Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol PDA
Gene Symbol Synonym PDS1, PDS, OsPDS, Pds, OsPDA
CGSNL Gene Name PHYTOENE DESATURASE
Gene Name Synonym "Phytoene dehydrogenase, chloroplastic/chromoplastic", Phytoene desaturase
Protein Name PHYTOENE DESATURASE
Allele
Chromosome No. 3
Explanation EC=1.14.99.- A2XDA1(indica). Q0DUI8(japonica). AF049356. The albino phenotype of PDS mutant is caused by a lack of carotenoids.
Trait Class Biochemical character
Coloration - Others
Expression
Sequence/Locus
cDNA Accession No. A2XDA1
MSU ID LOC_Os03g08570.1
RAP ID Os03g0184000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Jung Y.J., Go J., Kim J.Y., Lee H.J., Kim J.H., Lee H.M., Cho Y.G., Kang K.K.
Plants (Basel) 2025  14(3) 
ABA and Pre-Harvest Sprouting Differences in Knockout Lines of OsPHS3 Encoding Carotenoid Isomerase via CRISPR/Cas9 in Rice.
Kim H.K., Kim J.Y., Kim J.H., Go J.Y., Jung Y.S., Lee H.J., Ahn M.J., Yu J., Bae S., Kim H.S., Kwak S.S., Kim M.S., Cho Y.G., Jung Y.J., Kang K.K.
Plants (Basel) 2022  12(1) 
Biochemical Characterization of Orange-Colored Rice Calli Induced by Target Mutagenesis of <i>OsOr</i> Gene.
Jin X., Baysal C., Drapal M., Sheng Y., Huang X., He W., Shi L., Capell T., Fraser P.D., Christou P., Zhu C.
Plants (Basel) 2021  10(7) 
The Coordinated Upregulated Expression of Genes Involved in MEP, Chlorophyll, Carotenoid and Tocopherol Pathways, Mirrored the Corresponding Metabolite Contents in Rice Leaves during De-Etiolation.
Andrieu A., Breitler J.C., Sire C., Meynard D., Gantet P., Guiderdoni E.
Rice (N Y) 2012  5  23
An in planta, Agrobacterium-mediated transient gene expression method for inducing gene silencing in rice (Oryza sativa L.) leaves
Miki D, Itoh R, Shimamoto K.
Plant Physiol. 2005  138(4)  1903-1913
RNA silencing of single and multiple members in a gene family of rice.
Miki D., Shimamoto K.
Plant Cell Physiol. 2004  45(4)  490-5
Simple RNAi vectors for stable and transient suppression of gene function in rice.
Vigneswaran,A. and Wurtzel,E.T.
Plant Physiol. 1999  121(1)  312
A Rice cDNA Encoding Phytoene Desaturase (Accession No. AF049356) (PGR99-131)
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to light stimulus( GO:0009416 )
chloroplast( GO:0009507 )
chromoplast( GO:0009509 )
plastid( GO:0009536 )
carotenoid biosynthetic process( GO:0016117 )
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen( GO:0016705 )
oxidation reduction( GO:0055114 )
Trait Ontology light sensitivity( TO:0000075 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Jun 20, 2025

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