Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol FLO4
Gene Symbol Synonym FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK
CGSNL Gene Name FLOURY ENDOSPERM 4
Gene Name Synonym floury endosperm4, floury endosperm 4, pyruvate orthophospate dikinase, "Pyruvate, phosphate dikinase 1, chloroplastic", "Pyruvate, orthophosphate dikinase 1", pyruvate orthophosphate dikinase, pyruvate orthophosphate dikinase B, cytosolic pyruvate orthophosphate dikinase, orthophosphate dikinase, Pyruvate phosphate dikinase
Protein Name PYRUVATE, ORTHOPHOSPHATE DIKINASE 1
Allele flo4
Chromosome No. 5
Explanation EC=2.7.9.1 Q6AVA8. AY427567 (promoter). AJ004966. GRO:0007172; embryo stage EM6 ; GRO:0007175; embryo stage EM8 ; GRO:0007042; 08-dough stage ; GRO:0007174; embryo stage EM7 ; GRO:0007045; 09-mature grain stage.
Trait Class Tolerance and resistance - Stress tolerance
Biochemical character
Vegetative organ - Leaf
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
Expression
Sequence/Locus
cDNA Accession No. AK068025
MSU ID LOC_Os05g33570.1
LOC_Os05g33570.2
RAP ID Os05g0405000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Paul P., Dhatt B.K., Miller M., Folsom J.J., Wang Z., Krassovskaya I., Liu K., Sandhu J., Yu H., Zhang C., Obata T., Staswick P., Walia H.
Plant Physiol. 2020  182(2)  933-948
<i>MADS78</i> and <i>MADS79</i> Are Essential Regulators of Early Seed Development in Rice.
Wang H., Zhang Y., Sun L., Xu P., Tu R., Meng S., Wu W., Anis G.B., Hussain K., Riaz A., Chen D., Cao L., Cheng S., Shen X.
Int J Mol Sci 2018  19(8) 
<i>WB1</i>, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.
Wang H., Mo Y.J., Im D.E., Jang S.G., Ham T.H., Lee J., Jeung J.U., Kwon S.W.
Mol. Genet. Genomics 2018   
A new SNP in cyOsPPDK gene is associated with floury endosperm in Suweon 542.
Liu J., Shen J., Xu Y., Li X., Xiao J., Xiong L.
J. Exp. Bot. 2016  67(19)  5785-5798
Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.
Xu E., Chen M., He H., Zhan C., Cheng Y., Zhang H., Wang Z.
Front Plant Sci 2016  7  2006
Proteomic Analysis Reveals Proteins Involved in Seed Imbibition under Salt Stress in Rice.
Yang J., Kim S.R., Lee S.K., Choi H., Jeon J.S., An G.
Plant Sci. 2015  240  79-89
Alanine aminotransferase 1 (OsAlaAT1) plays an essential role in the regulation of starch storage in rice endosperm.
Mo Y.J., Jeung J.U., Shin Y.S., Park C.S., Kang K.H., Kim B.K.
Rice (N Y) 2013  6  37
Agronomic and genetic analysis of Suweon 542, a rice floury mutant line suitable for dry milling.
Kang HG, Park S, Matsuoka M, An G.
Plant J. 2005  42(6)  901-911
White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C-type pyruvate orthophosphate dikinase gene (OsPPDKB).
Qu,L.Q. and Takaiwa,F.
Plant Biotechnol J. 2004  2(2)  113-125
Evaluation of tissue specificity and expression strength of rice seed component gene promoters in transgenic rice
A Moons, R Valcke, M Van Montagu
Plant J. 1998  15(1)  89-98
Low-oxygen stress and water deficit induce cytosolic pyruvate orthophosphate dikinase (PPDK) expression in roots of rice, a C3 plant.
Imaizumi,N., Ku,M.S., Ishihara,K., Samejima,M., Kaneko,S. and Matsuoka,M.
Plant Mol. Biol. 1997  34(5)  701-716
Characterization of the gene for pyruvate,orthophosphate dikinase from rice, a C3 plant, and a comparison of structure and expression between C3 and C4 genes for this protein.
TextPresso Search Search textpresso for FLO4 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0101188
Ontologies
Gene Ontology ATP binding( GO:0005524 )
cytosol( GO:0005829 )
photosynthesis( GO:0015979 )
magnesium ion binding( GO:0000287 )
asparagine biosynthetic process( GO:0006529 )
leaf senescence( GO:0010150 )
phosphorylation( GO:0016310 )
transferase activity, transferring phosphorus-containing groups( GO:0016772 )
starch biosynthetic process( GO:0019252 )
pyruvate, phosphate dikinase activity( GO:0050242 )
transferase activity( GO:0016740 )
lipid biosynthetic process( GO:0008610 )
response to light stimulus( GO:0009416 )
chloroplast( GO:0009507 )
plastid( GO:0009536 )
kinase activity( GO:0016301 )
response to salt stress( GO:0009651 )
Trait Ontology floury endosperm( TO:0000104 )
light sensitivity( TO:0000075 )
leaf senescence( TO:0000249 )
salt tolerance( TO:0006001 )
Plant Ontology aleurone layer( PO:0005360 )
root( PO:0009005 )
endosperm( PO:0009089 )
leaf lamina( PO:0020039 )
4 leaf senescence stage( PO:0001054 )
leaf sheath( PO:0020104 )
scutellum( PO:0020110 )
seed imbibition stage( PO:0007022 )
Related Strains
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Phenotype images
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Last updated
Oct 22, 2021


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