Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SGSD3
Gene Symbol Synonym OsWRKY36, WRKY36, OsSGSD3
CGSNL Gene Name SMALL GRAIN AND SEMI-DWARF 3
Gene Name Synonym Rice WRKY gene36, small grain and semi-dwarf 3
Protein Name TRANSCRIPTION FACTOR WRKY36
Allele sgsd3
Chromosome No. 4
Explanation BK005039. HQ858855. WRKY42 in Wu et al. (2005) and Sun et al. 2014. WRKY111 in Berri et al. (2009). OsWRKY34 in Kim et al. 2021.
Trait Class Vegetative organ - Culm
Seed - Morphological traits - Grain shape
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK073695
MSU ID LOC_Os04g46060.1
RAP ID Os04g0545000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Li P., Jiang J., Zhang G., Miao S., Lu J., Qian Y., Zhao X., Wang W., Qiu X., Zhang F., Xu J.
Front Plant Sci 2022  13  1102938
Integrating GWAS and transcriptomics to identify candidate genes conferring heat tolerance in rice.
Kim J.S., Chae S., Jun K.M., Lee G.S., Jeon J.S., Kim K.D., Kim Y.K.
Planta 2021  253(2)  40
Rice protein-binding microarrays: a tool to detect cis-acting elements near promoter regions in rice.
Lan J., Lin Q., Zhou C., Ren Y., Liu X., Miao R., Jing R., Mou C., Nguyen T., Zhu X., Wang Q., Zhang X., Guo X., Liu S., Jiang L., Wan J.
Plant Mol. Biol. 2020  104(4-5)  429-450
Small grain and semi-dwarf 3, a WRKY transcription factor, negatively regulates plant height and grain size.by stabilizing SLR1 expression in rice.
Choi N.Y., Lee E., Lee S.G., Choi C.H., Park S.R., Ahn I., Bae S.C., Hwang C.H., Hwang D.J.
Front Plant Sci 2017  8  1628
Genome-Wide Expression Profiling of OsWRKY Superfamily Genes during Infection with Xanthomonas oryzae pv. oryzae Using Real-Time PCR.
Sun L.J.a, Huang L.b, Li D.Y.b, Zhang H.J.b, Song F.M.b
Zhiwu Shengli Xuebao/Plant Physiology Journal 2014  50  1651-1658
Comprehensive expression analysis suggests overlapping of rice OsWRKY transcription factor genes during abiotic stress responses
Rice WRKY Working Group
Rice (N Y) 2012  5  3
Nomenclature report on rice WRKYs. -Conflict regarding gene names and its solution
Yilmaz,A., Nishiyama,M.Y. Jr., Fuentes,B.G., Souza,G.M., Janies,D., Gray,J. and Grotewold,E.
Plant Physiol. 2009  149(1)  171-180
GRASSIUS: a platform for comparative regulatory genomics across the grasses
Berri S,Abbruscato P,Faivre-Rampant O,Brasileiro AC,Fumasoni I,Satoh K,Kikuchi S,Mizzi L,Morandini P,Pe ME,Piffanelli P
BMC Plant Biol 2009  9  120
Characterization of WRKY co-regulatory networks in rice and Arabidopsis.
Christian A. Ross Yue Liu Qingxi J. Shen
Journal of integrative plant biology 2007  49(6)  827-842
The WRKY Gene Family in Rice (Oryza sativa)
Ryu,H.S., Han,M., Lee,S.K., Cho,J.I., Ryoo,N., Heu,S., Lee,Y.H., Bhoo,S.H., Wang,G.L., Hahn,T.R. and Jeon,J.S.
Plant Cell Rep. 2006  25(8)  836-847
A comprehensive expression analysis of the WRKY gene superfamily in rice plants during defense response.
Kun-Lu Wu, Ze-Jian Guo, Hai-Hua Wang, Li J.
DNA research : an international journal for rapid publication of reports on genes and genomes 2005  12(1)  9-26
The WRKY family of transcription factors in rice and Arabidopsis and their origins.
Xie Z, Zhang ZL, Zou X, Huang J, Ruas P, Thompson D, Shen QJ.
Plant Physiol. 2005  137 (1)  176-189
Annotations and Functional Analyses of the Rice WRKY Gene Superfamily Reveal Positive and Negative Regulators of Abscisic Acid Signaling in Aleurone Cells
Qiu,Y., Jing,S., Fu,J., Li,L. and Yu,D.
Chin. Sci. Bull. 2004  49  2159-2168
Cloning and analysis of expression profile of 13 WRKY genes in rice
Zhang,Z.L., Xie,Z., Zou,X., Casaretto,J., Ho,T.H. and Shen,Q.J.
Plant Physiol. 2004  134 (4)  1500-1513
A Rice WRKY Gene Encodes a Transcriptional Repressor of the Gibberellin Signaling Pathway in Aleurone Cells
TextPresso Search Search textpresso for SGSD3 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to gibberellin stimulus( GO:0009739 )
sequence-specific DNA binding( GO:0043565 )
defense response( GO:0006952 )
transcription factor activity( GO:0003700 )
response to heat( GO:0009408 )
defense response to bacterium( GO:0042742 )
Trait Ontology heat tolerance( TO:0000259 )
bacterial blight disease resistance( TO:0000175 )
plant height( TO:0000207 )
grain size( TO:0000397 )
gibberellic acid sensitivity( TO:0000166 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Aug 31, 2023


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