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Basic Information
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CGSNL Gene Symbol
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XA5
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Gene Symbol Synonym
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xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
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CGSNL Gene Name
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XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 5
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Gene Name Synonym
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Xanthomonas oryzae pv. oryzae resistance 5, Xanthomonas campestris pv. oryzae resistance-5, Xanthomonas oryzae pv. oryzae resistance-5, Transcription initiation factor IIA subunit 2, General transcription factor IIA subunit 2, Transcription initiation factor IIA gamma chain, TFIIA-gamma, gamma subunit of transcription factor IIA, basal transcription factor IIA gamma subunit 5
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Protein Name
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TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2
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Allele
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OsTFIIAgamma5V39E, OsTFIIAgamma5V39D, OsTFIIAgamma5V39A, OsTFIIAgamma5V39L, OsTFIIAgamma5V39Q, xa5, mXa5
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Chromosome No.
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5
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Explanation
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Resistant to the all six Philippine isolates.This gene is located on chromosome 5 flanked by markers RS7 and RM611. A2XZI2(indica). Q0DLD3(japonica). PO:0009025; leaf. GRO:0007146; vegetative lag phase. AY643717, AF532975, AY643716.
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Trait Class
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Tolerance and resistance - Disease resistance
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK065182
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MSU ID
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LOC_Os05g01710.1
LOC_Os05g01710.2
LOC_Os05g01710.3
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RAP ID
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Os05g0107700
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
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Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Gupta A., Liu B., Chen Q.J., Yang B.
Plant Biotechnol. J. 2023 21(7) 1454-1464
High-efficiency prime editing enables new strategies for broad-spectrum resistance to bacterial blight of rice.
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Xu X., Xu Z., Ma W., Haq F., Li Y., Shah S.M.A., Zhu B., Zhu C., Zou L., Chen G.
J. Exp. Bot. 2021 72(8) 3249-3262
TALE-triggered and iTALE-suppressed Xa1-mediated resistance to bacterial blight is independent of rice transcription factor subunits OsTFIIAgamma1 or OsTFIIAgamma5.
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Jiang G., Yin D., Shi Y., Zhou Z., Li C., Liu P., Jia Y., Wang Y., Liu Z., Yu M., Wu X., Zhai W., Zhu L.
Sci Rep 2020 10(1) 6313
OsNPR3.3-dependent salicylic acid signaling is involved in recessive gene xa5-mediated immunity to rice bacterial blight.
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Ma W., Zou L., Zhiyuan J.I., Xiameng X.U., Zhengyin X.U., Yang Y., Alfano J.R., Chen G.
Mol. Plant Pathol. 2018 19(10) 2248-2262
Xanthomonas oryzae pv. oryzae TALE proteins recruit OsTFIIAgamma1 to compensate for the absence of OsTFIIAgamma5 in bacterial blight in rice.
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Huang R., Hui S., Zhang M., Li P., Xiao J., Li X., Yuan M., Wang S.
Front Plant Sci 2017 8 1919
A Conserved Basal Transcription Factor Is Required for the Function of Diverse TAL Effectors in Multiple Plant Hosts.
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Salgotra R.K., Gupta B.B., Millwood R.J., Balasubramaniam M., Stewart Jr.
Euphytica 2012 187(3) 313-323
Introgression of bacterial leaf blight resistance and aroma genes using functional marker-assisted selection in rice (Oryza sativa L.)
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Sugio A,Yang B,Zhu T,White FF
Proc. Natl. Acad. Sci. U.S.A. 2007 104 10720-5
Two type III effector genes of Xanthomonas oryzae pv. oryzae control the induction of the host genes OsTFIIAgamma1 and OsTFX1 during bacterial blight of rice.
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Nino-Liu, D.O., P.C. Ronald and A.J. Bogdanove
Mol. Plant Pathol. 2006 7(5) 303-324
Pathogen profile Xanthomonas oryzae pathovars: model pathogens of a model crop.
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Jiang GH, Xia ZH, Zhou YL, Wan J, Li DY, Chen RS, Zhai WX, Zhu LH.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 2006 275(4) 354-366
Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFIIAgamma1.
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Iyer,A.S. and McCouch,S.R.
Mol. Plant Microbe Interact. 2004 17(12) 1348-1354
The rice bacterial blight resistance gene xa5 encodes a novel form of disease resistance.
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Muralidharan, K., D. Krishnaveni, G.S. Laha, C.S. Reddy, M. Srinivasprasad and R. Sridhar
RGN 2003 20 96-98
Appraisal of bacterial leaf blight resistance genes in India.
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Blair,M.W., Garris,A.J., Iyer,A.S., Chapman,B., Kresovich,S. and McCouch,S.R.
Theor. Appl. Genet. 2003 107(1) 62-73
High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice ( Oryza sativa L.).
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Huang, N., E.R. Angeles, J. Domingo, G. Magpantay, S. Singh, G. Zhang, N. Kumaravadivel, J. Bennett and G.S. Khush
Theor. Appl. Genet. 1997 95 313-320.
Pyramiding of bacterial blight resistance genes in rice marker-assisted selection using RFLP and PCR.
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Endo, N., T. Ogawa and G.S. Khush
Breeding Science 1997 47 27-32.
Isozyme classification of Myanmar rice cultivars resistant to bacterial blight.
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Taura, S., M. Asahiro and F. Shimotu
Breeding Science 1997 47(Suppl. 1) 269
Reaction of F2 population from the cross of BJ1/IR24 to the Japanese bacterial blight pathogens.
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Blair, M.W. and S.R. McCouch
Theor. Appl. Genet. 1997 95 174-184.
Microsatellite and sequence-tagged site markers diagnostic for the rice bacterial leaf blight resistance gene xa-5.
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Sanchez, A.C., D. Yang, G.S. Khush, Y. Zhu and N. Huang
RGN 1997 14 118-119.
Construction of overlapping BAC clones for xa5 region of chromosome 5.
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Blair, M.W. and S.R. McCouch
Rice Genetics III. IRRI, Manila, Philippines. 1996 582-589.
Development of diagnostic markers for the bacterial blight resistance gene, xa5.
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Yoshimura, A., J.X. Lei, T. Matsumoto, H. Tsunematsu, S. Yoshimura, N. Iwata, M.R. Baraoidan, T.W. Mew and R.J. Nelson
Rice Genetics III. IRRI, Manila, Philippines. 1996 577-581.
Analysis and pyramiding of bacterial blight resistance genes in rice by using DNA markers.
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Ogawa, T.
Rice Genetics III. IRRI, Manila, Philippines. 1996 456-459.
Monitoring race distribution and identification of genes for resistance to bacterial leaf blight.
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Nelson, R.J., E. Ardales, M. Baraoidan, I. Yap, M.L.C. George, D.H. Chen, M. Finckh, A. Bordeos, C.M. Vera Cruz, T. Adhikari, C.C. Mundt, M. Bustamam, W. Cruz, H. Leung, N. Huang, A. Yoshimura, S. McCouch, T.W. Mew and J.E. Leach
Rice Genetics III. IRRI, Manila, Philippines. 1996 267-277.
Exploring the application of molecular markers for improving resistance to bacterial blight.
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Yoshimura, S., A. Yoshimura, N. Iwata, S.R. McCouch, M.L. Abenes, M.R. Baraoidan, T.W. Mew and R. Nelson
Molecular Breeding 1995 1 375-387.
Tagging and combining bacterial blight resistance genes in rice using RAPD and RFLP markers.
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Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994 138 1251-1274.
Saturated molecular map of the rice genome based on an interspecific backcross population.
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Tanksley, S.D., T.M. Fulton and S.R. McCouch
Genetic Maps, Locus Maps of Complex Genomes, Plants. S.J. O'Brien ed. Cold Spring Harbour Lab. Press. 1993 Book 6 61-79.
Linkage map of rice (Oryza sativa) (2N=24).
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Yoshimura, A., O. Ideta, S. Takebayashi, T. Matsumoto, S. Yoshimura, T. Ogawa and N. Iwata
Japan. J. Breed. 1992 42(Suppl. 2) 124-125.
Integration of RFLP and conventional maps in rice. II. The location of gl-1 and xa-5.
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McCouch, S.R., M.L. Abenes, R. Angeles, G.S. Khush and S.D. Tanksley
RGN 1991 8 143-145.
Molecular tagging of a recessive gene, xa-5, for resistance to bacterical blight of rice.
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Yoshimura, A., T.W. Mew, G.S. Khush and T. Omura
Japan. J. Breed. 1983 33(Suppl. 1) 264-265.
Trisomic analysis of a recessive gene xa-5 for resistance to bacterical blight of rice.
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Singh, R.J., G.S. Khush and T.W. Mew
Crop Sci. 1983 23(3) 558-560.
A new gene for resistance to bacterial blight in rice.
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Sidhu, G.S., G.S. Khush and T.W. Mew
Theor. Appl. Genet. 1978 53 105-111.
Genetic analysis of bacterial blight resistance in seventy-four cultivars of rice, Oryza sativa L.
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Petpisit, V., G.S. Khush and H.E. Kauffman
Crop Sci. 1977 17(4) 551-554.
Inheritance of resistance to bacterial blight in rice.
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TextPresso Search
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Search textpresso for XA5
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0061015
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Ontologies
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Gene Ontology
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nucleus( GO:0005634 )
response to salicylic acid stimulus( GO:0009751 )
defense response( GO:0006952 )
translation( GO:0006412 )
RNA polymerase II transcription factor activity( GO:0003702 )
translation initiation factor activity( GO:0003743 )
transcription factor TFIIA complex( GO:0005672 )
transcription initiation from RNA polymerase II promoter( GO:0006367 )
defense response to bacterium( GO:0042742 )
regulation of transcription( GO:0045449 )
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Trait Ontology
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bacterial blight disease resistance( TO:0000175 )
bacterial leaf streak disease resistance( TO:0000203 )
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Plant Ontology
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vascular leaf( PO:0009025 )
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Related Strains
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Stocks for Genes
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1
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Phenotype images
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Last updated
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Aug 29, 2023
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