Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol PIN1A
Gene Symbol Synonym PIN1C, OsPIN1C, OsPIN1c, OsPIN1a
Gene Name Synonym PIN PROTEIN 1C, pin-formed1a, pin-formed 1a
Protein Name PIN PROTEIN 1A
Chromosome No. 6
Explanation BR000829. gi:51535183. OsPIN1c in Zou et al. 2014, Yuan et al. 2019. GO:1901698: response to nitrogen compound. GO:0060918: auxin transport. TO:0001041: root yield. GO:1990110: callus formation.
Trait Class Biochemical character
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
cDNA Accession No. AK103208
MSU ID LOC_Os06g12610.1
RAP ID Os06g0232300
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Guo F., Wang H., Lian G., Cai G., Liu W., Zhang H., Li D., Zhou C., Han N., Zhu M., Su Y., Seo P.J., Xu L., Bian H.
Commun Biol 2023  6(1)  457
Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice.
Li Y., Liu P., Mei L., Jiang G., Lv Q., Zhai W., Li C.
Front Plant Sci 2022  13  1065253
Knockout of a papain-like cysteine protease gene <i>OCP</i> enhances blast resistance in rice.
Wang H.Q., Xuan W., Huang X.Y., Mao C., Zhao F.J.
Plant Cell Physiol. 2021  62(1)  166-177
Cadmium Inhibits lateral root Emergence in Rice by Disrupting OsPIN-mediated Auxin Distribution and the Protective Effect of OsHMA3.
Tripathi D.K., Rai P., Guerriero G., Sharma S., Corpas F.J., Singh V.P.
J. Exp. Bot. 2020   
Silicon induces adventitious root formation in rice (Oryza sativa L.) under arsenate stress with the involvement of nitric oxide and indole-3-acetic acid.
Malik N., Ranjan R., Parida S.K., Agarwal P., Tyagi A.K.
Plant J. 2020  101(6)  1411-1429
Mediator subunit OsMED14_1 plays an important role in rice development.
Naz M., Luo B., Guo X., Li B., Chen J., Fan X.
Genes (Basel) 2019  10(4) 
Overexpression of Nitrate Transporter <i>OsNRT2.1</i> Enhances Nitrate-Dependent Root Elongation.
Yuan S., Kim S.C., Deng X., Hong Y., Wang X.
New Phytol. 2019  223(1)  261-276
Diacylglycerol kinase and associated lipid mediators modulate rice root architecture.
Xu Y.X., Xiao M.Z., Liu Y., Fu J.L., He Y., Jiang D.A.
Plant Mol. Biol. 2017   
The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.
Shafiq S., Chen C., Yang J., Cheng L., Ma F., Widemann E., Sun Q.
Mol Plant 2017   
DNA Topoisomerase 1 prevents R-loop accumulation to modulate auxin-regulated root development in rice.
Yang J., Yuan Z., Meng Q., Huang G., Périn C., Bureau C., Meunier A.C., Ingouff M., Bennett M.J., Liang W., Zhang D.
Front Plant Sci 2017  8  256
Dynamic Regulation of Auxin Response during Rice Development Revealed by Newly Established Hormone Biosensor Markers.
Sun W., Gao D., Xiong Y., Tang X., Xiao X., Wang C., Yu S.
Mol Plant 2017  10(11)  1417-1433
Hairy Leaf 6, an AP2/ERF Transcription Factor, Interacts with OsWOX3B and Regulates Trichome Formation in Rice.
Xu J., Zha M., Li Y., Ding Y., Chen L., Ding C., Wang S.
Plant Cell Rep. 2015  34(9)  1647-62
The interaction between nitrogen availability and auxin, cytokinin, and strigolactone in the control of shoot branching in rice (Oryza sativa L.).
Zou Y., Liu X., Wang Q., Chen Y., Liu C., Qiu Y., Zhang W.
Biochim. Biophys. Acta 2014  1840(6)  1676-1685
OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.
ChenJia Shen, YouHuang Bai, SuiKang Wang, SaiNa Zhang, YunRong Wu, Chen M., DeAn Jiang, YanHua Qi
FEBS J. 2010  277(14)  2954-69
Expression profile of PIN, AUX/LAX and PGP auxin transporter gene families in Sorghum bicolor under phytohormone and abiotic stress.
Miyashita Y., Takasugi T., Ito Y.
Plant Science 2010  178  424-428
Identification and expression analysis of PIN genes in rice
Wang JR,Hu H,Wang GH,Li J,Chen JY,Wu P
Mol Plant 2009  2(4)  823-31
Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and regulation by hormones.
Carraro N., Forestan C., Canova S., Traas J., Varotto S.
Plant Physiol. 2006  142(1)  254-64
ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize.
Ivan A Paponov, William D Teale, Trebar M., Blilou I., Palme K.
Trends Plant Sci. 2005  10(4)  170-7
The PIN auxin efflux facilitators: evolutionary and functional perspectives.
Xu M, Zhu L, Shou H, Wu P.
Plant Cell Physiol. 2005  46(10)  1674-81
A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice.
RGN 2004  21  87-88
Identification of rice PIN homologs
TextPresso Search Search textpresso for PIN1A ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to cadmium ion( GO:0046686 )
adventitious root development( GO:0048830 )
response to arsenic( GO:0046685 )
integral to membrane( GO:0016021 )
transmembrane transport( GO:0055085 )
response to hormone stimulus( GO:0009725 )
response to auxin stimulus( GO:0009733 )
floral organ formation( GO:0048449 )
response to cytokinin stimulus( GO:0009735 )
Trait Ontology nitrogen sensitivity( TO:0000011 )
auxin sensitivity( TO:0000163 )
plant growth hormone sensitivity( TO:0000401 )
cytokinin sensitivity( TO:0000167 )
floral organ development trait( TO:0006022 )
silicon sensitivity( TO:0000031 )
root number( TO:0000084 )
adventitious root number( TO:0001006 )
root fresh weight( TO:0000578 )
callus induction( TO:0000428 )
Plant Ontology floral organ differentiation stage( PO:0007600 )
gynoecium primordium( PO:0000019 )
anther( PO:0009066 )
anther vascular system( PO:0008013 )
lemma( PO:0009037 )
flower bract primordium( PO:0025488 )
Related Strains
Phenotype images
Last updated
Oct 5, 2023