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Basic Information
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CGSNL Gene Symbol
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D1
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Gene Symbol Synonym
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d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
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CGSNL Gene Name
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DAIKOKU DWARF
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Gene Name Synonym
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daikoku dwarf, XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 7, dwarf-1, Guanine nucleotide-binding protein alpha-1 subunit, GP-alpha-1, Protein Dwarf1, G-protein alpha subunit, GP-alpha-1, G-protein alpha subunit 1, dwarf69, dwarf 69, GTP binding protein alpha-subunit, dwarf 89, rice G protein a subunit 1, G protein a subunit 1
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Protein Name
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GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT
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Allele
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d1, d89, d1-5, rga1, d1-c
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Chromosome No.
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5
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Explanation
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One third of normal height, having short thick leaves of dark green color. Internodes are thick and sometimes the second internode does not elongate. Grain is small and round. D38232. L35844. A2Y3B5(indica). Q0DJ33(japonica). PO:0009047; stem ; PO:0000003; whole plant ; PO:0009049; inflorescence ; PO:0009010; seed ; PO:0020039; leaf lamina ; PO:0020142; stem internode ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. L35844, AY792541-AY792546 (O. sativa and other wild rice species). AY299684, AY188586, AY188587, AY188596, AY188597 (wild rice species). L28001. DQ223335-DQ223343, DQ223368-DQ223382, DQ223400, DQ223401, DQ223409-DQ223413, DQ911247 (wild rice species). LOC_Os05g26890. HQ634688.
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Trait Class
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Vegetative organ - Leaf
Vegetative organ - Culm
Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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L28001
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MSU ID
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LOC_Os05g26890.1
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RAP ID
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Os05g0333200
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
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RAP-DB
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IRGSP 1.0
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Build5
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Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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30.0
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Link map
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Classical linkage map
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References
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Xu P., Ali A., Han B., Wu X.
Front Plant Sci 2018 9 1528
Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.
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Sun S., Wang L., Mao H., Shao L., Li X., Xiao J., Ouyang Y., Zhang Q.
Nat Commun 2018 9(1) 851
A G-protein pathway determines grain size.in rice.
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Qiu J., Hou Y., Wang Y., Li Z., Zhao J., Tong X., Lin H., Wei X., Ao H., Zhang J.
Int J Mol Sci 2017 18(1)
A Comprehensive Proteomic Survey of ABA-Induced Protein Phosphorylation in Rice (Oryza sativa L.).
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Ma Y., Dai X., Xu Y., Luo W., Zheng X., Zeng D., Pan Y., Lin X., Liu H., Zhang D., Xiao J., Guo X., Xu S., Niu Y., Jin J., Zhang H., Xu X., Li L., Wang W., Qian Q., Ge S., Chong K.
Cell 2015 160(6) 1209-21
COLD1 confers chilling tolerance in rice.
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Zhang C., Bai M.Y., Chong K.
Plant Cell Rep. 2014 33(5) 683-96
Brassinosteroid-mediated regulation of agronomic traits in rice.
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Jung K.H., Kim S.R., Giong H.K., Nguyen M.X., Go H.J., An G.
Mol Plant 2014
Genome-wide Identification and Functional Analysis of Genes Expressed Ubiquitously in Rice.
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Yang D.W.a, Zheng X.H.a, Cheng C.P.a, Wang W.D.b, Xing D.H.c, Lu L.B.a, Liu C.D.a, Ye N.a, Zeng M.J.a, Ye X.F.a
Euphytica 2014 197 145-159
A dwarfing mutant caused by deactivation function of alpha subunit of the heterotrimeric G-protein in rice
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Sun H., Qian Q., Wu K., Luo J., Wang S., Zhang C., Ma Y., Liu Q., Huang X., Yuan Q., Han R., Zhao M., Dong G., Guo L., Zhu X., Gou Z., Wang W., Wu Y., Lin H., Fu X.
Nat. Genet. 2014 46(6) 652-6
Heterotrimeric G proteins regulate nitrogen-use efficiency in rice.
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Yadav D.K., Shukla D., Tuteja N.
Plant Physiol. Biochem. 2013 63 262-71
Rice heterotrimeric G-protein alpha subunit (RGA1): in silico analysis of the gene and promoter and its upregulation under abiotic stress.
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Hu X., Qian Q., Xu T., Zhang Y., Dong G., Gao T., Xie Q., Xue Y.
PLoS Genet. 2013 9(3) e1003391
The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice.
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Utsunomiya Y. , Samejima C. , Takayanagi Y. , Izawa Y. , Yoshida T. , Sawada Y. , Fujisawa Y. , Kato H. , Iwasaki Y.
Plant J. 2011 67(5)) 907-16
Suppression of the rice heterotrimeric G?protein beta-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions.
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Li,Z.M., Zheng,X.M. and Ge,S.
Theor. Appl. Genet. 2011 123(1) 21-31
Genetic diversity and domestication history of African rice (Oryza glaberrima) as inferred from multiple gene sequences
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Tanaka A,Nakagawa H,Tomita C,Shimatani Z,Ohtake M,Nomura T,Jiang CJ,Dubouzet JG,Kikuchi S,Sekimoto H,Yokota T,Asami T,Kamakura T,Mori M
Plant Physiol. 2009 151(2) 669-80
BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice.
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Zhang,L.B. and Ge,S.
Mol. Biol. Evol. 2007 24(3) 769-783
Multilocus analysis of nucleotide variation and speciation in Oryza officinalis and its close relatives
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Bethke PC, Hwang YS, Zhu T, Jones RL.
Plant Physiol. 2006 140(2) 484-98
Global patterns of gene expression in the aleurone of wild-type and dwarf1 mutant rice.
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Guo,Y.L. and Ge,S.
Am. J. Bot. 2005 92(9) 1548-1558
Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochondrial, and nuclear genomes
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Bao,Y. and Ge,S.
Plant Syst. Evol. 2004 249(1-2) 55-66
Origin and phylogeny of Oryza species with the CD genome based on multiple-gene sequence data
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Laetitia Perfus-Barbeoch, Alan M Jones, Sarah M Assmann
Curr. Opin. Plant Biol. 2004 7(6) 719-31
Plant heterotrimeric G protein function: insights from Arabidopsis and rice mutants.
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Kato,C., Mizutani,T., Tamaki,H., Kumagai,H., Kamiya,T., Hirobe,A., Fujisawa,Y., Kato,H. and Iwasaki,Y.
Plant J. 2004 38(2) 320-331
Characterization of heterotrimeric G protein complexes in rice plasma membrane
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Fei,X.W., Deng,X.D., Wang,Y.S., Liu,L.S. and Xu,Z.F.
Acta scientiarum naturalium, Universitatis Sunyatseni (Zhongshan Da Xue Xue Bao Zi Ran Ke Xue Ban) 2004 43 (1) 70-74
Genetic Analysis and molecular characterization of the GTP binding protein alpha-subunit gene from rice dwarf mutatant dwarf 69
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Suharsono, U., Y. Fujisawa, T. Kawasaki, Y. Iwasaki, H. Satoh and K. Shimamoto
Proc. Natl. Acad. Sci. U.S.A. 2002 99 13307-13312
The heterotrimeric G protein α subunit acts upstream of the small GTPase Rac in disease resistance of rice.
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Ueguchi-Tanaka, M., Y. Fujisawa, M. Kobayashi, M. Ashikari, Y. Iwasaki, H. Kitano and M. Matsuoka
Proc. Natl. Acad. Sci. U.S.A. 2000 97 11638-11343
Rice dwarf mutant d1, which is defective in the α subunit of the heterotrimeric G protein, affects gibberellin signal transduction.
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Fujisawa,Y., Kato,T., Ohki,S., Ishikawa,A., Kitano,H., Sasaki,T., Asahi,T. and Iwasaki,Y.
Proc. Natl. Acad. Sci. U.S.A. 1999 96(13) 7575-7580
Suppression of the heterotrimeric G protein causes abnormal morphology, including dwarfism, in rice.
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Ashikari,M., Wu,J., Yano,M., Sasaki,T. and Yoshimura,A.
Proc. Natl. Acad. Sci. U.S.A. 1999 96(18) 10284-10289
Rice gibberellin-insensitive dwarf mutant gene Dwarf 1 encodes the alpha-subunit of GTP-binding protein.
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Ashikari, M., J. Wu, M. Yano, T. Sasaki and A. Yoshimura
Breeding Science 1998 48(Suppl. 2) 70
Map-based cloning of rice Dwarf1 gene.
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Ashikari, M., S. Saji, Y. Umehara, T. Matsumoto, M. Yano, T. Sasaki, A. Yoshimura and N. Iwata
Breeding Science 1997 47(Suppl. 2) 192
Physical mapping around d-1 gene in rice.
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Ashikari, M., O. Ideta, A. Yoshimura and N. Iwata
RGN 1996 13 76-78.
Fine map of d-1 gene in rice.
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Takamure, I., M.C. Hong and T. Kinoshita
Breeding Science 1996 46(Suppl. 1) 78
Genetic interactions between major genes concerned with grain size in rice.
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Ashikari, M., A. Yoshimura and N. Iwata
Breeding Science 1996 46(Suppl. 2) 79
Fine mapping of d-1 dwarf gene in rice.
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Seo,H.S., Kim,H.Y., Jeong,J.Y., Lee,S.Y., Cho,M.J. and Bahk,J.D.
Plant Mol. Biol. 1995 27(6) 1119-1131
Molecular cloning and characterization of RGA1 encoding a G protein alpha subunit from rice (Oryza sativa L. IR-36).
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Ishikawa,A., Tsubouchi,H., Iwasaki,Y. and Asahi,T.
Plant Cell Physiol. 1995 36(2) 353-359
Molecular cloning and characterization of a cDNA for the alpha subunit of a G protein from rice.
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Ideta, O., A. Yoshimura, M. Ashikari and N. Iwata
RGN 1994 11 116-117.
Integration of conventional and RFLP linkage maps in rice.III. Choromosomes 5, 7, 8 and 12.
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Mitsunaga, S., T. Tashiro and J. Yamaguchi
Theor. Appl. Genet. 1994 87 705-712.
Identification and characterization of gibberellin-insensitive mutants from among dwarf mutants of rice.
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Satoh, H. and N. Iwata
Japan. J. Breed. 1990 40(Suppl. 2) 268-269.
Linkage analysis in rice. On three mutant loci for endosperm properties, ge(giant embryo), du-4(dull endosperm-4) and flo-1(floury endosperm-1).
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Kinoshita, T.
In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo. 1984 187-274.
Gene analysis and linkage map.
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Iwata, N., H. Satoh and T. Omura
J. Fac. Agr. Kyushu Univ. 1984 29(2.3) 139-144.
Studies on the trisomics in rice plants (Oryza sativa L.). VII. On some marker genes located on chromosome 2 and their sequence on the linkage map.
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Yoshimura, A., N. Iwata and T. Omura
Japan. J. Breed. 1982 32(4) 323-332.
Linkage analysis by reciprocal translocation method in rice plants (Oryza sativa L.). III. Marker genes located on chromosomes 2, 3, 4 and 7.
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Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1981 31(Suppl. 1) 66-67.
Linkage analysis by use of trisomics in rice (Oryza sativa L. ). IV. Linkage groups locating on chromosomes 2 and 10.
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Nagao, S. and M. Takahashi
J. Fac. Agr. Hokkaido Univ. 1963 53(1) 72-130.
Trial construction of twelve linkage groups in Japanese rice. (Genetical studies on rice plant, XXVII).
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Nagao, S.
Adv. Genet. 1951 4 181-212.
Genic analysis and linkage relationship of characters in rice.
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TextPresso Search
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Search textpresso for D1
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0060184
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Ontologies
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Gene Ontology
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GTPase activity( GO:0003924 )
signal transducer activity( GO:0004871 )
GTP binding( GO:0005525 )
gibberellic acid mediated signaling( GO:0009740 )
hormone-mediated signaling( GO:0009755 )
heterotrimeric G-protein complex( GO:0005834 )
protein amino acid ADP-ribosylation( GO:0006471 )
defense response( GO:0006952 )
G-protein coupled receptor protein signaling pathway( GO:0007186 )
multicellular organismal development( GO:0007275 )
response to heat( GO:0009408 )
response to cold( GO:0009409 )
response to water deprivation( GO:0009414 )
response to salt stress( GO:0009651 )
response to abscisic acid stimulus( GO:0009737 )
response to metal ion( GO:0010038 )
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Trait Ontology
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stem length( TO:0000576 )
red light sensitivity( TO:0000158 )
leaf width( TO:0000370 )
leaf color( TO:0000326 )
seed shape( TO:0000484 )
leaf length( TO:0000135 )
leaf shape( TO:0000492 )
micronutrient sensitivity( TO:0000080 )
abscisic acid sensitivity( TO:0000615 )
heat tolerance( TO:0000259 )
drought tolerance( TO:0000276 )
salt tolerance( TO:0006001 )
gibberellic acid sensitivity( TO:0000166 )
internode length( TO:0000145 )
leaf lamina color( TO:0000299 )
panicle type( TO:0000089 )
grain shape( TO:0002730 )
plant growth hormone sensitivity( TO:0000401 )
cold tolerance( TO:0000303 )
basal internode diameter( TO:0000132 )
grain size( TO:0000397 )
plant height( TO:0000207 )
panicle length( TO:0000040 )
seed size( TO:0000391 )
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Plant Ontology
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inflorescence( PO:0009049 )
leaf lamina( PO:0020039 )
stem internode( PO:0020142 )
whole plant( PO:0000003 )
seed( PO:0009010 )
vascular leaf( PO:0009025 )
stem( PO:0009047 )
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Related Strains
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Stocks for Genes
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1
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F Lines
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24
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Backcross Fn Generation (T65)
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2
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Phenotype images
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Last updated
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May 1, 2019
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