Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol PIN1B
Gene Symbol Synonym PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
Gene Name Synonym PIN PROTEIN 1A, the rice homolog of A. thaliana EIR1, PIN-FORMED 1b, PIN-formed 1, rice ethylene insensitive root 1
Protein Name PIN PROTEIN 1B
Chromosome No. 2
Explanation BR000827. D25054. AF056027. Q5SMQ9. a rice EIR1 (Arabidopsis ethylene insensitive root 1)-like gene. OsPIN1a in Zou et al. 2014, Xu et al. 2014, Liu et al. 2018, Guo et al. 2019, Chen et al. 2020. GO:1901698: response to nitrogen compound. GO:0060918: auxin transport. OsPIN1 in Xu et al. 2005, Deshpande et al. 2015, Zhang et al. 2019, Shin et al. 2019. PO:0030123: panicle inflorescence.
Trait Class Vegetative organ - Culm
Biochemical character
Tolerance and resistance - Disease resistance
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
cDNA Accession No. AK099634
MSU ID LOC_Os02g50960.1
RAP ID Os02g0743400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Ouyang Q., Zhang Y., Yang X., Yang C., Hou D., Liu H., Xu H.
Plants (Basel) 2023  12(15) 
Overexpression of <i>OsPIN9</i> Impairs Chilling Tolerance via Disturbing ROS Homeostasis in Rice.
Kawai T., Akahoshi R., Shelley I.J., Kojima T., Sato M., Tsuji H., Inukai Y.
Front Plant Sci 2022  13  834378
Auxin Distribution in Lateral Root Primordium Development Affects the Size and Lateral Root Diameter of Rice.
Wang H.Q., Xuan W., Huang X.Y., Mao C., Zhao F.J.
Plant Cell Physiol. 2021  62(1)  166-177
Cadmium Inhibits lateral root Emergence in Rice by Disrupting OsPIN-mediated Auxin Distribution and the Protective Effect of OsHMA3.
Kannan P., Chongloi G.L., Majhi B.B., Basu D., Veluthambi K., Vijayraghavan U.
Planta 2021  253(2)  39
Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting.
Chen R., Xu N., Yu B., Wu Q., Li X., Wang G., Huang J.
Plant Sci. 2020  298  110575
The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice.
Dong N.Q., Sun Y., Guo T., Shi C.L., Zhang Y.M., Kan Y., Xiang Y.H., Zhang H., Yang Y.B., Li Y.C., Zhao H.Y., Yu H.X., Lu Z.Q., Wang Y., Ye W.W., Shan J.X., Lin H.X.
Nat Commun 2020  11(1)  2629
UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice.
Malik N., Ranjan R., Parida S.K., Agarwal P., Tyagi A.K.
Plant J. 2020  101(6)  1411-1429
Mediator subunit OsMED14_1 plays an important role in rice development.
Pan J., Li Z., Wang Q., Yang L., Yao F., Liu W.
Plant Sci. 2020  290  110318
An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.
Na-Hyun Shin, Do Thi Trang, Woo-Jong Hong, Kang K., Chuluuntsetseg J., Joon-Kwan Moon, Yo-Han Yoo, Ki-Hong Jung, Soo-Cheul Yoo
Int J Mol Sci 2019  21(1) 
Rice Senescence-Induced Receptor-Like Kinase (<i>OsSRLK</i>) Is Involved in Phytohormone-Mediated Chlorophyll Degradation.
Song Y., Li G., Nowak J., Zhang X., Xu D., Yang X., Huang G., Liang W., Yang L., Wang C., Bulone V., Nikoloski Z., Hu J., Persson S., Zhang D.
Plant Physiol. 2019  181(2)  630-644
The Rice actin-binding protein RMD Regulates Light-Dependent Shoot Gravitropism.
Guo T., Chen K., Dong N.Q., Ye W.W., Shan J.X., Lin H.X.
J Integr Plant Biol 2019   
Tillering and small grain 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.
Zhang H., Tan X., Li L., He Y., Hong G., Li J., Lin L., Cheng Y., Yan F., Chen J., Sun Z.
Mol. Plant Pathol. 2019  20(8)  1093-1104
Suppression of auxin signalling promotes rice susceptibility to Rice black streaked dwarf virus infection.
Naz M., Luo B., Guo X., Li B., Chen J., Fan X.
Genes (Basel) 2019  10(4) 
Overexpression of Nitrate Transporter <i>OsNRT2.1</i> Enhances Nitrate-Dependent Root Elongation.
Liu Q., Han R., Wu K., Zhang J., Ye Y., Wang S., Chen J., Pan Y., Li Q., Xu X., Zhou J., Tao D., Wu Y., Fu X.
Nat Commun 2018  9(1)  852
G-protein betagamma subunits determine grain size through interaction with MADS-domain transcription factors in rice.
Xu P., Ali A., Han B., Wu X.
Front Plant Sci 2018  9  1528
Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.
Xu Y.X., Xiao M.Z., Liu Y., Fu J.L., He Y., Jiang D.A.
Plant Mol. Biol. 2017   
The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.
Ma Y., Yang C., He Y., Tian Z., Li J.
J. Exp. Bot. 2017  68(17)  4885-4898
Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.
Yang J., Yuan Z., Meng Q., Huang G., Périn C., Bureau C., Meunier A.C., Ingouff M., Bennett M.J., Liang W., Zhang D.
Front Plant Sci 2017  8  256
Dynamic Regulation of Auxin Response during Rice Development Revealed by Newly Established Hormone Biosensor Markers.
Cho S.H., Paek N.C.
Plant Signal Behav 2016  11(6)  e1184807
Regulatory role of the OsWOX3A transcription factor in rice root development.
Deshpande G.M., Ramakrishna K., Chongloi G.L., Vijayraghavan U.
J. Exp. Bot. 2015  66(9)  2773-84
Functions for rice RFL in vegetative axillary meristem specification and outgrowth.
Singh P., Mohanta T.K., Sinha A.K.
PLoS ONE 2015  10(4)  e0123620
Unraveling the Intricate Nexus of Molecular Mechanisms Governing Rice Root Development: OsMPK3/6 and Auxin-Cytokinin Interplay.
Xu J., Zha M., Li Y., Ding Y., Chen L., Ding C., Wang S.
Plant Cell Rep. 2015  34(9)  1647-62
The interaction between nitrogen availability and auxin, cytokinin, and strigolactone in the control of shoot branching in rice (Oryza sativa L.).
Xu H.W.a, Mo Y.W.b, Wang W.c, Wang H.b, Wang Z.d
Rice Science 2014  21  83-89
OsPIN1a gene participates in Regulating negative phototropism of rice riceoots
Zhou Y., Liu L., Huang W., Yuan M., Zhou F., Li X., Lin Y.
PLoS ONE 2014  9(4)  e94210
Overexpression of OsSWEET5 in Rice Causes Growth Retardation and Precocious Senescence.
Zou Y., Liu X., Wang Q., Chen Y., Liu C., Qiu Y., Zhang W.
Biochim. Biophys. Acta 2014  1840(6)  1676-1685
OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.
Li G., Liang W., Zhang X., Ren H., Hu J., Bennett M.J., Zhang D.
Proc. Natl. Acad. Sci. U.S.A. 2014  111(28)  10377-82
Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
Lu Z., Yu H., Xiong G., Wang J., Jiao Y., Liu G., Jing Y., Meng X., Hu X., Qian Q., Fu X., Wang Y., Li J.
Plant Cell 2013  25(10)  3743-59
Genome-Wide Binding Analysis of the Transcription Activator IDEAL PLANT ARCHITECTURE1 Reveals a Complex Network Regulating Rice Plant Architecture.
Lee S.T., Huang W.L.
Botanical Studies 2013  54 
Cytokinin, auxin, and abscisic acid affects sucrose metabolism conduce to de novo shoot organogenesis in rice (Oryza sativa L.) callus
Zhang Q., Li J., Zhang W., Yan S., Wang R., Zhao J., Li Y., Qi Z., Sun Z., Zhu Z.
Plant J. 2012  72(5)  805-16
The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance.
Zhu Z.X., Liu Y., Liu S.J., Mao C.Z., Wu Y.R., Wu P.
Mol Plant 2011  5(1)  154-61
A Gain-of-Function Mutation in OsIAA11 Affects lateral root Development in Rice.
ChenJia Shen, YouHuang Bai, SuiKang Wang, SaiNa Zhang, YunRong Wu, Chen M., DeAn Jiang, YanHua Qi
FEBS J. 2010  277(14)  2954-69
Expression profile of PIN, AUX/LAX and PGP auxin transporter gene families in Sorghum bicolor under phytohormone and abiotic stress.
Miyashita Y., Takasugi T., Ito Y.
Plant Science 2010  178  424-428
Identification and expression analysis of PIN genes in rice
Wang JR,Hu H,Wang GH,Li J,Chen JY,Wu P
Mol Plant 2009  2(4)  823-31
Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and regulation by hormones.
Carraro N., Forestan C., Canova S., Traas J., Varotto S.
Plant Physiol. 2006  142(1)  254-64
ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize.
Ivan A Paponov, William D Teale, Trebar M., Blilou I., Palme K.
Trends Plant Sci. 2005  10(4)  170-7
The PIN auxin efflux facilitators: evolutionary and functional perspectives.
Xu M, Zhu L, Shou H, Wu P.
Plant Cell Physiol. 2005  46(10)  1674-81
A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice.
RGN 2004  21  87-88
Identification of rice PIN homologs
Luschnig,C., Gaxiola,R.A., Grisafi,P. and Fink,G.R.
Genes Dev. 1998  12(14)  2175-2187
EIR1, a root-specific protein involved in auxin transport, is required for gravitropism in Arabidopsis thaliana.
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DB Reference
Gramene ID -
Gene Ontology transmembrane transport( GO:0055085 )
integral to membrane( GO:0016021 )
adventitious root development( GO:0048830 )
auxin polar transport( GO:0009926 )
auxin mediated signaling pathway( GO:0009734 )
leaf shaping( GO:0010358 )
flower development( GO:0009908 )
transporter activity( GO:0005215 )
apical part of cell( GO:0045177 )
auxin efflux carrier complex( GO:0009921 )
basal plasma membrane( GO:0009925 )
cytoplasm( GO:0005737 )
response to hormone stimulus( GO:0009725 )
gravitropism( GO:0009630 )
inflorescence development( GO:0010229 )
leaf formation( GO:0010338 )
response to auxin stimulus( GO:0009733 )
response to cytokinin stimulus( GO:0009735 )
root development( GO:0048364 )
floral organ formation( GO:0048449 )
defense response to virus( GO:0051607 )
plasmodesma( GO:0009506 )
plant-type cell wall( GO:0009505 )
cotyledon morphogenesis( GO:0048826 )
transport( GO:0006810 )
xylem and phloem pattern formation( GO:0010051 )
membrane( GO:0016020 )
phototropism( GO:0009638 )
plasma membrane( GO:0005886 )
endocytosis( GO:0006897 )
response to cadmium ion( GO:0046686 )
response to cold( GO:0009409 )
Trait Ontology anatomy and morphology related trait( TO:0000017 )
auxin content( TO:0002672 )
auxin sensitivity( TO:0000163 )
shoot branching( TO:0002639 )
root branching( TO:0000257 )
root development trait( TO:0000656 )
cytokinin sensitivity( TO:0000167 )
root phototropism( TO:0002652 )
tillering ability( TO:0000329 )
plant growth hormone sensitivity( TO:0000401 )
nitrogen sensitivity( TO:0000011 )
floral organ development trait( TO:0006022 )
black streak dwarf virus resistance( TO:0000020 )
cold tolerance( TO:0000303 )
Plant Ontology root development stage( PO:0007520 )
floral organ differentiation stage( PO:0007600 )
gynoecium primordium( PO:0000019 )
anther( PO:0009066 )
flower bract primordium( PO:0025488 )
lemma( PO:0009037 )
anther vascular system( PO:0008013 )
inflorescence( PO:0009049 )
lateral root primordium( PO:0000016 )
Related Strains
Phenotype images
Last updated
Nov 23, 2023