Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SODCC1
Gene Symbol Synonym sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1
CGSNL Gene Name CYTOSOLIC SUPEROXIDASE DISMUTASE
Gene Name Synonym cytosolic superoxidase dismutase, Superoxide dismutase [Cu-Zn] 1, Cytosolic Cu/Zn-siperoxide dismutase, rice Cu/Zn-SOD, Cu/Zn-SOD, Cytosolic Copper/Zinc-Superoxide Dismutase 1, "Superoxide dismutase (Cu-Zn) 4, cytosolic", Cu-dependent SOD 1.2
Protein Name CYTOSOLIC SUPEROXIDASE DISMUTASE
Allele
Chromosome No. 3
Explanation EC=1.15.1.1 L36320. L19435. D00999. D15875. A2XGP6(indica). Q0DRV6(japonica). PO:0009005; root ; PO:0005052; callus ; PO:0009025; leaf ; PO:0009010; seed. Superoxide dismutase (Cu-Zn) 4, cytosolic in Sasaki et al. 1994. SodCc2 in Zhang et al. 2014, Huang et al. 2018. OsSODA1 in Wang et al. 2014. LOC_Os03g22810. ROS-scavenging enzyme. GO:0072593: reactive oxygen species metabolic process. OsCu/Zn-SOD2 in Lou et al. 2017. Cu/ZnSOD1 in Huang et al. 2018.
Trait Class Biochemical character
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK120692
AK061662
MSU ID LOC_Os03g22810.1
RAP ID Os03g0351500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Huang L., Zhang M., Jia J., Zhao X., Huang X., Ji E., Ni L., Jiang M.
Plant Cell Physiol. 2018  59(5)  916-929
An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays a Positive Role in ABA-Induced Antioxidant Defense in Oryza sativa L.
Xiong H., Yu J., Miao J., Li J., Zhang H., Wang X., Liu P., Zhao Y., Jiang C., Yin Z., Li Y., Guo Y., Fu B., Wang W., Li Z., Ali J., Li Z.
Plant Physiol. 2018  178(1)  451-467
Natural Variation in <i>OsLG3</i> Increases drought tolerance in Rice by Inducing ROS Scavenging.
Huang B., Zhang J.M., Chen X.L., Xin X., Yin G.K., He J.J., Lu X.X., Zhou Y.C.
Plant Cell Rep. 2018   
Oxidative damage and antioxidative indicators in 48 h germinated rice embryos during the vitrification-cryopreservation procedure.
Ghneim-Herrera T., Selvaraj M.G., Meynard D., Fabre D., Peña A., Ben Romdhane W., Ben Saad R., Ogawa S., Rebolledo M.C., Ishitani M., Tohme J., Al-Doss A., Guiderdoni E., Hassairi A.
Front Plant Sci 2017  8  994
Expression of the Aeluropus littoralis AlSAP Gene Enhances Rice Yield under Field Drought at the Reproductive Stage.
Rossatto T., do Amaral MN., Benitez L.C., Vighi I.L., Braga E.J.B., de Magalhães Júnior AM., Maia M.A.C., da Silva Pinto L.
Physiol Mol Biol Plants 2017  23(4)  865-875
Gene expression and activity of antioxidant enzymes in rice plants, cv. BRS AG, under saline stress.
Andrés-Bordería A., Andrés F., Garcia-Molina A., Perea-García A., Domingo C., Puig S., Peñarrubia L.
Plant Mol. Biol. 2017   
Copper and ectopic expression of the Arabidopsis transport protein COPT1 alter iron homeostasis in rice (Oryza sativa L.).
Lou D., Wang H., Liang G., Yu D.
Front Plant Sci 2017  8  993
OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.
Auler P.A., Benitez L.C., do Amaral MN., Vighi I.L., Rodrigues G.S., da Maia LC., Braga E.J.B.
Genet. Mol. Res. 2017  16(2) 
Selection of candidate reference genes and validation for real-time PCR studies in rice plants exposed to low temperatures.
Srivastava A.K., Zhang C., Yates G., Bailey M., Brown A., Sadanandom A.
Plant Physiol. 2016  170(4)  2378-91
SUMO Is a Critical Regulator of Salt Stress Responses in Rice.
Tripathy M.K., Tiwari B.S., Reddy M.K., Deswal R., Sopory S.K.
Protoplasma 2015   
Ectopic expression of PgRab7 in rice plants (Oryza sativa L.) results in differential tolerance at the vegetative and seed setting stage during salinity and drought stress.
Suzuki K., Aoki N., Matsumura H., Okamura M., Ohsugi R., Shimono H.
Plant Cell Environ. 2014   
Cooling water before panicle initiation increases chilling-induced male sterility and disables chilling-induced expression of genes encoding OsFKBP65 and heat shock proteins in rice spikelets.
Zhang H., Liu Y., Wen F., Yao D., Wang L., Guo J., Ni L., Zhang A., Tan M., Jiang M.
J. Exp. Bot. 2014  65(20)  5795-809
A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
Wang L., Yu C., Chen C., He C., Zhu Y., Huang W.
Plant Cell Rep. 2014   
Identification of rice Di19 family reveals OsDi19-4 involved in drought resistance.
Li C.R., Liang D.D., Li J., Duan Y.B., Li H., Yang Y.C., Qin R.Y., Li L., Wei P.C., Yang J.B.
Plant Cell Environ. 2013  36(4)  775-88
Unravelling mitochondrial retrograde regulation in the abiotic stress induction of rice ALTERNATIVE OXIDASE 1 genes.
Ben Saad R., Fabre D., Mieulet D., Meynard D., Dingkuhn M., Al-Doss A., Guiderdoni E., Hassairi A.
Plant Cell Environ. 2012  35(3)  626-43
Expression of the Aeluropus littoralis AlSAP gene in rice confers broad tolerance to abiotic stresses through maintenance of photosynthesis.
Mahanty S., Kaul T., Pandey P., Reddy R.A., Mallikarjuna G., Reddy C.S., Sopory S.K., Reddy M.K.
Gene 2012  505(2)  309-17
Biochemical and molecular analyses of copper-zinc superoxide dismutase from a C(4) plant Pennisetum glaucum reveals an adaptive role in response to oxidative stress.
Xu S., Hu B., He Z., Ma F., Feng J., Shen W., Yang J.
Int J Mol Sci 2011  12(4)  2488-501
Enhancement of Salinity Tolerance during Rice Seed Germination by Presoaking with Hemoglobin.
Seong ES,Guo J,Kim YH,Cho JH,Lim CK,Hyun Hur J,Wang MH
Biochem. Biophys. Res. Commun. 2007  363  126-32
Regulations of marker genes involved in biotic and abiotic stress by overexpression of the AtNDPK2 gene in rice.
Tsukamoto S, Morita S, Hirano E, Yokoi H, Masumura T, Tanaka K.
Plant Physiol. 2005  137(1)  317-327
A novel cis-element that is responsive to oxidative stress regulates three antioxidant defense genes in rice.
Sakamoto,A., Okumura,T., Kaminaka,H. and Tanaka,K.
Plant Physiol. 1995  107(2)  651-652
Molecular cloning of the gene (SodCc1) that encodes a cytosolic copper/zinc-superoxide dismutase from rice (Oryza sativa L.).
Sakamoto,A., Okumura,T., Kaminaka,H., Sumi,K. and Tanaka,K.
FEBS Lett. 1995  358(1)  62-66
Structure and differential response to abscisic acid of two promoters for the cytosolic copper/zinc-superoxide dismutase genes, SodCc1 and SodCc2, in rice protoplasts.
Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Plant J. 1994  6(4)  615-624
Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
Sakamoto,A., Ohsuga,H. and Tanaka,K.
Plant Mol. Biol. 1992  19(2)  323-327
Nucleotide sequences of two cDNA clones encoding different Cu/Zn-superoxide dismutases expressed in developing rice seed (Oryza sativa L.).
TextPresso Search Search textpresso for SODCC1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0080033
Ontologies
Gene Ontology response to oxidative stress( GO:0006979 )
superoxide metabolic process( GO:0006801 )
zinc ion binding( GO:0008270 )
antioxidant activity( GO:0016209 )
oxidation reduction( GO:0055114 )
cytosol( GO:0005829 )
response to ozone( GO:0010193 )
removal of superoxide radicals( GO:0019430 )
response to copper ion( GO:0046688 )
superoxide dismutase activity( GO:0004784 )
copper ion binding( GO:0005507 )
response to superoxide( GO:0000303 )
cytoplasm( GO:0005737 )
response to iron ion( GO:0010039 )
response to salt stress( GO:0009651 )
defense response to bacterium( GO:0042742 )
Trait Ontology oxidative stress( TO:0002657 )
salt tolerance( TO:0006001 )
hydrogen peroxide content( TO:0000605 )
Plant Ontology plant callus( PO:0005052 )
vascular leaf( PO:0009025 )
seed( PO:0009010 )
root( PO:0009005 )
Related Strains
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Phenotype images
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Last updated
Jun 4, 2019


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