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Basic Information
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CGSNL Gene Symbol
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SSI
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Gene Symbol Synonym
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OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI, OsSS1q6, SS1q6
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CGSNL Gene Name
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SOLUBLE STARCH SYNTHASE I
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Gene Name Synonym
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Starch synthase-I, "Soluble starch synthase 1, chloroplastic/amyloplastic", Starch synthase I
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Protein Name
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SOLUBLE STARCH SYNTHASE I
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Allele
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ss1, ss1L
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Chromosome No.
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6
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Explanation
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EC=2.4.1.21 A2Y9M4(indica), Q0DEC8(japonica). AY299404, D38221, AF165890, D16202, E06904. HQ712142, HQ712143, HQ712144, HQ712145, HQ712146, HQ712147, HQ712148, HQ712149. BGIOSGA021860. GO:1901698: response to nitrogen compound. GO:2000896: amylopectin metabolic process.
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Trait Class
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Biochemical character
Seed - Physiological traits - Storage substances
Seed - Physiological traits - Taste
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK109458
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MSU ID
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LOC_Os06g06560.1
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RAP ID
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Os06g0160700
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Chen Z., Zhou W., Guo X., Ling S., Li W., Wang X., Yao J.
Rice (N Y) 2024 17(1) 16
Heat Stress Responsive Aux/IAA Protein, OsIAA29 Regulates Grain Filling Through OsARF17 Mediated Auxin Signaling Pathway.
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Jin S.K., Xu L.N., Leng Y.J., Zhang M.Q., Yang Q.Q., Wang S.L., Jia S.W., Song T., Wang R.A., Tao T., Liu Q.Q., Cai X.L., Gao J.P.
Plant Biotechnol. J. 2023
The OsNAC24-OsNAP protein complex activates OsGBSSI and OsSBEI expression to fine-tune starch biosynthesis in rice endosperm.
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Jang Y.H., Park J.R., Kim E.G., Jan R., Asif S., Farooq M., Zhao D.D., Kim K.M.
Mol. Breed. 2023 43(5) 39
Efficient identification of palatability-related genes using QTL mapping in rice breeding.
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Sun C., Wang Y., Yang X., Tang L., Wan C., Liu J., Chen C., Zhang H., He C., Liu C., Wang Q., Zhang K., Zhang W., Yang B., Li S., Zhu J., Sun Y., Li W., Zhou Y., Wang P., Deng X.
Plant Biotechnol. J. 2023 21(3) 621-634
MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.
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Chen Z., Wang Y., Huang R., Zhang Z., Huang J., Yu F., Lin Y., Guo Y., Liang K., Zhou Y., Chen F.
BMC Plant Biol. 2022 22(1) 137
Integration of transcriptomic and proteomic analyses reveals several levels of metabolic regulation in the excess starch and early senescent leaf mutant LSES1 in rice.
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Liao Y., Ali A., Xue Z., Zhou X., Ye W., Guo D., Liao Y., Jiang P., Wu T., Zhang H., Xu P., Chen X., Zhou H., Liu Y., Wang W., Wu X.
Int J Mol Sci 2022 23(7)
Disruption of <i>LLM9428</i>/<i>OsCATC</i> Represses Starch Metabolism and Confers Enhanced Blast Resistance in Rice.
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Zhang H., Jang S.G., Lar S.M., Lee A.R., Cao F.Y., Seo J., Kwon S.W.
Plants (Basel) 2021 10(6)
Genome-Wide Identification and Genetic Variations of the starch synthase Gene Family in Rice.
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Ali I., Ullah S., Iqbal A., Quan Z., Liang H., Ahmad S., Muhammad I., Amanullah, Imran, Guo Z., Wei S., Jiang L.
BMC Plant Biol. 2021 21(1) 600
Combined application of biochar and nitrogen fertilizer promotes the activity of starch metabolism enzymes and the expression of related genes in rice in a dual cropping system.
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Jiang L., Zhong H., Jiang X., Zhang J., Huang R., Liao F., Deng Y., Liu Q., Huang Y., Wang H., Tao Y., Zheng J.
Front Plant Sci 2021 12 814928
Identification and Pleiotropic Effect Analysis of <i>GSE5</i> on Rice Chalkiness and grain shape.
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Liu X., Luo J., Li T., Yang H., Wang P., Su L., Zheng Y., Bao C., Zhou C.
Rice (N Y) 2021 14(1) 25
SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other Histone Modifications.
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Niu B., Zhang Z., Zhang J., Zhou Y., Chen C.
Plant J. 2021 106(5) 1233-1246
The rice LEC1-like transcription factor OsNF-YB9 interacts with SPK, an endosperm-specific sucrose synthase protein kinase, and functions in seed development.
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Baysal C., He W., Drapal M., Villorbina G., Medina V., Capell T., Khush G.S., Zhu C., Fraser P.D., Christou P.
Proc. Natl. Acad. Sci. U.S.A. 2020 117(42) 26503-26512
Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming.
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Wang J., Chen Z., Zhang Q., Meng S., Wei C.
Plant Physiol. 2020 184(4) 1775-1791
The NAC Transcription Factors OsNAC20 and OsNAC26 Regulate Starch and Storage Protein Synthesis.
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Hu L., Tu B., Yang W., Yuan H., Li J., Guo L., Zheng L., Chen W., Zhu X., Wang Y., Qin P., Ma B., Li S.
Plant Physiol. 2020 183(3) 1073-1087
Mitochondria-Associated pyruvate kinase Complexes Regulate Grain Filling in Rice.
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Chen C., He B., Liu X., Ma X., Liu Y., Yao H.Y., Zhang P., Yin J., Wei X., Koh H.J., Yang C., Xue H.W., Fang Z., Qiao Y.
Plant Biotechnol. J. 2019
Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP1) regulates starch biosynthesis and seed development via heterotetramer formation in rice (Oryza sativa L.).
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Sera Y., Hanamata S., Sakamoto S., Ono S., Kaneko K., Mitsui Y., Koyano T., Fujita N., Sasou A., Masumura T., Saji H., Nonomura K.I., Mitsuda N., Mitsui T., Kurusu T., Kuchitsu K.
Sci Rep 2019 9(1) 18544
Essential roles of autophagy in metabolic regulation in endosperm development during rice seed maturation.
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Fan C., Wang G., Wang Y., Zhang R., Wang Y., Feng S., Luo K., Peng L.
Int J Mol Sci 2019 20(20)
sucrose synthase Enhances Hull Size and grain weight by Regulating Cell Division and Starch Accumulation in Transgenic Rice.
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Liu E., Zeng S., Zhu S., Liu Y., Wu G., Zhao K., Liu X., Liu Q., Dong Z., Dang X., Xie H., Li D., Hu X., Hong D.
Plant Physiol. 2019 181(3) 1207-1222
Favorable Alleles of <i>GRAIN-FILLING RATE1</i> Increase the Grain-Filling Rate and Yield of Rice.
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Lee H.S., Hwang W.H., Jeong J.H., Ahn S.H., Baek J.S., Jeong H.Y., Park H.K., Ku B.I., Yun J.T., Lee G.H., Choi K.J.
BMC Genomics 2019 20(1) 18
Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage.
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Long W., Wang Y., Zhu S., Jing W., Wang Y., Ren Y., Tian Y., Liu S., Liu X., Chen L., Wang D., Zhong M., Zhang Y., Hu T., Zhu J., Hao Y., Zhu X., Zhang W., Wang C., Zhang W., Wan J.
Plant Physiol. 2018 177(2) 698-712
FLOURY shrunken endosperm1 Connects Phospholipid Metabolism and Amyloplast Development in Rice.
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Crofts N., Sugimoto K., Oitome N.F., Nakamura Y., Fujita N.
Plant Mol. Biol. 2017 94(4-5) 399-417
Differences in specificity and compensatory functions among three major starch synthases determine the structure of amylopectin in rice endosperm.
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Qin J., Tang Z., Ma X., Meng Y.
Gene 2017
Investigating the regulatory roles of the microRNAs and the Argonaute 1-enriched small RNAs in plant metabolism.
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Yang J., Kim S.R., Lee S.K., Choi H., Jeon J.S., An G.
Plant Sci. 2015 240 79-89
Alanine aminotransferase 1 (OsAlaAT1) plays an essential role in the regulation of starch storage in rice endosperm.
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Su J., Hu C., Yan X., Jin Y., Chen Z., Guan Q., Wang Y., Zhong D., Jansson C., Wang F., Schnürer A., Sun C.
Nature 2015 523(7562) 602-6
Expression of barley SUSIBA2 transcription factor yields high-starch low-methane rice.
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Morita R., Sugino M., Hatanaka T., Misoo S., Fukayama H.
Plant Physiol. 2015 167(4) 1321-31
CO2-Responsive CONSTANS, CONSTANS-Like, and Time of Chlorophyll a/b Binding Protein Expression1 Protein Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.
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Abe N., Asai H., Yago H., Oitome N.F., Itoh R., Crofts N., Nakamura Y., Fujita N.
BMC Plant Biol. 2014 14(1) 80
Relationships between starch synthase I and branching enzyme isozymes determined using double mutant rice lines.
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Sun,M.M., Abdula,S.E., Lee,H.J., Cho,Y.C., Han,L.Z., Koh,H.J. and Cho,Y.G.
PLoS One 2011 6 (4) e18385
Molecular aspect of good eating quality formation in japonica rice
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Li C., Wang Y., Liu L., Hu Y., Zhang F., Mergen S., Wang G., Schläppi MR., Chu C.
PLoS Genet. 2011 7(7) e1002196
A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency.
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Fujita N., Satoh R., Hayashi A., Kodama M., Itoh R., Aihara S., Nakamura Y.
J. Exp. Bot. 2011 62(14) 4819-31
Starch biosynthesis in rice endosperm requires the presence of either Starch synthase I or IIIa.
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Yan CJ,Tian ZX,Fang YW,Yang YC,Li J,Zeng SY,Gu SL,Xu CW,Tang SZ,Gu MH
Theor. Appl. Genet. 2011 122(1) 63-76
Genetic analysis of starch paste viscosity parameters in glutinous rice (Oryza sativa L.).
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Tian,Z., Qian,Q., Liu,Q., Yan,M., Liu,X., Yan,C., Liu,G., Gao,Z., Tang,S., Zeng,D., Wang,Y., Yu,J., Gu,M. and Li,J.
Proc. Natl. Acad. Sci. U.S.A. 2009 106(51) 21760-5
Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities
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Satoh,H., Shibahara,K., Tokunaga,T., Nishi,A., Tasaki,M., Hwang,S.K., Okita,T.W., Kaneko,N., Fujita,N., Yoshida,M., Hosaka,Y., Sato,A., Utsumi,Y., Ohdan,T. and Nakamura,Y.
Plant Cell 2008 20(7) 1833-1849
Mutation of the Plastidial {alpha}-Glucan Phosphorylase Gene in Rice Affects the Synthesis and Structure of Starch in the Endosperm
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Ryoo N, Yu C, Park CS, Baik MY, Park IM, Cho MH, Bhoo SH, An G, Hahn TR, Jeon JS.
Plant Cell Rep. 2007 26(7) 1083-95
Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.).
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Fujita N,Yoshida M,Kondo T,Saito K,Utsumi Y,Tokunaga T,Nishi A,Satoh H,Park JH,Jane JL,Miyao A,Hirochika H,Nakamura Y
Plant Physiol. 2007 144 2009-23
Characterization of SSIIIa-deficient mutants of rice: the function of SSIIIa and pleiotropic effects by SSIIIa deficiency in the rice endosperm.
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Bao JS, Corke H, Sun M.
Theor. Appl. Genet. 2006 113(7) 1185-96
Microsatellites, single nucleotide polymorphisms and a sequence tagged site in starch-synthesizing genes in relation to starch physicochemical properties in nonwaxy rice (Oryza sativa L.).
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Fujita N, Yoshida M, Asakura N, Ohdan T, Miyao A, Hirochika H, Nakamura Y.
Plant Physiol. 2006 140(3) 1070-84
Function and characterization of starch synthase I using mutants in rice.
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Hirose T, Terao T.
Planta. 2004 220(1) 9-16
A comprehensive expression analysis of the starch synthase gene family in rice (Oryza sativa L.).
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Nishi A, Nakamura Y, Tanaka N, Satoh H
Plant Physiol. 2001 127(2) 459-72
Biochemical and genetic analysis of the effects of amylose-extender mutation in rice endosperm
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Tanaka,K., Ohnishi,S., Kishimoto,N., Kawasaki,T. and Baba,T.
Plant Physiol. 1995 108(2) 677-683
Structure, organization, and chromosomal location of the gene encoding a form of rice soluble starch synthase.
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Baba,T., Nishihara,M., Mizuno,K., Kawasaki,T., Shimada,H., Kobayashi,E., Ohnishi,S., Tanaka,K. and Arai,Y.
Plant Physiol. 1993 103(2) 565-573
Identification, cDNA cloning, and gene expression of soluble starch synthase in rice (Oryza sativa L.) immature seeds.
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DB Reference
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Gramene ID
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GR:0061111
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Ontologies
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Gene Ontology
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starch synthase activity( GO:0009011 )
amyloplast( GO:0009501 )
chloroplast( GO:0009507 )
starch biosynthetic process( GO:0019252 )
response to flooding( GO:0009413 )
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Trait Ontology
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seed composition based quality trait( TO:0000488 )
submergence sensitivity( TO:0000286 )
nitrogen sensitivity( TO:0000011 )
alkali digestion( TO:0000134 )
gelatinization temperature( TO:0000462 )
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Plant Ontology
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seed( PO:0009010 )
endosperm( PO:0009089 )
leaf( PO:0025034 )
seed maturation stage( PO:0007632 )
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Related Strains
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Phenotype images
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Last updated
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Feb 21, 2025
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