|
Basic Information
|
|
CGSNL Gene Symbol
|
OSH1
|
|
Gene Symbol Synonym
|
OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
|
|
CGSNL Gene Name
|
HOMEOBOX 1
|
|
Gene Name Synonym
|
Oryza sativa homeobox1, Homeobox protein OSH1, Homeobox protein knotted-1-like 6, Homeobox protein knotted-1-like 1, Rice KNOX gene-1, KNOX PROTEIN 1, KNOX protein 1, KNOX protein 1, HOMEOBOX 1, HOMEOBOX PROTEIN OSH1
|
|
Protein Name
|
HOMEOBOX PROTEIN OSH1
|
|
Allele
|
osh1, osh1-1, osh1-2
|
|
Chromosome No.
|
3
|
|
Explanation
|
Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. OSH1 is responsible to maintain cells in an indeterminate state in all meristematic tissues. D16507. P46609. C19151, AU091905. AF003599. an ortholog of KNOTTED1 (KN1). GO:0090511: periclinal cell division. GO:1901348: positive regulation of secondary cell wall biogenesis. TO:0000993: cellulose content. GO:2001008: positive regulation of cellulose biosynthetic process. TO:0000835: leaf sheath morphology trait.
|
|
Trait Class
|
Character as QTL - Germination
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
Other
Vegetative organ - Shoot apical meristem(SAM)
Character as QTL - Yield and productivity
|
|
Expression
|
embryo - Em4 - Globular stage III
leaf - P0 - Formation of leaf founder cells
|
|
Sequence/Locus
|
|
cDNA Accession No.
|
AK107637
|
|
MSU ID
|
LOC_Os03g51690.1
LOC_Os03g51690.2
LOC_Os03g51690.3
|
|
RAP ID
|
Os03g0727000
|
|
Links
|
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
|
INSD Accession List
(Test version)
|
Link to INSD Accession List
|
|
Map
|
|
Locate(cM)
|
|
|
Link map
|
Classical linkage map
|
|
References
|
|
Xu T., Fu D., Xiong X., Zhu J., Feng Z., Liu X., Wu C.
PLoS Genet. 2023 19(4) e1010698
OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.
|
|
Luo X., Wei Y., Zheng Y., Wei L., Wu F., Cai Q., Xie H., Zhang J.
BMC Plant Biol. 2023 23(1) 11
Analysis of co-expression and gene regulatory networks associated with sterile lemma development in rice.
|
|
Liu X., Deng X., Kong W., Sun T., Li Y.
Int J Mol Sci 2023 24(2)
The Pyramiding of Elite Allelic Genes Related to grain number Increases grain number per Panicle Using the Recombinant Lines Derived from <i>Indica-japonica</i> Cross in Rice.
|
|
Chen Y., Qi H., Yang L., Xu L., Wang J., Guo J., Zhang L., Tan Y., Pan R., Shu Q., Qian Q., Song S.
Cell Rep 2023 42(7) 112702
The OsbHLH002/OsICE1-OSH1 module orchestrates secondary cell wall formation in rice.
|
|
Naithani S., Mohanty B., Elser J., D'Eustachio P., Jaiswal P.
Plants (Basel) 2023 12(11)
Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (<i>Oryza sativa</i>).
|
|
Dai D., Zhang H., He L., Chen J., Du C., Liang M., Zhang M., Wang H., Ma L.
Int J Mol Sci 2022 23(16)
<i>Panicle Apical Abortion 7</i> Regulates Panicle Development in Rice (<i>Oryza sativa</i> L.).
|
|
Prakash S., Rai R., Zamzam M., Ahmad O., Peesapati R., Vijayraghavan U.
Front Plant Sci 2022 13 865928
OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.
|
|
Huang L., Hua K., Xu R., Zeng D., Wang R., Dong G., Zhang G., Lu X., Fang N., Wang D., Duan P., Zhang B., Liu Z., Li N., Luo Y., Qian Q., Yao S., Li Y.
Plant Cell 2021
The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice.
|
|
Xiao Y., Zhang G., Liu D., Niu M., Tong H., Chu C.
Plant J. 2020
GSK2 stabilizes OFP3 to suppress brassinosteroid responses in rice.
|
|
Xia T., Chen H., Dong S., Ma Z., Ren H., Zhu X., Fang X., Chen F.
Plant J. 2020 104(6) 1635-1647
OsWUS promotes tiller bud growth by establishing weak apical dominance in rice.
|
|
Liu S., Fu H., Jiang J., Chen Z., Gao J., Shu H., Zhang S., Yang C., Liu J.
Front Plant Sci 2019 10 848
Overexpression of a CPYC-Type Glutaredoxin, <i>OsGrxC2.2</i>, Causes Abnormal Embryos and an Increased grain weight in Rice.
|
|
Liu X., Wen-Jing Cai, Yin X., Yang D., Dong T., Yu-Qi Feng, Wu Y.
J. Exp. Bot. 2019
Two dioxygenases, slc1 and SLC2, play essential roles in shoot development of rice.
|
|
Yin X., Liu X., Xu B., Lu P., Dong T., Yang D., Ye T., Feng Y.Q., Wu Y.
J. Exp. Bot. 2019 70(15) 3895-3909
OsMADS18, a membrane-bound MADS-box transcription factor, modulates plant architecture and the abscisic acid response in rice.
|
|
Xu M., Tang D., Cheng X., Zhang J., Tang Y., Tao Q., Shi W., You A., Gu M., Cheng Z., Yu H.
Plant Physiol. 2019 180(2) 952-965
OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the floral meristem by Auxin Signaling.
|
|
Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
|
|
Song S., Chen Y., Liu L., See Y.H.B., Mao C., Gan Y., Yu H.
Nat Plants 2018 4(7) 495-504
OsFTIP7 determines auxin-mediated anther dehiscence in rice.
|
|
Yang C., Ma Y., He Y., Tian Z., Li J.
Plant J. 2018 93(3) 489-501
OsOFP19 modulates plant architecture by integrating the cell division pattern and brassinosteroid signaling.
|
|
Huang X., Peng X., Sun M.X.
New Phytol. 2017 215(3) 1039-1058
OsGCD1 is essential for rice fertility and required for embryo dorsal-ventral pattern formation and endosperm development.
|
|
Zhang T., Li Y., Ma L., Sang X., Ling Y., Wang Y., Yu P., Zhuang H., Huang J., Wang N., Zhao F., Zhang C., Yang Z., Fang L., He G.
Proc. Natl. Acad. Sci. U.S.A. 2017
LATERAL FLORET 1 induced the three-florets spikelet in rice.
|
|
Yi J., Lee Y.S., Lee D.Y., Cho M.H., Jeon J.S., An G.
J. Exp. Bot. 2016 67(8) 2425-37
OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
|
|
Tanaka W., Ohmori Y., Ushijima T., Matsusaka H., Matsushita T., Kumamaru T., Kawano S., Hirano H.Y.
Plant Cell 2015 27(4) 1173-84
Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1.
|
|
Xu Y., Zong W., Hou X., Yao J., Liu H., Li X., Zhao Y., Xiong L.
Plant J. 2015 83(5) 806-17
OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
|
|
Tsuda K., Kurata N., Ohyanagi H., Hake S.
Plant Cell 2014 26(9) 3488-500
Genome-Wide Study of KNOX Regulatory Network Reveals Brassinosteroid Catabolic Genes Important for Shoot Meristem Function in Rice.
|
|
Kuijt S.J., Greco R., Agalou A., Shao J., 't Hoen CC., Overnäs E., Osnato M., Curiale S., Meynard D., van Gulik R., Maraschin Sde F., Atallah M., de Kam RJ., Lamers G.E., Guiderdoni E., Rossini L., Meijer A.H., Ouwerkerk P.B.
Plant Physiol. 2014 164(4) 1952-66
Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX Families of Transcription Factors[W].
|
|
Farquharson K.L.
Plant Cell 2014 26(9) 3469
A Rice KNOX Transcription Factor Represses Brassinosteroid Production in the Shoot Apical Meristem.
|
|
Zhang J.J., Xue H.W.
J Integr Plant Biol 2013 55(3) 232-49
OsLEC1/OsHAP3E participates in the determination of meristem identity in both vegetative and reproductive developments of rice.
|
|
Luo J., Liu H., Zhou T., Gu B., Huang X., Shangguan Y., Zhu J., Li Y., Zhao Y., Wang Y., Zhao Q., Wang A., Wang Z., Sang T., Wang Z., Han B.
Plant Cell 2013 25(9) 3360-76
An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice.
|
|
Ohmori Y., Tanaka W., Kojima M., Sakakibara H., Hirano H.Y.
Plant Cell 2013 25(1) 229-41
WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice.
|
|
Luo L., Li W., Miura K., Ashikari M., Kyozuka J.
Plant Cell Physiol. 2012 53(10) 1793-801
Control of tiller growth of rice by OsSPL14 and Strigolactones, which work in two independent pathways.
|
|
Itoh J.I., Hibara K.I., Kojima M., Sakakibara H., Nagato Y.
Plant J. 2012 72 869-881
Rice DECUSSATE controls phyllotaxy by affecting the cytokinin signaling pathway.
|
|
Tsuda K., Ito Y., Sato Y., Kurata N.
Plant Cell 2011 23(12) 4368-81
Positive autoregulation of a KNOX gene is essential for shoot apical meristem maintenance in rice.
|
|
Ito Y,Kimura F,Hirakata K,Tsuda K,Takasugi T,Eiguchi M,Nakagawa K,Kurata N
Plant J. 2011 66(4) 680-8
Fatty acid elongase is required for shoot development in rice.
|
|
Gao Z,Qian Q,Liu X,Yan M,Feng Q,Dong G,Liu J,Han B
Plant Mol. Biol. 2009 71(3) 265-76
Dwarf 88, a novel putative esterase gene affecting architecture of rice plant.
|
|
Tsuda K., Ito Y., Yamaki S., Miyao A., Hirochika H., Kurata N.
Plant Science 2009 177 131-135
Isolation and mapping of three rice mutants that showed ectopic expression of KNOX genes in leaves
|
|
Abe M., Kuroshita H., Umeda M., Jun-Ichi Itoh, Nagato Y.
Dev. Biol. 2008 319(2) 384-93
The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period.
|
|
Jain M,Tyagi AK,Khurana JP
FEBS J. 2008 275 2845-61
Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice.
|
|
Kuijt SJ, Lamers GE, Rueb S, Scarpella E, Ouwerkerk PB, Spaink HP, Meijer AH.
Plant Mol. Biol. 2004 55(6) 781-796
Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
|
|
Yamaguchi,T., Nakayama,K., Hayashi,T., Yazaki,J., Kishimoto,N., Kikuchi,S. and Koike,S.
Biosci. Biotechnol. Biochem. 2004 68(6) 1315-1323
cDNA Microarray Analysis of Rice Anther Genes under Chilling Stress at the Microsporogenesis Stage Revealed Two Genes with DNA Transposon Castaway in the 5'-Flanking Region.
|
|
Ito, Y., Eiguchi, M. and Kurata, N.
Genesis 2001 30 231-238
|
|
Sentoku, N., Sato, Y. and Matsuoka, M.
Dev. Biol. 2000 220 358-364
|
|
Liu,G., Yan,C., Zhai,W., He,P., Yang,J., Li,X. and Zhu,L.
Sci. China, C, Life Sciences 1999 42(2) 162-170
Amplification, analysis and chromosome mapping of novel homeobox-containing and homeobox-flanking sequences in rice
|
|
Satoh, N., S-K. Hong, A. Nishimura, M. Matsuoka, H. Kitano, Y. Nagato.
Development 1999 126 3629-3636.
Initiation of shoot apical meristem in rice: characterization of four SHOOTLESS genes.
|
|
Sentoku,N., Sato,Y., Kurata,N., Ito,Y., Kitano,H. and Matsuoka,M.
Plant Cell 1999 11(9) 1651-1663
Regional expression of the rice KN1-type homeobox gene family during embryo, shoot, and flower development.
|
|
Sato Y., S.-K. Hong, A. Tagiri, H. Kitano, N. Yamamoto, Y. Nagato and M. Matsuoka
Proc. Natl. Acad. Sci. U.S.A. 1996 93 8117-8122.
A rice homeobox gene, OSH1, is expressd before organ differentiation in a specific region during early embryogenesis.
|
|
Sato Y, Tamaoki M, Murakami T, Yamamoto N, Kano-Murakami Y, Matsuoka M.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 1996 251(1) 13-22
Abnormal cell divisions in leaf primordia caused by the expression of the rice homeobox gene OSH1 lead to altered morphology of leaves in transgenic tobacco.
|
|
Matsuoka M, Ichikawa H, Saito A, Tada Y, Fujimura T, Kano-Murakami Y.
Plant Cell 1993 5(9) 1039-1048
Expression of a rice homeobox gene causes altered morphology of transgenic plants.
|
|
DB Reference
|
|
Gramene ID
|
GR:0061179
|
|
Ontologies
|
|
Gene Ontology
|
DNA binding( GO:0003677 )
transcription factor activity( GO:0003700 )
transcription( GO:0006350 )
brassinosteroid mediated signaling( GO:0009742 )
brassinosteroid biosynthetic process( GO:0016132 )
nucleus( GO:0005634 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
anther dehiscence( GO:0009901 )
anther development( GO:0048653 )
floral organ development( GO:0048437 )
response to gravity( GO:0009629 )
seed germination( GO:0009845 )
response to flooding( GO:0009413 )
response to mechanical stimulus( GO:0009612 )
cellulose biosynthetic process( GO:0030244 )
cell wall thickening( GO:0052386 )
plant-type cell wall organization( GO:0009664 )
secondary cell wall biogenesis( GO:0009834 )
|
|
Trait Ontology
|
leaf shape( TO:0000492 )
temperature response trait( TO:0000432 )
leaf sheath length( TO:0002689 )
leaf lamina joint bending( TO:0002688 )
leaf angle( TO:0000206 )
auxin content( TO:0002672 )
filled grain number( TO:0000447 )
submergence tolerance( TO:0000524 )
gravity response trait( TO:0002693 )
lodging incidence( TO:0000068 )
|
|
Plant Ontology
|
anther development stage( PO:0001004 )
vascular leaf( PO:0009025 )
0 seed germination stage( PO:0007057 )
coleoptile emergence stage( PO:0007045 )
shoot apical meristem( PO:0020148 )
leaf sheath( PO:0020104 )
|
|
Related Strains
|
|
-
|
|
Phenotype images
|
|
-
|
|
Last updated
|
|
Feb 23, 2025
|
Update info.
Click here for feedback