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Basic Information
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CGSNL Gene Symbol
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SGSD3
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Gene Symbol Synonym
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OsWRKY36, WRKY36, OsSGSD3
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CGSNL Gene Name
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SMALL GRAIN AND SEMI-DWARF 3
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Gene Name Synonym
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Rice WRKY gene36, small grain and semi-dwarf 3
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Protein Name
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TRANSCRIPTION FACTOR WRKY36
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Allele
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sgsd3
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Chromosome No.
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4
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Explanation
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BK005039. HQ858855. WRKY42 in Wu et al. (2005) and Sun et al. 2014. WRKY111 in Berri et al. (2009). OsWRKY34 in Kim et al. 2021. GO:1901347: negative regulation of secondary cell wall biogenesis.
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Trait Class
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Vegetative organ - Culm
Seed - Morphological traits - Grain shape
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK073695
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MSU ID
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LOC_Os04g46060.1
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RAP ID
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Os04g0545000
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Li P., Jiang J., Zhang G., Miao S., Lu J., Qian Y., Zhao X., Wang W., Qiu X., Zhang F., Xu J.
Front Plant Sci 2022 13 1102938
Integrating GWAS and transcriptomics to identify candidate genes conferring heat tolerance in rice.
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Kim J.S., Chae S., Jun K.M., Lee G.S., Jeon J.S., Kim K.D., Kim Y.K.
Planta 2021 253(2) 40
Rice protein-binding microarrays: a tool to detect cis-acting elements near promoter regions in rice.
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Miyamoto T., Takada R., Tobimatsu Y., Suzuki S., Yamamura M., Osakabe K., Osakabe Y., Sakamoto M., Umezawa T.
Plant Sci. 2020 296 110466
Double knockout of OsWRKY36 and OsWRKY102 boosts lignification with altering culm morphology of rice.
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Lan J., Lin Q., Zhou C., Ren Y., Liu X., Miao R., Jing R., Mou C., Nguyen T., Zhu X., Wang Q., Zhang X., Guo X., Liu S., Jiang L., Wan J.
Plant Mol. Biol. 2020 104(4-5) 429-450
Small grain and semi-dwarf 3, a WRKY transcription factor, negatively regulates plant height and grain size.by stabilizing SLR1 expression in rice.
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Choi N.Y., Lee E., Lee S.G., Choi C.H., Park S.R., Ahn I., Bae S.C., Hwang C.H., Hwang D.J.
Front Plant Sci 2017 8 1628
Genome-Wide Expression Profiling of OsWRKY Superfamily Genes during Infection with Xanthomonas oryzae pv. oryzae Using Real-Time PCR.
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Sun L.J.a, Huang L.b, Li D.Y.b, Zhang H.J.b, Song F.M.b
Zhiwu Shengli Xuebao/Plant Physiology Journal 2014 50 1651-1658
Comprehensive expression analysis suggests overlapping of rice OsWRKY transcription factor genes during abiotic stress responses
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Rice WRKY Working Group
Rice (N Y) 2012 5 3
Nomenclature report on rice WRKYs. -Conflict regarding gene names and its solution
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Yilmaz,A., Nishiyama,M.Y. Jr., Fuentes,B.G., Souza,G.M., Janies,D., Gray,J. and Grotewold,E.
Plant Physiol. 2009 149(1) 171-180
GRASSIUS: a platform for comparative regulatory genomics across the grasses
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Berri S,Abbruscato P,Faivre-Rampant O,Brasileiro AC,Fumasoni I,Satoh K,Kikuchi S,Mizzi L,Morandini P,Pe ME,Piffanelli P
BMC Plant Biol 2009 9 120
Characterization of WRKY co-regulatory networks in rice and Arabidopsis.
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Christian A. Ross Yue Liu Qingxi J. Shen
Journal of integrative plant biology 2007 49(6) 827-842
The WRKY Gene Family in Rice (Oryza sativa)
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Ryu,H.S., Han,M., Lee,S.K., Cho,J.I., Ryoo,N., Heu,S., Lee,Y.H., Bhoo,S.H., Wang,G.L., Hahn,T.R. and Jeon,J.S.
Plant Cell Rep. 2006 25(8) 836-847
A comprehensive expression analysis of the WRKY gene superfamily in rice plants during defense response.
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Kun-Lu Wu, Ze-Jian Guo, Hai-Hua Wang, Li J.
DNA research : an international journal for rapid publication of reports on genes and genomes 2005 12(1) 9-26
The WRKY family of transcription factors in rice and Arabidopsis and their origins.
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Xie Z, Zhang ZL, Zou X, Huang J, Ruas P, Thompson D, Shen QJ.
Plant Physiol. 2005 137 (1) 176-189
Annotations and Functional Analyses of the Rice WRKY Gene Superfamily Reveal Positive and Negative Regulators of Abscisic Acid Signaling in Aleurone Cells
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Qiu,Y., Jing,S., Fu,J., Li,L. and Yu,D.
Chin. Sci. Bull. 2004 49 2159-2168
Cloning and analysis of expression profile of 13 WRKY genes in rice
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Zhang,Z.L., Xie,Z., Zou,X., Casaretto,J., Ho,T.H. and Shen,Q.J.
Plant Physiol. 2004 134 (4) 1500-1513
A Rice WRKY Gene Encodes a Transcriptional Repressor of the Gibberellin Signaling Pathway in Aleurone Cells
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TextPresso Search
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Search textpresso for SGSD3
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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plant-type cell wall modification( GO:0009827 )
secondary cell wall biogenesis( GO:0009834 )
response to gibberellin stimulus( GO:0009739 )
sequence-specific DNA binding( GO:0043565 )
defense response( GO:0006952 )
transcription factor activity( GO:0003700 )
response to heat( GO:0009408 )
defense response to bacterium( GO:0042742 )
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Trait Ontology
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heat tolerance( TO:0000259 )
bacterial blight disease resistance( TO:0000175 )
plant height( TO:0000207 )
grain size( TO:0000397 )
gibberellic acid sensitivity( TO:0000166 )
stem anatomy and morphology trait( TO:0000361 )
lignin content( TO:0000731 )
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Plant Ontology
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-
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Related Strains
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Phenotype images
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Last updated
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Oct 2, 2024
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