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Basic Information
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CGSNL Gene Symbol
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PIN1C
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Gene Symbol Synonym
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PIN1B, OsPIN1B, OsPIN1b, OsPIN1c
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CGSNL Gene Name
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PIN PROTEIN 1C
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Gene Name Synonym
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PIN PROTEIN 1B
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Protein Name
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PIN PROTEIN 1C
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Allele
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Chromosome No.
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11
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Explanation
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BR000828. gi:32988390. OsPIN1b in Zou et al. 2014, Chen et al. 2020, Hou et al. 2025. GO:0060918: auxin transport. GO:1990110: callus formation.
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Trait Class
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Biochemical character
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK103181
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MSU ID
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LOC_Os11g04190.1
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RAP ID
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Os11g0137000
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Hou Y.H., Kuo C.Y., Lai T.Y.E., Xiao M.H., Ho S.L.
Sci Rep 2025 15(1) 26430
Transcriptional corepressor OsTPR1 regulates tillering and lateral root development in rice.
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Guo F., Wang H., Lian G., Cai G., Liu W., Zhang H., Li D., Zhou C., Han N., Zhu M., Su Y., Seo P.J., Xu L., Bian H.
Commun Biol 2023 6(1) 457
Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice.
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Ouyang Q., Zhang Y., Yang X., Yang C., Hou D., Liu H., Xu H.
Plants (Basel) 2023 12(15)
Overexpression of <i>OsPIN9</i> Impairs Chilling Tolerance via Disturbing ROS Homeostasis in Rice.
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Ruan N., Dang Z., Wang M., Cao L., Wang Y., Liu S., Tang Y., Huang Y., Zhang Q., Xu Q., Chen W., Li F.
J. Exp. Bot. 2022 73(8) 2320-2335
FRAGILE CULM 18 encodes a UDP-glucuronic acid decarboxylase required for xylan biosynthesis and plant growth in rice.
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Wang H.Q., Xuan W., Huang X.Y., Mao C., Zhao F.J.
Plant Cell Physiol. 2021 62(1) 166-177
Cadmium Inhibits lateral root Emergence in Rice by Disrupting OsPIN-mediated Auxin Distribution and the Protective Effect of OsHMA3.
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Chen R., Xu N., Yu B., Wu Q., Li X., Wang G., Huang J.
Plant Sci. 2020 298 110575
The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice.
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Malik N., Ranjan R., Parida S.K., Agarwal P., Tyagi A.K.
Plant J. 2020 101(6) 1411-1429
Mediator subunit OsMED14_1 plays an important role in rice development.
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Song M., Fan X., Chen J., Qu H., Luo L., Xu G.
Plant Physiol. 2020
OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.
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Naz M., Luo B., Guo X., Li B., Chen J., Fan X.
Genes (Basel) 2019 10(4)
Overexpression of Nitrate Transporter <i>OsNRT2.1</i> Enhances Nitrate-Dependent Root Elongation.
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Yang J., Yuan Z., Meng Q., Huang G., Périn C., Bureau C., Meunier A.C., Ingouff M., Bennett M.J., Liang W., Zhang D.
Front Plant Sci 2017 8 256
Dynamic Regulation of Auxin Response during Rice Development Revealed by Newly Established Hormone Biosensor Markers.
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Xu Y.X., Xiao M.Z., Liu Y., Fu J.L., He Y., Jiang D.A.
Plant Mol. Biol. 2017
The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.
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Ma Y., Yang C., He Y., Tian Z., Li J.
J. Exp. Bot. 2017 68(17) 4885-4898
Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.
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Cho S.H., Paek N.C.
Plant Signal Behav 2016 11(6) e1184807
Regulatory role of the OsWOX3A transcription factor in rice root development.
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Zhao F.Y.a, Han M.M.a, Zhang S.Y.b, Ren J.a, Hu F.a, Wang X.a
Russian Journal of Plant Physiology 2014 61 608-618
MAPKs as a cross point in H2O2 and auxin signaling under combined cadmium and zinc stress in rice roots
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Zou Y., Liu X., Wang Q., Chen Y., Liu C., Qiu Y., Zhang W.
Biochim. Biophys. Acta 2014 1840(6) 1676-1685
OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.
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Chen Y., Fan X., Song W., Zhang Y., Xu G.
Plant Biotechnol. J. 2012 10(2) 139-49
Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLazy1.
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Miyashita Y., Takasugi T., Ito Y.
Plant Science 2010 178 424-428
Identification and expression analysis of PIN genes in rice
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ChenJia Shen, YouHuang Bai, SuiKang Wang, SaiNa Zhang, YunRong Wu, Chen M., DeAn Jiang, YanHua Qi
FEBS J. 2010 277(14) 2954-69
Expression profile of PIN, AUX/LAX and PGP auxin transporter gene families in Sorghum bicolor under phytohormone and abiotic stress.
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Wang JR,Hu H,Wang GH,Li J,Chen JY,Wu P
Mol Plant 2009 2(4) 823-31
Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and regulation by hormones.
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Xu M, Zhu L, Shou H, Wu P.
Plant Cell Physiol. 2005 46(10) 1674-81
A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice.
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MORITA Y., KYOZUKA J.
RGN 2004 21 87-88
Identification of rice PIN homologs
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to cold( GO:0009409 )
response to cadmium ion( GO:0046686 )
root development( GO:0048364 )
integral to membrane( GO:0016021 )
transmembrane transport( GO:0055085 )
auxin polar transport( GO:0009926 )
response to auxin stimulus( GO:0009733 )
response to cytokinin stimulus( GO:0009735 )
floral organ formation( GO:0048449 )
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Trait Ontology
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auxin sensitivity( TO:0000163 )
cytokinin sensitivity( TO:0000167 )
floral organ development trait( TO:0006022 )
root development trait( TO:0000656 )
callus induction( TO:0000428 )
cold tolerance( TO:0000303 )
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Plant Ontology
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floral organ differentiation stage( PO:0007600 )
lemma( PO:0009037 )
flower bract primordium( PO:0025488 )
anther vascular system( PO:0008013 )
anther( PO:0009066 )
gynoecium primordium( PO:0000019 )
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Related Strains
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Phenotype images
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Last updated
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Nov 20, 2025
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Update info.