiration( GO:0009853 )
response to gamma radiation( GO:0010332 )
oxidation reduction( GO:0055114 )
carbon utilization by fixation of carbon dioxide( GO:0015977 )
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Trait Ontology
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salt tolerance( TO:0006001 )
tillering ability( TO:0000329 )
photosynthetic rate( TO:0001015 )
sugar content( TO:0000333 )
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Plant Ontology
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Related Strains
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Phenotype images
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Last updated
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Sep 8, 2025
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Update info.